Wall clock time and date at job start Sat Apr 11 2020 05:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99765 * 2 1 4 4 H 1.48503 * 109.47043 * 269.99423 * 3 2 1 5 5 H 1.48505 * 109.46997 * 149.99806 * 3 2 1 6 6 H 1.48495 * 109.47292 * 29.99732 * 3 2 1 7 7 C 1.37874 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99953 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99712 * 180.02562 * 7 2 1 10 10 N 1.46894 * 109.47053 * 174.89086 * 9 7 2 11 11 C 1.46901 * 111.00137 * 67.26294 * 10 9 7 12 12 C 1.52998 * 109.46873 * 76.79691 * 11 10 9 13 13 N 1.46901 * 109.47208 * 184.32262 * 12 11 10 14 14 C 1.47009 * 111.00062 * 293.63353 * 13 12 11 15 15 C 1.53096 * 109.26272 * 177.60983 * 14 13 12 16 16 O 1.43012 * 109.26059 * 56.84317 * 15 14 13 17 17 C 1.43017 * 113.74011 * 301.33527 * 16 15 14 18 18 C 1.47012 * 110.99964 * 169.99662 * 13 12 11 19 19 C 1.46904 * 111.00127 * 303.31217 * 10 9 7 20 20 C 1.52996 * 109.47030 * 282.69550 * 19 10 9 21 21 H 1.09006 * 110.29354 * 302.77590 * 20 19 10 22 22 C 1.54540 * 110.33486 * 180.62724 * 20 19 10 23 23 C 1.54716 * 104.07529 * 217.44445 * 22 20 19 24 24 C 1.53555 * 103.75069 * 0.70099 * 23 22 20 25 25 C 1.52820 * 115.46272 * 253.19781 * 24 23 22 26 26 C 1.53954 * 86.78884 * 217.66122 * 25 24 23 27 27 C 1.52808 * 115.48626 * 152.49183 * 24 23 22 28 28 O 1.43346 * 106.13197 * 22.82292 * 24 23 22 29 29 H 0.96999 * 119.99981 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47426 * 294.89140 * 9 7 2 31 31 H 1.08999 * 109.46950 * 54.89378 * 9 7 2 32 32 H 1.09003 * 109.47521 * 196.79201 * 11 10 9 33 33 H 1.08999 * 109.47475 * 316.79689 * 11 10 9 34 34 H 1.09006 * 109.46994 * 304.31898 * 12 11 10 35 35 H 1.08992 * 109.47674 * 64.32038 * 12 11 10 36 36 H 1.09004 * 109.50388 * 297.54389 * 14 13 12 37 37 H 1.08999 * 109.50804 * 57.66995 * 14 13 12 38 38 H 1.09007 * 109.50097 * 296.91458 * 15 14 13 39 39 H 1.08993 * 109.51317 * 176.78445 * 15 14 13 40 40 H 1.08999 * 109.50805 * 298.73182 * 17 16 15 41 41 H 1.09003 * 109.54068 * 178.61943 * 17 16 15 42 42 H 1.08996 * 109.51031 * 302.32357 * 18 13 12 43 43 H 1.09000 * 109.51028 * 62.46052 * 18 13 12 44 44 H 1.08998 * 109.46970 * 42.69514 * 19 10 9 45 45 H 1.08999 * 109.47230 * 162.69328 * 19 10 9 46 46 H 1.09004 * 110.50933 * 336.09428 * 22 20 19 47 47 H 1.09005 * 110.51417 * 98.66009 * 22 20 19 48 48 H 1.09008 * 110.56980 * 119.26137 * 23 22 20 49 49 H 1.08990 * 110.57244 * 241.97933 * 23 22 20 50 50 H 1.09000 * 113.65789 * 332.13162 * 25 24 23 51 51 H 1.09001 * 113.66351 * 103.18488 * 25 24 23 52 52 H 1.09004 * 113.58415 * 270.11639 * 26 25 24 53 53 H 1.09003 * 113.58761 * 139.30759 * 26 25 24 54 54 H 1.08997 * 113.65713 * 256.78997 * 27 24 23 55 55 H 1.08998 * 113.66319 * 27.83987 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 3.5467 1.4402 0.7001 6 1 1.4466 2.6527 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0012 -2.5734 0.1249 11 6 3.6774 -3.3567 -1.0749 12 6 4.6409 -2.9831 -2.2031 13 7 4.2534 -3.6888 -3.4318 14 6 4.4404 -5.1397 -3.2873 15 6 3.9698 -5.8394 -4.5651 16 8 4.6860 -5.3099 -5.6841 17 6 4.5256 -3.8991 -5.8550 18 6 5.0020 -3.1798 -4.5902 19 6 3.4661 -3.2155 1.3330 20 6 4.2313 -2.7133 2.5590 21 1 5.2975 -2.9095 2.4457 22 6 3.6943 -3.3889 3.8410 23 6 3.7467 -2.2686 4.9068 24 6 4.2890 -1.0564 4.1359 25 6 5.7344 -0.6714 4.4493 26 6 5.2808 0.7941 4.3201 27 6 3.8630 0.3091 4.6735 28 8 3.9962 -1.2998 2.7539 29 1 -0.4850 0.8400 -0.0004 30 1 3.8753 -0.7617 -0.9310 31 1 3.8745 -0.6028 0.8418 32 1 3.7736 -4.4194 -0.8521 33 1 2.6547 -3.1415 -1.3843 34 1 4.6006 -1.9072 -2.3740 35 1 5.6551 -3.2689 -1.9245 36 1 5.4959 -5.3559 -3.1217 37 1 3.8573 -5.4993 -2.4396 38 1 2.9021 -5.6675 -4.7020 39 1 4.1594 -6.9097 -4.4851 40 1 3.4742 -3.6708 -6.0294 41 1 5.1169 -3.5657 -6.7079 42 1 4.8287 -2.1087 -4.6935 43 1 6.0664 -3.3647 -4.4455 44 1 2.4096 -2.9689 1.4379 45 1 3.5804 -4.2964 1.2510 46 1 2.6689 -3.7278 3.6933 47 1 4.3335 -4.2234 4.1295 48 1 2.7489 -2.0611 5.2938 49 1 4.4213 -2.5427 5.7178 50 1 6.0512 -0.9442 5.4559 51 1 6.4451 -0.9786 3.6821 52 1 5.3669 1.1897 3.3081 53 1 5.7162 1.4532 5.0713 54 1 3.0785 0.7853 4.0854 55 1 3.6535 0.3121 5.7431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878159396.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:44 Heat of formation + Delta-G solvation = -70.935357 kcal Electronic energy + Delta-G solvation = -31699.441208 eV Core-core repulsion = 27736.547535 eV Total energy + Delta-G solvation = -3962.893674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.38390 -40.56110 -38.90043 -37.12834 -36.31456 -34.45709 -33.04409 -32.19816 -31.28227 -30.36068 -28.61703 -26.81182 -26.52960 -25.44712 -24.94343 -23.95038 -22.80376 -21.74742 -21.34431 -21.11519 -20.11689 -19.03415 -17.66906 -17.36073 -17.12085 -16.77583 -16.59293 -16.34174 -16.17154 -15.99759 -15.87467 -15.65101 -15.55423 -15.31553 -14.74368 -14.49015 -14.28212 -13.98889 -13.86152 -13.70658 -13.42368 -13.24108 -13.14492 -12.87971 -12.79782 -12.61153 -12.58127 -12.40124 -12.32907 -12.19279 -11.97231 -11.85042 -11.79884 -11.71772 -11.56261 -11.36408 -11.29311 -11.24179 -10.95416 -10.70386 -10.65813 -10.28646 -9.36354 -8.95370 -8.26499 -6.24842 1.29032 1.32135 1.45820 2.35743 2.64101 2.93522 2.95081 3.11646 3.40284 3.64022 3.67401 3.88153 3.90972 3.94098 3.95900 4.02740 4.14844 4.17104 4.20494 4.24128 4.29178 4.34083 4.43956 4.47660 4.55861 4.58501 4.64784 4.65804 4.72469 4.79046 4.80747 4.82249 4.84983 4.89031 4.94504 4.97939 5.00383 5.01827 5.06575 5.10515 5.10604 5.20182 5.24216 5.30126 5.32724 5.50296 5.54487 5.62021 5.94245 6.01098 6.15981 6.17311 6.31568 6.39047 6.52537 6.78050 7.38935 8.90232 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.003470 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.397230 B = 8067.314620 C = 9321.548430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.017 3.983 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.250 1.250 6 H -0.288 1.288 7 C -0.517 4.517 8 H 0.033 0.967 9 C 0.165 3.835 10 N -0.526 5.526 11 C 0.068 3.932 12 C 0.081 3.919 13 N -0.554 5.554 14 C 0.018 3.982 15 C 0.064 3.936 16 O -0.400 6.400 17 C 0.066 3.934 18 C 0.019 3.981 19 C 0.062 3.938 20 C 0.089 3.911 21 H 0.074 0.926 22 C -0.144 4.144 23 C -0.130 4.130 24 C 0.058 3.942 25 C -0.138 4.138 26 C -0.136 4.136 27 C -0.137 4.137 28 O -0.358 6.358 29 H 0.261 0.739 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.020 0.980 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.121 0.879 40 H 0.054 0.946 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.026 0.974 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.102 0.898 48 H 0.066 0.934 49 H 0.104 0.896 50 H 0.116 0.884 51 H 0.063 0.937 52 H 0.054 0.946 53 H 0.090 0.910 54 H 0.041 0.959 55 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.176 -8.616 3.608 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.180 4.180 3 Si 0.759 3.241 4 H -0.197 1.197 5 H -0.174 1.174 6 H -0.214 1.214 7 C -0.556 4.556 8 H 0.051 0.949 9 C 0.038 3.962 10 N -0.248 5.248 11 C -0.060 4.060 12 C -0.047 4.047 13 N -0.280 5.280 14 C -0.110 4.110 15 C -0.013 4.013 16 O -0.319 6.319 17 C -0.011 4.011 18 C -0.109 4.109 19 C -0.066 4.066 20 C 0.031 3.969 21 H 0.092 0.908 22 C -0.182 4.182 23 C -0.167 4.167 24 C 0.018 3.982 25 C -0.176 4.176 26 C -0.173 4.173 27 C -0.174 4.174 28 O -0.278 6.278 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.120 0.880 48 H 0.085 0.915 49 H 0.123 0.877 50 H 0.134 0.866 51 H 0.082 0.918 52 H 0.073 0.927 53 H 0.109 0.891 54 H 0.060 0.940 55 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.102 -8.367 3.270 16.720 hybrid contribution -0.815 1.070 0.058 1.346 sum 13.286 -7.298 3.328 15.520 Atomic orbital electron populations 1.70070 1.07995 1.27474 1.53747 1.25654 0.95244 1.02564 0.94578 0.85904 0.79901 0.79686 0.78637 1.19706 1.17398 1.21400 1.21730 0.92614 0.92583 1.48673 0.94882 1.20095 0.91640 0.88196 0.96263 1.62334 1.57682 1.02925 1.01902 1.21888 0.97091 0.96733 0.90326 1.21791 0.96605 0.97897 0.88419 1.62085 1.57472 1.04508 1.03959 1.22849 1.00395 0.87759 0.99977 1.22779 0.95797 0.98810 0.83878 1.87924 1.72132 1.22858 1.48996 1.22754 1.01484 0.80129 0.96734 1.22801 0.96112 1.00668 0.91311 1.22184 0.97170 0.97625 0.89619 1.23034 0.98614 0.80975 0.94251 0.90805 1.22956 1.02118 0.99106 0.93993 1.22711 1.02137 0.93580 0.98306 1.22936 0.96502 0.95527 0.83255 1.23285 0.95454 0.95786 1.03052 1.22770 0.95998 0.97350 1.01173 1.23020 0.97550 0.95105 1.01745 1.89224 1.88352 1.25272 1.24945 0.93023 0.97261 0.93187 0.90819 0.96199 0.92514 0.93861 0.93753 0.89367 0.92813 0.86139 0.92774 0.86182 0.89782 0.93755 0.95600 0.89212 0.91999 0.87956 0.91493 0.87746 0.86572 0.91777 0.92707 0.89127 0.94020 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.39 13.96 21.45 0.30 -61.09 16 2 C 0.02 1.00 5.47 84.65 0.46 1.46 16 3 Si 0.93 47.23 27.57 68.60 1.89 49.12 16 4 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.25 -12.22 6.40 99.48 0.64 -11.58 16 6 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 7 C -0.52 -30.15 7.65 25.60 0.20 -29.96 16 8 H 0.03 2.14 6.42 -2.91 -0.02 2.12 16 9 C 0.17 8.18 3.82 85.56 0.33 8.51 16 10 N -0.53 -21.61 4.55 -900.81 -4.10 -25.72 16 11 C 0.07 2.59 4.68 86.30 0.40 2.99 16 12 C 0.08 2.73 5.13 86.30 0.44 3.18 16 13 N -0.55 -16.73 4.73 -895.23 -4.23 -20.96 16 14 C 0.02 0.45 5.43 86.31 0.47 0.92 16 15 C 0.06 1.42 7.01 72.01 0.50 1.93 16 16 O -0.40 -9.90 10.83 -148.98 -1.61 -11.51 16 17 C 0.07 1.48 7.01 72.02 0.50 1.99 16 18 C 0.02 0.49 5.65 86.32 0.49 0.98 16 19 C 0.06 2.38 4.57 86.30 0.39 2.77 16 20 C 0.09 2.95 3.53 31.12 0.11 3.06 16 21 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 22 C -0.14 -3.72 6.64 31.70 0.21 -3.51 16 23 C -0.13 -3.15 6.48 31.37 0.20 -2.95 16 24 C 0.06 1.72 1.13 -10.74 -0.01 1.70 16 25 C -0.14 -3.27 7.57 30.86 0.23 -3.03 16 26 C -0.14 -3.55 8.09 31.23 0.25 -3.30 16 27 C -0.14 -3.95 7.61 30.85 0.23 -3.71 16 28 O -0.36 -14.26 8.38 -148.98 -1.25 -15.51 16 29 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 30 H 0.01 0.47 6.37 -2.39 -0.02 0.46 16 31 H 0.05 2.60 4.36 -2.39 -0.01 2.59 16 32 H 0.07 2.40 6.14 -2.39 -0.01 2.39 16 33 H 0.02 0.92 6.58 -2.39 -0.02 0.91 16 34 H 0.06 2.15 6.66 -2.38 -0.02 2.14 16 35 H 0.04 1.36 8.12 -2.39 -0.02 1.34 16 36 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.09 2.16 6.48 -2.39 -0.02 2.14 16 38 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 43 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 44 H 0.03 1.22 5.96 -2.39 -0.01 1.21 16 45 H 0.09 2.83 7.55 -2.39 -0.02 2.82 16 46 H 0.06 1.76 7.87 -2.38 -0.02 1.74 16 47 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.07 1.70 8.12 -2.38 -0.02 1.68 16 49 H 0.10 1.81 7.85 -2.39 -0.02 1.79 16 50 H 0.12 1.96 7.97 -2.39 -0.02 1.94 16 51 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 53 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 54 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 55 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -73.04 406.78 -2.80 -75.84 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.77 Total: 26.79 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 5.43 Total: -16.97 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -8.03 Total: -107.77 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -2.86 Total: -27.02 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.89 Total: 49.12 kcal Total: -73.04 -2.80 -75.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159396.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.910 kcal (2) G-P(sol) polarization free energy of solvation -73.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds