Wall clock time and date at job start Sat Apr 11 2020 05:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00123 * 2 1 4 4 C 1.53007 * 109.47118 * 184.39155 * 3 2 1 5 5 N 1.46896 * 109.46847 * 68.81436 * 4 3 2 6 6 C 1.46894 * 111.00400 * 286.44567 * 5 4 3 7 7 C 1.50704 * 109.46879 * 290.31232 * 6 5 4 8 8 H 1.07994 * 120.00168 * 355.33294 * 7 6 5 9 9 C 1.37885 * 119.99877 * 175.33321 * 7 6 5 10 10 N 1.31512 * 119.99783 * 2.51296 * 9 7 6 11 11 Si 1.86792 * 119.99873 * 182.50856 * 9 7 6 12 12 H 1.48506 * 109.46843 * 65.00217 * 11 9 7 13 13 H 1.48506 * 109.47313 * 184.99653 * 11 9 7 14 14 H 1.48500 * 109.47458 * 304.99961 * 11 9 7 15 15 C 1.38586 * 110.99808 * 162.48664 * 5 4 3 16 16 N 1.31217 * 126.47166 * 17.87994 * 15 5 4 17 17 N 1.28521 * 109.86191 * 179.97438 * 16 15 5 18 18 C 1.30294 * 110.05527 * 0.02562 * 17 16 15 19 19 C 1.50699 * 126.35060 * 179.97438 * 18 17 16 20 20 C 1.53784 * 113.61517 * 320.88721 * 19 18 17 21 21 C 1.54046 * 86.98255 * 140.01999 * 20 19 18 22 22 C 1.53774 * 87.08234 * 334.56880 * 21 20 19 23 23 N 1.36454 * 126.47435 * 198.15812 * 15 5 4 24 24 C 1.46496 * 127.13591 * 0.02562 * 23 15 5 25 25 C 1.53005 * 109.46638 * 262.72309 * 24 23 15 26 26 O 1.42901 * 109.46748 * 174.88670 * 25 24 23 27 27 C 1.42909 * 113.99907 * 180.02562 * 26 25 24 28 28 H 1.08994 * 109.47010 * 64.82871 * 1 2 3 29 29 H 1.08993 * 109.47212 * 184.82927 * 1 2 3 30 30 H 1.08999 * 109.46923 * 304.83509 * 1 2 3 31 31 H 1.09000 * 109.47102 * 64.39544 * 3 2 1 32 32 H 1.09001 * 109.47331 * 304.39093 * 3 2 1 33 33 H 1.08998 * 109.46841 * 308.81750 * 4 3 2 34 34 H 1.08999 * 109.46861 * 188.81905 * 4 3 2 35 35 H 1.09000 * 109.47477 * 50.31090 * 6 5 4 36 36 H 1.09001 * 109.47257 * 170.31348 * 6 5 4 37 37 H 0.97003 * 120.00042 * 179.97438 * 10 9 7 38 38 H 1.09000 * 112.85184 * 189.69133 * 19 18 17 39 39 H 1.09000 * 113.61296 * 254.61656 * 20 19 18 40 40 H 1.08999 * 113.60765 * 25.51520 * 20 19 18 41 41 H 1.09008 * 113.61576 * 220.02244 * 21 20 19 42 42 H 1.08995 * 113.69507 * 89.13196 * 21 20 19 43 43 H 1.09006 * 113.61685 * 270.88347 * 22 21 20 44 44 H 1.09003 * 113.61777 * 139.98210 * 22 21 20 45 45 H 1.08997 * 109.47262 * 22.72341 * 24 23 15 46 46 H 1.09000 * 109.47177 * 142.73057 * 24 23 15 47 47 H 1.08989 * 109.47552 * 294.88812 * 25 24 23 48 48 H 1.09005 * 109.46755 * 54.89425 * 25 24 23 49 49 H 1.09006 * 109.46596 * 300.00249 * 27 26 25 50 50 H 1.08997 * 109.47224 * 59.99847 * 27 26 25 51 51 H 1.09001 * 109.47141 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5317 1.1864 -0.1105 5 7 3.8882 0.6897 -1.4462 6 6 3.5751 -0.7395 -1.5774 7 6 4.5191 -1.5413 -0.7188 8 1 5.3231 -1.0474 -0.1935 9 6 4.3564 -2.9057 -0.6040 10 7 3.4082 -3.5142 -1.2825 11 14 5.4827 -3.8898 0.5149 12 1 5.2635 -3.4773 1.9246 13 1 5.1829 -5.3370 0.3704 14 1 6.8972 -3.6374 0.1395 15 6 5.2233 0.9335 -1.7266 16 7 6.1642 1.2153 -0.8566 17 7 7.2848 1.3811 -1.4636 18 6 7.1266 1.2169 -2.7465 19 6 8.1985 1.3274 -3.8000 20 6 9.1968 2.4692 -3.5458 21 6 10.2976 1.5043 -4.0255 22 6 9.3721 0.3564 -3.5890 23 7 5.8066 0.9311 -2.9602 24 6 5.1545 0.6730 -4.2464 25 6 5.3702 -0.7889 -4.6431 26 8 4.6358 -1.0719 -5.8359 27 6 4.7691 -2.4188 -6.2946 28 1 -0.3633 0.4371 -0.9300 29 1 -0.3633 -1.0239 0.0865 30 1 -0.3633 0.5870 0.8435 31 1 1.7523 1.8180 0.9267 32 1 1.6278 1.8735 -0.8480 33 1 3.8975 0.4912 0.6452 34 1 3.9850 2.1651 0.0463 35 1 2.5495 -0.9180 -1.2542 36 1 3.6857 -1.0416 -2.6188 37 1 3.2939 -4.4741 -1.2020 38 1 7.7983 1.3149 -4.8139 39 1 9.0524 3.3291 -4.1999 40 1 9.2857 2.7455 -2.4952 41 1 11.2178 1.5682 -3.4446 42 1 10.4726 1.5392 -5.1008 43 1 9.5090 0.0561 -2.5501 44 1 9.3693 -0.4883 -4.2779 45 1 4.0864 0.8719 -4.1586 46 1 5.5838 1.3234 -5.0084 47 1 6.4312 -0.9648 -4.8194 48 1 5.0226 -1.4384 -3.8397 49 1 5.8178 -2.6289 -6.5050 50 1 4.4089 -3.1019 -5.5255 51 1 4.1826 -2.5528 -7.2036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812159801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:37 Heat of formation + Delta-G solvation = 5.518194 kcal Electronic energy + Delta-G solvation = -31963.260135 eV Core-core repulsion = 27900.141393 eV Total energy + Delta-G solvation = -4063.118742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.88805 -39.71591 -39.21483 -39.03644 -37.62289 -36.06415 -34.65952 -31.51416 -30.92442 -30.55329 -28.44668 -27.30477 -26.93948 -26.69177 -26.50047 -24.60711 -24.49854 -23.59706 -21.86620 -21.32490 -19.95490 -18.96003 -18.27897 -17.72401 -17.39094 -17.28426 -17.14978 -16.85829 -16.64630 -16.27122 -16.19314 -15.91149 -15.68323 -15.58738 -15.02537 -14.78274 -14.39344 -13.73130 -13.62517 -13.41416 -13.36582 -13.31271 -13.09468 -13.02202 -12.82831 -12.74011 -12.60412 -12.55059 -12.43467 -12.31654 -12.14502 -11.86599 -11.78353 -11.67673 -11.44543 -11.36780 -11.16302 -11.01535 -10.76762 -10.65854 -10.31699 -10.26242 -9.11048 -8.19999 -6.29307 0.85840 1.26424 1.27989 1.36451 1.37289 1.96300 2.33287 2.66303 3.00587 3.10482 3.17624 3.41282 3.59060 3.72563 3.76973 3.88743 3.97377 4.01618 4.12050 4.14008 4.29543 4.33265 4.35814 4.46334 4.48359 4.50577 4.55310 4.59962 4.63566 4.66197 4.73977 4.79112 4.80518 4.92108 4.92760 4.98829 5.07051 5.10416 5.12388 5.15759 5.28144 5.29402 5.53028 5.63482 5.75657 5.77961 5.90729 6.00590 6.10963 6.43680 6.55822 6.84946 7.36915 7.92080 8.85066 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008813 B = 0.004650 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.365675 B = 6020.581864 C = 6313.017877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.403 6.403 3 C 0.074 3.926 4 C 0.079 3.921 5 N -0.458 5.458 6 C 0.200 3.800 7 C -0.547 4.547 8 H 0.043 0.957 9 C 0.031 3.969 10 N -0.909 5.909 11 Si 0.933 3.067 12 H -0.277 1.277 13 H -0.273 1.273 14 H -0.286 1.286 15 C 0.392 3.608 16 N -0.366 5.366 17 N -0.320 5.320 18 C 0.183 3.817 19 C -0.032 4.032 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.131 4.131 23 N -0.474 5.474 24 C 0.122 3.878 25 C 0.056 3.944 26 O -0.395 6.395 27 C 0.030 3.970 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.011 0.989 37 H 0.263 0.737 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.133 0.867 47 H 0.064 0.936 48 H 0.030 0.970 49 H 0.057 0.943 50 H 0.025 0.975 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 9.672 -11.001 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.323 6.323 3 C -0.003 4.003 4 C -0.049 4.049 5 N -0.182 5.182 6 C 0.075 3.925 7 C -0.586 4.586 8 H 0.061 0.939 9 C -0.169 4.169 10 N -0.548 5.548 11 Si 0.760 3.240 12 H -0.202 1.202 13 H -0.198 1.198 14 H -0.212 1.212 15 C 0.035 3.965 16 N -0.210 5.210 17 N -0.159 5.159 18 C -0.086 4.086 19 C -0.053 4.053 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.170 4.170 23 N -0.169 5.169 24 C -0.001 4.001 25 C -0.022 4.022 26 O -0.313 6.313 27 C -0.066 4.066 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.127 0.873 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.117 0.883 46 H 0.151 0.849 47 H 0.082 0.918 48 H 0.049 0.951 49 H 0.075 0.925 50 H 0.044 0.956 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.637 9.981 -10.140 14.686 hybrid contribution -0.044 -1.900 0.619 1.999 sum 3.594 8.081 -9.521 12.995 Atomic orbital electron populations 1.22804 0.80549 1.02695 1.00698 1.88156 1.20725 1.28229 1.95155 1.22551 0.91434 0.84937 1.01336 1.21945 0.95427 0.99816 0.87703 1.59428 1.08602 1.20738 1.29478 1.20024 0.98743 0.78350 0.95346 1.21836 1.13798 0.93423 1.29532 0.93911 1.25385 0.96425 0.98484 0.96617 1.70002 1.32968 1.09950 1.41913 0.86004 0.79278 0.78390 0.80302 1.20223 1.19767 1.21223 1.22693 0.92188 0.99306 0.82309 1.74533 0.95579 1.25234 1.25631 1.73659 1.17935 1.20602 1.03659 1.25227 0.83842 1.03639 0.95843 1.21392 0.88645 1.00950 0.94277 1.22935 0.94084 0.96345 1.02197 1.22812 0.96737 0.93582 1.02603 1.22953 0.94795 0.97720 1.01518 1.46088 1.09046 1.54258 1.07501 1.21577 1.00201 0.96275 0.82033 1.22673 0.96063 0.95905 0.87585 1.87707 1.71425 1.30680 1.41470 1.22930 1.02189 0.81533 0.99937 0.93410 0.90558 0.92387 0.90339 0.91698 0.94504 0.89237 0.90785 0.97131 0.92761 0.85227 0.88988 0.91008 0.90485 0.87277 0.92171 0.90181 0.88292 0.84934 0.91815 0.95124 0.92464 0.95614 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -15.97 7.75 -148.98 -1.15 -17.13 16 3 C 0.07 2.49 6.21 71.98 0.45 2.93 16 4 C 0.08 3.23 4.91 86.31 0.42 3.65 16 5 N -0.46 -20.38 4.63 -710.36 -3.29 -23.66 16 6 C 0.20 10.32 4.99 85.56 0.43 10.74 16 7 C -0.55 -31.49 7.53 25.60 0.19 -31.30 16 8 H 0.04 2.64 6.42 -2.91 -0.02 2.62 16 9 C 0.03 1.81 5.46 84.66 0.46 2.27 16 10 N -0.91 -53.25 13.29 21.45 0.28 -52.96 16 11 Si 0.93 46.96 29.54 68.60 2.03 48.98 16 12 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 15 C 0.39 17.58 5.57 260.11 1.45 19.03 16 16 N -0.37 -17.61 10.71 -58.00 -0.62 -18.23 16 17 N -0.32 -14.01 11.83 -49.54 -0.59 -14.59 16 18 C 0.18 6.58 7.11 137.64 0.98 7.56 16 19 C -0.03 -0.78 4.08 -11.01 -0.04 -0.83 16 20 C -0.12 -2.41 7.64 31.21 0.24 -2.18 16 21 C -0.12 -2.00 8.09 31.21 0.25 -1.75 16 22 C -0.13 -3.09 7.63 31.12 0.24 -2.85 16 23 N -0.47 -17.90 2.81 -514.85 -1.45 -19.34 16 24 C 0.12 3.77 5.86 86.38 0.51 4.27 16 25 C 0.06 1.85 6.08 71.98 0.44 2.29 16 26 O -0.39 -12.07 10.70 -148.98 -1.59 -13.66 16 27 C 0.03 0.77 11.01 113.37 1.25 2.02 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.78 6.98 -2.39 -0.02 1.76 16 34 H 0.09 3.40 7.75 -2.39 -0.02 3.38 16 35 H 0.07 4.08 5.03 -2.39 -0.01 4.06 16 36 H 0.01 0.59 5.57 -2.39 -0.01 0.57 16 37 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 38 H 0.13 2.42 7.37 -2.39 -0.02 2.40 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.85 7.81 -2.39 -0.02 1.84 16 41 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.81 8.09 -2.38 -0.02 1.79 16 44 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.10 3.26 8.07 -2.39 -0.02 3.24 16 46 H 0.13 2.96 7.57 -2.39 -0.02 2.94 16 47 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.03 1.35 6.23 -2.38 -0.01 1.34 16 49 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 50 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -74.79 406.79 3.04 -71.75 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.91 Total: 20.90 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 8.50 Total: 17.94 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.65 Total: -128.79 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -2.75 Total: -30.79 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -74.79 3.04 -71.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812159801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.266 kcal (2) G-P(sol) polarization free energy of solvation -74.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds