Wall clock time and date at job start Sat Apr 11 2020 05:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48500 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47142 * 299.99739 * 3 2 1 6 6 H 1.48496 * 109.47199 * 60.00165 * 3 2 1 7 7 C 1.37884 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00081 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46863 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47046 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.47018 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47301 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99625 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00359 * 179.97438 * 13 12 11 16 16 C 1.46922 * 120.62812 * 359.72729 * 15 13 12 17 17 C 1.53626 * 108.54680 * 126.36632 * 16 15 13 18 18 C 1.53048 * 109.23860 * 54.85196 * 17 16 15 19 19 C 1.53004 * 109.44488 * 178.50035 * 18 17 16 20 20 O 1.42902 * 109.46797 * 294.83554 * 19 18 17 21 21 N 1.46900 * 109.45873 * 58.53583 * 18 17 16 22 22 C 1.46898 * 110.99716 * 178.52032 * 21 18 17 23 23 C 1.52998 * 109.47183 * 182.35848 * 22 21 18 24 24 C 1.52999 * 117.50006 * 243.74555 * 23 22 21 25 25 C 1.52997 * 117.49847 * 175.08254 * 23 22 21 26 26 C 1.53036 * 109.53756 * 298.51092 * 18 17 16 27 27 C 1.46928 * 120.63019 * 180.02562 * 15 13 12 28 28 H 0.96994 * 119.99842 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47366 * 59.99936 * 9 7 2 30 30 H 1.09003 * 109.46744 * 299.99783 * 9 7 2 31 31 H 1.09000 * 109.47392 * 59.99694 * 10 9 7 32 32 H 1.09004 * 109.46638 * 299.99674 * 10 9 7 33 33 H 1.09004 * 109.46723 * 300.00021 * 11 10 9 34 34 H 1.08999 * 109.46909 * 59.99345 * 11 10 9 35 35 H 1.08994 * 109.47541 * 299.99802 * 12 11 10 36 36 H 1.09004 * 109.46977 * 60.00048 * 12 11 10 37 37 H 1.09005 * 109.58598 * 246.19778 * 16 15 13 38 38 H 1.08999 * 109.59189 * 6.62373 * 16 15 13 39 39 H 1.09000 * 109.63125 * 294.86149 * 17 16 15 40 40 H 1.08999 * 109.46250 * 174.73887 * 17 16 15 41 41 H 1.09004 * 109.47203 * 54.83287 * 19 18 17 42 42 H 1.08994 * 109.46757 * 174.83281 * 19 18 17 43 43 H 0.96708 * 113.99314 * 180.02562 * 20 19 18 44 44 H 1.00896 * 110.99866 * 302.46823 * 21 18 17 45 45 H 1.09002 * 109.47107 * 302.35543 * 22 21 18 46 46 H 1.08996 * 109.47263 * 62.35269 * 22 21 18 47 47 H 1.08998 * 115.54804 * 29.41407 * 23 22 21 48 48 H 1.09001 * 117.49732 * 0.02562 * 24 23 22 49 49 H 1.09000 * 117.50106 * 145.01509 * 24 23 22 50 50 H 1.09000 * 117.49964 * 214.97825 * 25 23 22 51 51 H 1.08995 * 117.50032 * 359.97438 * 25 23 22 52 52 H 1.09002 * 109.50106 * 301.41392 * 26 18 17 53 53 H 1.09006 * 109.49840 * 181.31879 * 26 18 17 54 54 H 1.08993 * 109.58406 * 353.37487 * 27 15 13 55 55 H 1.08998 * 109.58425 * 113.65832 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9872 0.0012 12 6 2.4745 -6.1500 0.0018 13 6 1.7210 -7.4552 0.0018 14 8 0.5082 -7.4552 0.0018 15 7 2.3948 -8.6224 0.0018 16 6 3.8639 -8.6385 -0.0042 17 6 4.3479 -9.5046 1.1687 18 6 3.7040 -10.8897 1.0721 19 6 4.2118 -11.7684 2.2171 20 8 5.6138 -11.9947 2.0582 21 7 4.0598 -11.5063 -0.2129 22 6 3.4869 -12.8542 -0.3265 23 6 3.9267 -13.4854 -1.6490 24 6 2.8377 -13.8097 -2.6736 25 6 3.5270 -14.9399 -1.9049 26 6 2.1827 -10.7547 1.1691 27 6 1.6742 -9.9028 0.0013 28 1 -0.4849 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8713 -3.6040 0.8922 32 1 2.8726 -3.6047 -0.8878 33 1 0.8526 -5.0447 0.8905 34 1 0.8545 -5.0450 -0.8894 35 1 3.1017 -6.0923 -0.8876 36 1 3.1005 -6.0923 0.8923 37 1 4.2209 -9.0592 -0.9443 38 1 4.2411 -7.6223 0.1103 39 1 4.0642 -9.0364 2.1112 40 1 5.4325 -9.6037 1.1237 41 1 4.0301 -11.2672 3.1679 42 1 3.6857 -12.7229 2.2033 43 1 6.0041 -12.5460 2.7502 44 1 3.7714 -10.9246 -0.9852 45 1 3.8364 -13.4686 0.5033 46 1 2.3992 -12.7903 -0.2983 47 1 4.8931 -13.1546 -2.0294 48 1 1.8080 -13.5730 -2.4056 49 1 3.0877 -13.6926 -3.7280 50 1 4.2302 -15.5660 -2.4541 51 1 2.9511 -15.4472 -1.1310 52 1 1.9193 -10.2748 2.1116 53 1 1.7260 -11.7435 1.1238 54 1 0.6061 -9.7209 0.1194 55 1 1.8545 -10.4231 -0.9394 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898110295.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:32:08 Heat of formation + Delta-G solvation = -100.062013 kcal Electronic energy + Delta-G solvation = -30041.552805 eV Core-core repulsion = 26077.396105 eV Total energy + Delta-G solvation = -3964.156700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.69621 -40.05490 -38.19913 -37.25318 -36.62944 -35.41759 -34.62749 -32.45629 -32.24294 -31.17614 -28.60493 -27.28081 -26.63591 -24.77556 -24.29191 -23.34530 -23.22036 -21.78665 -21.41515 -20.71289 -19.40536 -18.46192 -18.26827 -17.96360 -17.37871 -16.95781 -16.88350 -16.46355 -16.37135 -15.92962 -15.60565 -15.48227 -15.04997 -14.89943 -14.68150 -14.51415 -14.40124 -13.99264 -13.72503 -13.68096 -13.55999 -13.40408 -13.26672 -13.10180 -12.84381 -12.51348 -12.41031 -12.32692 -12.26159 -12.15424 -12.14508 -11.95477 -11.86636 -11.55240 -11.38232 -11.31639 -11.15638 -11.10354 -10.94241 -10.73296 -10.65213 -10.55490 -9.69768 -9.26965 -8.18528 -6.30602 1.40707 1.41658 1.55201 1.59730 1.94246 2.42189 2.84076 3.08372 3.14218 3.36901 3.50123 3.68677 3.78499 3.93752 3.99573 4.03507 4.04440 4.09744 4.13584 4.16183 4.26624 4.34140 4.38511 4.50724 4.51110 4.53603 4.63663 4.66371 4.70254 4.73104 4.78076 4.80026 4.82029 4.86396 4.88018 4.92666 4.98879 5.04708 5.12947 5.18224 5.24623 5.26364 5.33256 5.37022 5.38729 5.55084 5.57765 5.78223 5.88301 6.15083 6.25612 6.32402 6.43829 6.88027 7.01761 7.15272 7.39008 8.93903 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.001801 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.649008 B =15538.886495 C =16034.240839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.095 4.095 11 C -0.095 4.095 12 C -0.127 4.127 13 C 0.512 3.488 14 O -0.589 6.589 15 N -0.609 5.609 16 C 0.099 3.901 17 C -0.112 4.112 18 C 0.122 3.878 19 C 0.091 3.909 20 O -0.569 6.569 21 N -0.665 5.665 22 C 0.091 3.909 23 C -0.152 4.152 24 C -0.189 4.189 25 C -0.173 4.173 26 C -0.155 4.155 27 C 0.111 3.889 28 H 0.262 0.738 29 H -0.016 1.016 30 H -0.016 1.016 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.389 0.611 44 H 0.339 0.661 45 H 0.076 0.924 46 H 0.033 0.967 47 H 0.104 0.896 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.099 0.901 51 H 0.098 0.902 52 H 0.069 0.931 53 H 0.088 0.912 54 H 0.071 0.929 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.353 -34.328 1.801 36.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.133 4.133 12 C -0.167 4.167 13 C 0.302 3.698 14 O -0.469 6.469 15 N -0.342 5.342 16 C -0.023 4.023 17 C -0.150 4.150 18 C 0.030 3.970 19 C 0.013 3.987 20 O -0.375 6.375 21 N -0.297 5.297 22 C -0.038 4.038 23 C -0.171 4.171 24 C -0.226 4.226 25 C -0.211 4.211 26 C -0.195 4.195 27 C -0.011 4.011 28 H 0.071 0.929 29 H 0.003 0.997 30 H 0.003 0.997 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.237 0.763 44 H 0.159 0.841 45 H 0.094 0.906 46 H 0.051 0.949 47 H 0.122 0.878 48 H 0.110 0.890 49 H 0.113 0.887 50 H 0.117 0.883 51 H 0.116 0.884 52 H 0.088 0.912 53 H 0.107 0.893 54 H 0.089 0.911 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.119 -34.089 1.491 36.557 hybrid contribution -1.343 0.830 0.298 1.607 sum 11.777 -33.259 1.789 35.328 Atomic orbital electron populations 1.70141 1.08066 1.27660 1.51966 1.26103 0.95795 1.03760 0.94813 0.85324 0.79208 0.78382 0.77663 1.18062 1.20502 1.20473 1.21789 0.93776 0.92189 1.50093 0.91519 1.19066 0.94705 0.93838 0.94304 1.21446 0.97803 0.92655 1.01350 1.21241 0.97444 0.93663 1.00925 1.21701 0.98989 0.89629 1.06338 1.21216 0.87546 0.86576 0.74432 1.90679 1.16379 1.87966 1.51874 1.48229 1.07990 1.05033 1.72995 1.22140 0.77262 1.02969 0.99921 1.21924 1.01983 0.92969 0.98174 1.20889 0.91268 0.94381 0.90431 1.22135 0.82681 0.97778 0.96140 1.86560 1.21641 1.74843 1.54447 1.60574 1.62817 1.03294 1.03001 1.21529 0.96000 0.90088 0.96160 1.22259 0.99569 0.98441 0.96815 1.23120 0.97553 1.04093 0.97793 1.22990 1.03714 0.91010 1.03360 1.22515 0.97258 1.00703 0.99025 1.21501 0.97401 0.83521 0.98712 0.92883 0.99732 0.99723 0.92021 0.92037 0.93964 0.93961 0.86493 0.86531 0.89631 0.87730 0.91244 0.88843 0.92906 0.93150 0.76288 0.84070 0.90560 0.94921 0.87810 0.88982 0.88732 0.88271 0.88393 0.91241 0.89335 0.91068 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.38 13.29 21.45 0.28 -59.09 16 2 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 3 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.02 1.00 4.97 29.85 0.15 1.15 16 10 C -0.10 -3.92 5.15 30.60 0.16 -3.76 16 11 C -0.09 -3.49 4.50 30.59 0.14 -3.35 16 12 C -0.13 -3.25 4.05 29.85 0.12 -3.13 16 13 C 0.51 14.41 7.70 87.66 0.67 15.08 16 14 O -0.59 -22.41 15.39 -3.03 -0.05 -22.46 16 15 N -0.61 -12.11 2.97 -817.98 -2.43 -14.53 16 16 C 0.10 1.35 5.92 86.51 0.51 1.86 16 17 C -0.11 -1.43 5.01 30.82 0.15 -1.28 16 18 C 0.12 1.46 0.46 3.56 0.00 1.46 16 19 C 0.09 0.93 5.34 71.98 0.38 1.32 16 20 O -0.57 -6.59 12.94 -148.98 -1.93 -8.52 16 21 N -0.66 -8.18 5.69 -470.04 -2.67 -10.85 16 22 C 0.09 1.02 5.17 86.30 0.45 1.46 16 23 C -0.15 -1.75 5.97 -10.80 -0.06 -1.82 16 24 C -0.19 -2.06 10.18 30.62 0.31 -1.75 16 25 C -0.17 -1.71 10.25 30.62 0.31 -1.39 16 26 C -0.15 -2.07 4.52 30.69 0.14 -1.93 16 27 C 0.11 2.01 5.99 86.38 0.52 2.53 16 28 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 29 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 30 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.04 1.70 8.10 -2.38 -0.02 1.69 16 34 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 35 H 0.12 2.42 7.93 -2.39 -0.02 2.40 16 36 H 0.12 2.41 7.70 -2.38 -0.02 2.39 16 37 H 0.09 1.02 6.86 -2.38 -0.02 1.00 16 38 H 0.10 1.24 5.93 -2.39 -0.01 1.22 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.26 7.79 -2.39 -0.02 1.25 16 41 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.05 0.44 6.62 -2.39 -0.02 0.42 16 43 H 0.39 1.46 9.12 -74.05 -0.68 0.78 16 44 H 0.34 4.37 5.34 -89.70 -0.48 3.89 16 45 H 0.08 0.88 6.26 -2.39 -0.01 0.86 16 46 H 0.03 0.36 6.22 -2.39 -0.01 0.34 16 47 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.09 1.00 8.03 -2.39 -0.02 0.98 16 49 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.09 0.98 6.56 -2.38 -0.02 0.96 16 54 H 0.07 1.68 7.00 -2.39 -0.02 1.66 16 55 H 0.07 1.15 7.00 -2.39 -0.02 1.14 16 Total: -1.00 -76.96 421.08 -0.39 -77.35 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -0.28 Total: 15.89 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 4.65 Total: -24.88 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -4.81 Total: -84.48 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -1.97 Total: -30.98 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -76.96 -0.39 -77.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898110295.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.715 kcal (2) G-P(sol) polarization free energy of solvation -76.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds