Wall clock time and date at job start Sat Apr 11 2020 05:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47131 * 2 1 4 4 C 1.53002 * 109.46969 * 60.00062 * 3 2 1 5 5 C 1.53005 * 109.47056 * 300.00368 * 3 2 1 6 6 C 1.52997 * 109.47131 * 179.97438 * 3 2 1 7 7 C 1.52999 * 109.46991 * 60.00689 * 6 3 2 8 8 C 1.52997 * 109.46991 * 180.02562 * 7 6 3 9 9 C 1.52996 * 109.47131 * 299.99311 * 8 7 6 10 10 C 1.52997 * 109.47131 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.47329 * 65.00103 * 10 9 8 12 12 O 1.21286 * 119.99561 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00007 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99502 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46980 * 179.97438 * 14 13 11 16 16 O 1.21291 * 119.99992 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00323 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00389 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00087 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00383 * 180.02562 * 18 17 15 21 21 N 1.31405 * 120.00402 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99702 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47070 * 89.99928 * 22 20 18 24 24 H 1.48497 * 109.47226 * 209.99825 * 22 20 18 25 25 H 1.48501 * 109.47287 * 330.00057 * 22 20 18 26 26 C 1.53002 * 109.46972 * 60.00459 * 9 8 7 27 27 C 1.52997 * 109.46817 * 299.99733 * 26 9 8 28 28 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99495 * 1 2 3 30 30 H 1.09001 * 109.47502 * 60.00153 * 1 2 3 31 31 H 1.09001 * 109.46832 * 240.00325 * 2 1 3 32 32 H 1.08992 * 109.47303 * 120.00621 * 2 1 3 33 33 H 1.09002 * 109.47067 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47312 * 299.99939 * 4 3 2 35 35 H 1.09004 * 109.46930 * 59.99996 * 4 3 2 36 36 H 1.08998 * 109.47061 * 299.99160 * 5 3 2 37 37 H 1.09000 * 109.47360 * 59.99978 * 5 3 2 38 38 H 1.09002 * 109.46935 * 179.97438 * 5 3 2 39 39 H 1.08993 * 109.47194 * 299.99846 * 6 3 2 40 40 H 1.09002 * 109.46719 * 299.99711 * 7 6 3 41 41 H 1.08993 * 109.47839 * 59.99553 * 7 6 3 42 42 H 1.09001 * 109.47289 * 179.97438 * 8 7 6 43 43 H 1.09000 * 109.47611 * 59.99933 * 8 7 6 44 44 H 1.08996 * 109.47452 * 300.00000 * 9 8 7 45 45 H 1.09000 * 109.47325 * 185.00280 * 10 9 8 46 46 H 1.09006 * 109.47500 * 305.00368 * 10 9 8 47 47 H 0.96993 * 120.00257 * 359.97438 * 13 11 10 48 48 H 1.09000 * 109.47497 * 299.99445 * 14 13 11 49 49 H 1.09002 * 109.47783 * 60.00143 * 14 13 11 50 50 H 0.97005 * 119.99439 * 0.02562 * 17 15 14 51 51 H 0.96998 * 120.00383 * 179.97438 * 21 20 18 52 52 H 1.09002 * 109.47070 * 179.97438 * 26 9 8 53 53 H 1.08996 * 109.47407 * 59.99513 * 26 9 8 54 54 H 1.09001 * 109.47502 * 300.00518 * 27 26 9 55 55 H 1.09001 * 109.47289 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1637 -1.2492 6 6 3.5699 1.4425 0.0006 7 6 4.0804 0.7212 -1.2484 8 6 5.6104 0.7206 -1.2474 9 6 6.1209 2.1629 -1.2471 10 6 7.6509 2.1623 -1.2455 11 6 8.1544 1.5615 -2.5326 12 8 7.3670 1.1725 -3.3690 13 7 9.4797 1.4574 -2.7546 14 6 9.9690 0.8738 -4.0060 15 6 11.4761 0.8743 -4.0050 16 8 12.0817 1.3188 -3.0527 17 7 12.1509 0.3808 -5.0621 18 6 13.5218 0.3817 -5.0614 19 1 14.0611 0.7775 -4.2135 20 6 14.2176 -0.1266 -6.1514 21 7 15.5316 -0.1253 -6.1510 22 14 13.2848 -0.8119 -7.6177 23 1 13.0366 0.2751 -8.5984 24 1 14.0887 -1.8831 -8.2591 25 1 11.9876 -1.3724 -7.1612 26 6 5.6105 2.8843 0.0019 27 6 4.0805 2.8848 0.0010 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8898 33 1 1.8937 3.1912 1.2495 34 1 0.4399 2.1637 1.2493 35 1 1.8933 1.6498 2.1393 36 1 1.8933 1.6500 -2.1392 37 1 0.4399 2.1638 -1.2492 38 1 1.8928 3.1916 -1.2490 39 1 3.9329 0.9288 0.8908 40 1 3.7171 -0.3065 -1.2484 41 1 3.7175 1.2348 -2.1385 42 1 5.9741 0.2064 -2.1370 43 1 5.9731 0.2066 -0.3573 44 1 5.7584 2.6769 -2.1372 45 1 8.0145 3.1860 -1.1556 46 1 8.0132 1.5728 -0.4032 47 1 10.1094 1.7695 -2.0861 48 1 9.6058 -0.1499 -4.0961 49 1 9.6065 1.4634 -4.8482 50 1 11.6665 0.0256 -5.8238 51 1 16.0173 -0.4805 -6.9118 52 1 5.9745 3.9117 0.0024 53 1 5.9730 2.3703 0.8921 54 1 3.7178 3.3988 -0.8892 55 1 3.7167 3.3991 0.8905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343563893.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:33:09 Heat of formation + Delta-G solvation = -137.728456 kcal Electronic energy + Delta-G solvation = -29751.490438 eV Core-core repulsion = 25785.700399 eV Total energy + Delta-G solvation = -3965.790040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33060 -40.64569 -39.92063 -37.40792 -36.27742 -35.26012 -33.85264 -33.21539 -31.81305 -30.71821 -29.57647 -28.15778 -27.61821 -26.10531 -25.05280 -23.16761 -22.54211 -21.47886 -21.24702 -20.66082 -20.42082 -18.99552 -18.36035 -17.37663 -16.98798 -16.87718 -16.54353 -16.42877 -16.02900 -15.58003 -15.53755 -15.33307 -14.99641 -14.91447 -14.81436 -14.48451 -14.28612 -14.03541 -13.97607 -13.78321 -13.42450 -13.23610 -13.11585 -12.98131 -12.90017 -12.69119 -12.61808 -12.46342 -12.30656 -12.15033 -12.01874 -11.86734 -11.76283 -11.60013 -11.59685 -11.38825 -11.27748 -11.01598 -10.99853 -10.67112 -10.57209 -10.43715 -10.34370 -10.09362 -8.46948 -6.08993 1.29611 1.32527 1.42399 1.66945 1.79340 2.09277 2.19150 2.88959 3.09237 3.68240 3.74795 3.81195 3.90589 3.97973 4.02259 4.09624 4.22661 4.36288 4.39998 4.43994 4.44992 4.55829 4.58585 4.62353 4.65244 4.72076 4.72536 4.75650 4.82476 4.87185 4.91951 4.95006 5.06331 5.13521 5.16179 5.17886 5.23077 5.23514 5.26433 5.30765 5.36024 5.38133 5.39858 5.44244 5.47800 5.57395 5.58705 5.62524 5.74502 5.79455 5.86950 6.46926 6.57166 6.76947 7.22141 7.30621 7.76746 8.69463 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026643 B = 0.001746 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.671719 B =16030.494211 C =16698.392548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.057 4.057 4 C -0.142 4.142 5 C -0.146 4.146 6 C -0.069 4.069 7 C -0.109 4.109 8 C -0.119 4.119 9 C -0.064 4.064 10 C -0.132 4.132 11 C 0.511 3.489 12 O -0.573 6.573 13 N -0.715 5.715 14 C 0.118 3.882 15 C 0.444 3.556 16 O -0.614 6.614 17 N -0.579 5.579 18 C -0.333 4.333 19 H 0.063 0.937 20 C -0.007 4.007 21 N -0.925 5.925 22 Si 0.959 3.041 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.234 1.234 26 C -0.110 4.110 27 C -0.113 4.113 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.413 0.587 48 H 0.100 0.900 49 H 0.101 0.899 50 H 0.391 0.609 51 H 0.281 0.719 52 H 0.071 0.929 53 H 0.069 0.931 54 H 0.060 0.940 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.897 3.590 12.370 34.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.057 4.057 4 C -0.199 4.199 5 C -0.203 4.203 6 C -0.088 4.088 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.083 4.083 10 C -0.172 4.172 11 C 0.300 3.700 12 O -0.453 6.453 13 N -0.370 5.370 14 C -0.010 4.010 15 C 0.232 3.768 16 O -0.500 6.500 17 N -0.218 5.218 18 C -0.462 4.462 19 H 0.082 0.918 20 C -0.207 4.207 21 N -0.565 5.565 22 Si 0.779 3.221 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.157 1.157 26 C -0.148 4.148 27 C -0.151 4.151 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.251 0.749 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.227 0.773 51 H 0.091 0.909 52 H 0.089 0.911 53 H 0.088 0.912 54 H 0.078 0.922 55 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -31.829 3.558 12.304 34.309 hybrid contribution 0.831 -0.468 -0.884 1.300 sum -30.998 3.090 11.420 33.179 Atomic orbital electron populations 1.21879 0.95633 1.01483 1.02122 1.21619 0.96144 0.96017 1.01575 1.20519 0.94213 0.95128 0.95813 1.21955 1.01077 1.00347 0.96569 1.22015 1.00914 1.00265 0.97076 1.21125 0.93979 0.96108 0.97570 1.21600 0.94675 1.00154 0.98220 1.21659 0.96158 0.96380 1.01412 1.20847 0.91769 0.96723 0.98942 1.21829 0.97715 1.03578 0.94046 1.21348 0.80869 0.77966 0.89856 1.90643 1.55659 1.50663 1.48315 1.45873 1.07916 1.63030 1.20131 1.20837 0.89364 1.01386 0.89405 1.20559 0.90154 0.82561 0.83552 1.90523 1.70859 1.52080 1.36552 1.41945 1.06143 1.55737 1.18020 1.19037 0.80990 1.40940 1.05213 0.91843 1.26055 0.96419 0.96923 1.01323 1.69773 1.07978 1.45722 1.32979 0.85449 0.79532 0.79231 0.77935 1.18073 1.19749 1.15745 1.21579 0.95960 1.00465 0.96783 1.21664 0.94828 0.96314 1.02250 0.93043 0.92100 0.92548 0.92500 0.92309 0.92157 0.92249 0.92797 0.93286 0.92295 0.92430 0.91536 0.92333 0.92660 0.92833 0.92351 0.92211 0.86933 0.87203 0.74931 0.88234 0.88115 0.77286 0.90899 0.91066 0.91246 0.92151 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.21 71.98 0.66 -0.98 16 2 C -0.12 -1.42 4.64 30.59 0.14 -1.28 16 3 C -0.06 -0.67 0.35 -52.18 -0.02 -0.69 16 4 C -0.14 -1.43 7.77 71.98 0.56 -0.87 16 5 C -0.15 -1.81 7.42 71.98 0.53 -1.28 16 6 C -0.07 -0.93 1.55 -10.79 -0.02 -0.94 16 7 C -0.11 -1.87 4.50 30.59 0.14 -1.73 16 8 C -0.12 -2.37 4.94 30.59 0.15 -2.22 16 9 C -0.06 -1.15 1.84 -10.79 -0.02 -1.17 16 10 C -0.13 -2.44 5.17 29.85 0.15 -2.28 16 11 C 0.51 13.76 7.55 87.66 0.66 14.42 16 12 O -0.57 -18.65 13.97 -3.05 -0.04 -18.69 16 13 N -0.72 -21.11 5.53 -466.77 -2.58 -23.69 16 14 C 0.12 3.84 6.15 85.63 0.53 4.37 16 15 C 0.44 19.34 7.85 87.66 0.69 20.03 16 16 O -0.61 -31.52 15.24 -3.06 -0.05 -31.57 16 17 N -0.58 -26.67 5.09 -306.99 -1.56 -28.23 16 18 C -0.33 -18.92 10.16 84.04 0.85 -18.07 16 19 H 0.06 4.26 7.39 -2.91 -0.02 4.23 16 20 C -0.01 -0.38 5.50 84.93 0.47 0.08 16 21 N -0.92 -54.28 13.96 21.66 0.30 -53.98 16 22 Si 0.96 38.16 27.74 68.60 1.90 40.06 16 23 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 26 C -0.11 -1.46 5.20 30.59 0.16 -1.30 16 27 C -0.11 -1.42 4.50 30.60 0.14 -1.28 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.58 6.43 -2.39 -0.02 0.57 16 30 H 0.06 0.60 6.43 -2.39 -0.02 0.59 16 31 H 0.06 0.79 6.43 -2.39 -0.02 0.78 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.57 6.43 -2.39 -0.02 0.56 16 34 H 0.06 0.56 6.43 -2.39 -0.02 0.54 16 35 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.05 0.70 6.43 -2.39 -0.02 0.69 16 37 H 0.06 0.66 6.43 -2.39 -0.02 0.65 16 38 H 0.06 0.70 6.43 -2.39 -0.02 0.69 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 1.01 6.43 -2.39 -0.02 0.99 16 41 H 0.05 1.05 6.43 -2.39 -0.02 1.03 16 42 H 0.05 1.40 5.95 -2.39 -0.01 1.38 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.30 7.96 -2.39 -0.02 1.28 16 45 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 47 H 0.41 12.20 7.44 -92.71 -0.69 11.51 16 48 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 49 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 50 H 0.39 15.19 5.76 -92.70 -0.53 14.66 16 51 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 52 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 54 H 0.06 0.83 6.43 -2.39 -0.02 0.81 16 55 H 0.07 0.78 6.43 -2.39 -0.02 0.77 16 Total: -1.00 -70.41 406.07 3.37 -67.04 By element: Atomic # 1 Polarization: 44.63 SS G_CDS: -0.38 Total: 44.25 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.78 Total: 4.81 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -3.84 Total: -105.90 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.09 Total: -50.26 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.90 Total: 40.06 kcal Total: -70.41 3.37 -67.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343563893.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.684 kcal (2) G-P(sol) polarization free energy of solvation -70.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds