Wall clock time and date at job start Sat Apr 11 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00548 * 2 1 4 4 H 1.48500 * 109.47111 * 270.00183 * 3 2 1 5 5 H 1.48498 * 109.47069 * 29.99967 * 3 2 1 6 6 H 1.48501 * 109.47190 * 150.00068 * 3 2 1 7 7 C 1.37879 * 119.99579 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00098 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00280 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47337 * 178.56026 * 9 7 2 11 11 C 1.46900 * 111.00000 * 288.84510 * 10 9 7 12 12 C 1.53000 * 109.47571 * 160.12695 * 11 10 9 13 13 N 1.46896 * 109.47387 * 185.17961 * 12 11 10 14 14 C 1.47018 * 110.99897 * 293.63472 * 13 12 11 15 15 C 1.53098 * 109.25667 * 177.60722 * 14 13 12 16 16 O 1.43014 * 109.25793 * 56.85016 * 15 14 13 17 17 C 1.43019 * 113.73900 * 301.33043 * 16 15 14 18 18 C 1.47015 * 110.99950 * 169.99986 * 13 12 11 19 19 C 1.46894 * 111.00241 * 164.89131 * 10 9 7 20 20 C 1.53003 * 109.47322 * 293.95269 * 19 10 9 21 21 H 1.09006 * 109.89749 * 59.48294 * 20 19 10 22 22 C 1.54454 * 109.83540 * 180.42051 * 20 19 10 23 23 C 1.55460 * 102.35909 * 140.86658 * 22 20 19 24 24 C 1.54089 * 100.80367 * 326.79964 * 23 22 20 25 25 C 1.52873 * 115.01976 * 265.37421 * 24 23 22 26 26 C 1.53944 * 86.91124 * 268.05610 * 25 24 23 27 27 C 1.52865 * 115.04814 * 165.24381 * 24 23 22 28 28 O 1.42648 * 106.35698 * 35.27471 * 24 23 22 29 29 H 0.97001 * 119.99317 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47099 * 58.55669 * 9 7 2 31 31 H 1.09003 * 109.46543 * 298.55402 * 9 7 2 32 32 H 1.09002 * 109.47255 * 280.12871 * 11 10 9 33 33 H 1.09004 * 109.47409 * 40.12600 * 11 10 9 34 34 H 1.09000 * 109.46958 * 305.18403 * 12 11 10 35 35 H 1.09004 * 109.46956 * 65.17663 * 12 11 10 36 36 H 1.08996 * 109.50390 * 297.54110 * 14 13 12 37 37 H 1.08997 * 109.50548 * 57.67266 * 14 13 12 38 38 H 1.09004 * 109.50358 * 296.91716 * 15 14 13 39 39 H 1.08995 * 109.50576 * 176.78380 * 15 14 13 40 40 H 1.09007 * 109.50542 * 298.73449 * 17 16 15 41 41 H 1.08997 * 109.50773 * 178.60775 * 17 16 15 42 42 H 1.08997 * 109.50738 * 302.32723 * 18 13 12 43 43 H 1.09002 * 109.50481 * 62.45623 * 18 13 12 44 44 H 1.09001 * 109.47483 * 173.95432 * 19 10 9 45 45 H 1.09000 * 109.47354 * 53.94841 * 19 10 9 46 46 H 1.08998 * 110.82353 * 259.08572 * 22 20 19 47 47 H 1.08998 * 110.82841 * 22.44839 * 22 20 19 48 48 H 1.09002 * 111.15357 * 208.90778 * 23 22 20 49 49 H 1.09005 * 111.14809 * 84.68344 * 23 22 20 50 50 H 1.08994 * 113.66238 * 22.58325 * 25 24 23 51 51 H 1.09005 * 113.65953 * 153.53164 * 25 24 23 52 52 H 1.08998 * 113.58858 * 89.87787 * 26 25 24 53 53 H 1.09001 * 113.59099 * 220.70021 * 26 25 24 54 54 H 1.09002 * 113.65933 * 206.35244 * 27 24 23 55 55 H 1.09003 * 113.65685 * 337.30675 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2050 -3.6156 -0.0360 11 6 2.8549 -3.7112 -1.3499 12 6 4.1502 -4.5152 -1.2211 13 7 4.8621 -4.5061 -2.5059 14 6 4.1052 -5.2370 -3.5328 15 6 4.8519 -5.1518 -4.8667 16 8 6.1754 -5.6674 -4.7001 17 6 6.9411 -4.9784 -3.7078 18 6 6.2156 -5.0617 -2.3623 19 6 1.5486 -4.8806 0.3200 20 6 1.1021 -4.8297 1.7825 21 1 0.4083 -4.0020 1.9300 22 6 0.4200 -6.1605 2.1688 23 6 0.9429 -6.3953 3.6139 24 6 2.3535 -5.7834 3.5136 25 6 3.4692 -6.7793 3.1965 26 6 3.6551 -6.9279 4.7174 27 6 3.0416 -5.5203 4.8530 28 8 2.2447 -4.6650 2.6348 29 1 -0.4849 0.8401 0.0004 30 1 0.6046 -2.5456 -0.8770 31 1 0.6442 -2.5683 0.9024 32 1 2.1857 -4.2102 -2.0508 33 1 3.0835 -2.7102 -1.7159 34 1 4.7808 -4.0675 -0.4530 35 1 3.9140 -5.5426 -0.9438 36 1 4.0059 -6.2814 -3.2373 37 1 3.1157 -4.7929 -3.6406 38 1 4.9043 -4.1118 -5.1887 39 1 4.3241 -5.7399 -5.6174 40 1 7.0542 -3.9333 -3.9962 41 1 7.9241 -5.4410 -3.6206 42 1 6.7665 -4.4897 -1.6157 43 1 6.1499 -6.1034 -2.0480 44 1 2.2488 -5.7046 0.1824 45 1 0.6794 -5.0316 -0.3201 46 1 -0.6650 -6.0562 2.1614 47 1 0.7349 -6.9648 1.5040 48 1 0.9911 -7.4590 3.8468 49 1 0.3339 -5.8620 4.3440 50 1 3.1184 -7.6882 2.7079 51 1 4.3257 -6.3309 2.6929 52 1 3.0423 -7.7149 5.1569 53 1 4.6991 -6.9813 5.0261 54 1 3.7787 -4.7181 4.8160 55 1 2.3488 -5.4212 5.6886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878159397.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:47 Heat of formation + Delta-G solvation = -76.165487 kcal Electronic energy + Delta-G solvation = -31459.127690 eV Core-core repulsion = 27496.007222 eV Total energy + Delta-G solvation = -3963.120469 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43581 -40.57200 -38.86260 -37.23166 -36.38495 -34.63415 -33.06091 -32.19452 -31.15989 -30.26708 -28.40080 -26.77776 -26.55976 -25.36772 -25.01208 -23.82519 -23.36521 -22.16118 -21.43774 -21.10446 -19.69716 -18.66889 -17.66245 -17.46265 -17.13327 -17.02922 -16.69829 -16.41289 -16.23920 -16.00658 -15.91143 -15.72563 -15.48801 -15.07142 -14.72559 -14.33984 -14.26037 -14.14557 -13.87410 -13.57907 -13.29392 -13.29228 -13.11517 -12.91232 -12.86317 -12.60720 -12.59950 -12.54671 -12.35842 -12.17514 -12.12996 -11.94558 -11.87219 -11.81474 -11.63836 -11.45079 -11.34356 -11.20063 -11.10194 -10.68876 -10.57545 -10.15680 -9.39805 -8.92272 -8.18370 -6.26247 1.38812 1.40176 1.51998 2.40316 2.61746 2.90410 2.96446 3.13823 3.43536 3.56093 3.69791 3.73837 3.82826 3.90599 3.92443 3.96403 4.01792 4.10990 4.12125 4.18502 4.24066 4.31575 4.39492 4.46544 4.49316 4.50370 4.59609 4.62617 4.69386 4.72393 4.80667 4.81433 4.84031 4.86566 4.88241 4.93307 4.95042 4.96532 5.02408 5.03729 5.08173 5.13600 5.21151 5.27101 5.31165 5.40453 5.53040 5.68181 5.94287 5.99114 6.10344 6.15856 6.39154 6.43617 6.70287 6.88576 7.42149 8.92298 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.005941 B = 0.004708 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4711.852907 B = 5946.249943 C = 9313.452911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.214 3.786 10 N -0.532 5.532 11 C 0.077 3.923 12 C 0.087 3.913 13 N -0.550 5.550 14 C 0.017 3.983 15 C 0.066 3.934 16 O -0.401 6.401 17 C 0.065 3.935 18 C 0.020 3.980 19 C 0.054 3.946 20 C 0.085 3.915 21 H 0.046 0.954 22 C -0.141 4.141 23 C -0.119 4.119 24 C 0.058 3.942 25 C -0.146 4.146 26 C -0.120 4.120 27 C -0.136 4.136 28 O -0.368 6.368 29 H 0.263 0.737 30 H -0.041 1.041 31 H 0.009 0.991 32 H 0.020 0.980 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.057 0.943 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.041 0.959 44 H 0.079 0.921 45 H 0.029 0.971 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.110 0.890 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.102 0.898 53 H 0.080 0.920 54 H 0.069 0.931 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.011 -18.579 1.429 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.088 3.912 10 N -0.256 5.256 11 C -0.052 4.052 12 C -0.041 4.041 13 N -0.276 5.276 14 C -0.111 4.111 15 C -0.011 4.011 16 O -0.319 6.319 17 C -0.012 4.012 18 C -0.108 4.108 19 C -0.074 4.074 20 C 0.027 3.973 21 H 0.064 0.936 22 C -0.179 4.179 23 C -0.156 4.156 24 C 0.019 3.981 25 C -0.184 4.184 26 C -0.158 4.158 27 C -0.174 4.174 28 O -0.287 6.287 29 H 0.072 0.928 30 H -0.024 1.024 31 H 0.027 0.973 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.076 0.924 41 H 0.139 0.861 42 H 0.109 0.891 43 H 0.060 0.940 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.128 0.872 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.087 0.913 52 H 0.121 0.879 53 H 0.098 0.902 54 H 0.088 0.912 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.489 -17.859 1.509 19.832 hybrid contribution -1.078 0.644 -0.239 1.278 sum 7.411 -17.215 1.271 18.786 Atomic orbital electron populations 1.70072 1.07505 1.27664 1.52294 1.25813 0.95701 1.02819 0.95071 0.85479 0.78564 0.78771 0.78406 1.19753 1.20589 1.19407 1.21391 0.93271 0.91229 1.49206 0.92740 1.19349 0.89834 0.88737 0.93324 1.61847 1.32245 1.03275 1.28258 1.21803 0.94246 0.99894 0.89208 1.21783 0.94623 0.97609 0.90108 1.62095 1.03247 1.54595 1.07622 1.22839 0.98447 0.96545 0.93298 1.22736 0.82607 1.00023 0.95688 1.87931 1.25955 1.59153 1.58895 1.22789 0.94928 0.97736 0.85747 1.22816 0.89769 0.98536 0.99658 1.22457 0.97007 0.92674 0.95273 1.22756 0.87254 0.97580 0.89747 0.93617 1.23144 1.01467 0.95839 0.97433 1.22889 0.93474 1.02934 0.96342 1.23519 0.95608 0.87491 0.91479 1.23259 0.98392 0.98887 0.97822 1.22729 1.02007 0.96057 0.94977 1.23114 0.99915 0.98614 0.95725 1.88520 1.47202 1.42937 1.50024 0.92806 1.02353 0.97294 0.96152 0.92283 0.91305 0.94881 0.94069 0.90127 0.92510 0.86474 0.92420 0.86108 0.89131 0.94038 0.90248 0.95316 0.89254 0.89115 0.87160 0.90307 0.90171 0.91265 0.87922 0.90169 0.91235 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.96 46.29 29.54 68.60 2.03 48.32 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.51 -30.40 8.30 25.60 0.21 -30.19 16 8 H 0.05 3.26 7.70 -2.91 -0.02 3.24 16 9 C 0.21 11.78 4.59 85.56 0.39 12.17 16 10 N -0.53 -23.96 4.29 -900.81 -3.86 -27.82 16 11 C 0.08 3.12 4.63 86.30 0.40 3.52 16 12 C 0.09 2.88 4.99 86.30 0.43 3.31 16 13 N -0.55 -16.01 4.73 -895.22 -4.23 -20.24 16 14 C 0.02 0.43 5.44 86.31 0.47 0.90 16 15 C 0.07 1.48 7.01 72.01 0.50 1.98 16 16 O -0.40 -9.59 10.83 -148.98 -1.61 -11.21 16 17 C 0.06 1.34 7.01 72.01 0.50 1.85 16 18 C 0.02 0.48 5.64 86.31 0.49 0.96 16 19 C 0.05 2.00 4.34 86.31 0.37 2.38 16 20 C 0.08 3.03 3.44 31.09 0.11 3.13 16 21 H 0.05 1.97 6.30 -2.38 -0.02 1.96 16 22 C -0.14 -3.44 6.56 31.93 0.21 -3.24 16 23 C -0.12 -2.53 6.21 31.81 0.20 -2.34 16 24 C 0.06 1.56 1.44 -10.52 -0.02 1.55 16 25 C -0.15 -3.23 7.57 30.87 0.23 -3.00 16 26 C -0.12 -2.10 7.92 31.30 0.25 -1.85 16 27 C -0.14 -3.21 7.64 30.94 0.24 -2.97 16 28 O -0.37 -13.98 10.72 -148.98 -1.60 -15.58 16 29 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 30 H -0.04 -2.46 8.06 -2.39 -0.02 -2.48 16 31 H 0.01 0.54 5.96 -2.39 -0.01 0.52 16 32 H 0.02 0.79 6.62 -2.39 -0.02 0.77 16 33 H 0.06 2.78 7.01 -2.38 -0.02 2.76 16 34 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 35 H 0.03 1.03 6.94 -2.38 -0.02 1.02 16 36 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 2.19 6.49 -2.39 -0.02 2.18 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.09 2.05 8.09 -2.39 -0.02 2.03 16 43 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 2.61 6.73 -2.39 -0.02 2.59 16 45 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 46 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.09 1.90 7.85 -2.39 -0.02 1.88 16 48 H 0.11 1.65 8.04 -2.39 -0.02 1.63 16 49 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 50 H 0.08 1.50 8.11 -2.39 -0.02 1.48 16 51 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 52 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 53 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 54 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 55 H 0.08 1.67 8.11 -2.39 -0.02 1.65 16 Total: -1.00 -71.17 417.09 -2.71 -73.88 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.83 Total: 21.11 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 5.46 Total: -11.15 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -7.81 Total: -105.37 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -3.21 Total: -26.78 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -71.17 -2.71 -73.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159397.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.290 kcal (2) G-P(sol) polarization free energy of solvation -71.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds