Wall clock time and date at job start Sat Apr 11 2020 05:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47692 * 2 1 4 4 C 1.50700 * 109.47453 * 119.99877 * 2 1 3 5 5 O 1.21282 * 120.00346 * 119.99474 * 4 2 1 6 6 N 1.34785 * 119.99839 * 300.00337 * 4 2 1 7 7 C 1.46498 * 119.99912 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47006 * 179.97438 * 7 6 4 9 9 H 1.09003 * 109.49924 * 55.05729 * 8 7 6 10 10 C 1.53041 * 109.49852 * 175.15941 * 8 7 6 11 11 C 1.53039 * 109.53510 * 181.31689 * 10 8 7 12 12 C 1.53190 * 109.31286 * 298.63243 * 11 10 8 13 13 N 1.46924 * 108.77487 * 54.63716 * 12 11 10 14 14 C 1.36939 * 120.62850 * 126.36947 * 13 12 11 15 15 H 1.08002 * 120.00055 * 208.02287 * 14 13 12 16 16 C 1.38811 * 119.99947 * 28.02458 * 14 13 12 17 17 N 1.31619 * 120.00397 * 17.52042 * 16 14 13 18 18 Si 1.86807 * 119.99926 * 197.52253 * 16 14 13 19 19 H 1.48504 * 109.46859 * 94.06345 * 18 16 14 20 20 H 1.48498 * 109.47026 * 214.06684 * 18 16 14 21 21 H 1.48501 * 109.47178 * 334.06902 * 18 16 14 22 22 C 1.46920 * 118.74078 * 306.39266 * 13 12 11 23 23 C 1.52999 * 109.47262 * 239.99496 * 2 1 3 24 24 C 1.53173 * 109.54762 * 179.55716 * 23 2 1 25 25 C 1.53092 * 109.16482 * 183.15313 * 24 23 2 26 26 O 1.42903 * 109.41645 * 57.61251 * 25 24 23 27 27 C 1.42907 * 114.09232 * 298.84193 * 26 25 24 28 28 C 1.53092 * 109.41818 * 61.15958 * 27 26 25 29 29 H 1.09005 * 109.46717 * 300.00567 * 1 2 3 30 30 H 1.09006 * 109.47194 * 59.99996 * 1 2 3 31 31 H 1.08998 * 109.47332 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47658 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46569 * 299.99746 * 3 2 1 34 34 H 1.08992 * 109.47153 * 59.99349 * 3 2 1 35 35 H 0.96998 * 119.99662 * 359.97438 * 6 4 2 36 36 H 1.08998 * 109.47134 * 299.99325 * 7 6 4 37 37 H 1.09003 * 109.47534 * 59.99524 * 7 6 4 38 38 H 1.08998 * 109.45547 * 301.33759 * 10 8 7 39 39 H 1.09001 * 109.45561 * 61.29470 * 10 8 7 40 40 H 1.09006 * 109.49275 * 178.68346 * 11 10 8 41 41 H 1.08990 * 109.50243 * 58.58635 * 11 10 8 42 42 H 1.09003 * 109.58872 * 294.85351 * 12 11 10 43 43 H 1.09000 * 109.70321 * 174.49829 * 12 11 10 44 44 H 0.97001 * 120.00196 * 179.97438 * 17 16 14 45 45 H 1.09005 * 109.58357 * 293.81958 * 22 13 12 46 46 H 1.08996 * 109.58704 * 173.39766 * 22 13 12 47 47 H 1.09000 * 109.54401 * 299.83031 * 23 2 1 48 48 H 1.09006 * 109.52527 * 303.05874 * 24 23 2 49 49 H 1.09001 * 109.52481 * 63.24780 * 24 23 2 50 50 H 1.08995 * 109.48440 * 297.62791 * 25 24 23 51 51 H 1.09011 * 109.49084 * 177.59679 * 25 24 23 52 52 H 1.08999 * 109.48011 * 301.17025 * 27 26 25 53 53 H 1.09008 * 109.48824 * 181.14428 * 27 26 25 54 54 H 1.08990 * 109.52307 * 182.48486 * 28 27 26 55 55 H 1.09002 * 109.57303 * 62.32131 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1946 -0.9407 3.6508 8 6 1.6852 -0.2190 4.9000 9 1 0.5988 -0.1407 4.8574 10 6 2.0927 -1.0071 6.1471 11 6 1.5554 -0.3033 7.3953 12 6 2.1655 1.0988 7.4886 13 7 1.9020 1.8137 6.2324 14 6 1.2994 3.0433 6.2426 15 1 0.7108 3.3634 5.3955 16 6 1.4451 3.8785 7.3418 17 7 2.4123 3.6634 8.2082 18 14 0.2684 5.3078 7.5913 19 1 -0.8426 4.8846 8.4812 20 1 0.9948 6.4443 8.2125 21 1 -0.2824 5.7305 6.2786 22 6 2.2967 1.1840 4.9650 23 6 2.0400 -0.7213 -1.2492 24 6 3.5717 -0.7127 -1.2565 25 6 4.0718 -1.3664 -2.5473 26 8 3.5365 -0.6666 -3.6725 27 6 2.1093 -0.6818 -3.7438 28 6 1.5303 -0.0006 -2.5011 29 1 -0.3633 0.5140 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.1493 0.5390 2.5436 36 1 1.8309 -1.9682 3.6507 37 1 3.2847 -0.9412 3.6510 38 1 1.6791 -2.0140 6.0915 39 1 3.1799 -1.0636 6.2016 40 1 1.8260 -0.8775 8.2815 41 1 0.4704 -0.2243 7.3298 42 1 3.2413 1.0195 7.6451 43 1 1.7144 1.6413 8.3195 44 1 2.5143 4.2473 8.9761 45 1 3.3832 1.1117 4.9158 46 1 1.9300 1.7815 4.1304 47 1 1.6798 -1.7501 -1.2488 48 1 3.9304 0.3154 -1.2061 49 1 3.9432 -1.2716 -0.3976 50 1 3.7467 -2.4063 -2.5778 51 1 5.1607 -1.3248 -2.5779 52 1 1.7585 -1.7128 -3.7900 53 1 1.7840 -0.1469 -4.6362 54 1 0.4419 -0.0502 -2.5322 55 1 1.8469 1.0421 -2.4753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359587974.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:33:15 Heat of formation + Delta-G solvation = -107.114817 kcal Electronic energy + Delta-G solvation = -31308.015271 eV Core-core repulsion = 27343.552738 eV Total energy + Delta-G solvation = -3964.462533 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78167 -40.04553 -39.28978 -37.03867 -36.25446 -34.71718 -32.79872 -32.30090 -32.00183 -31.46150 -28.35116 -27.29446 -26.91820 -26.17562 -24.57779 -23.91235 -23.49149 -22.40307 -21.35956 -20.71365 -19.75147 -18.66758 -17.75895 -17.35327 -16.90863 -16.84153 -16.75824 -16.48572 -15.91369 -15.68050 -15.56791 -15.32361 -15.09643 -14.96204 -14.69748 -14.51931 -14.36267 -14.00077 -13.82810 -13.73669 -13.40815 -13.21814 -13.04265 -13.00779 -12.88289 -12.80749 -12.61167 -12.51876 -12.27184 -12.22129 -11.95529 -11.86146 -11.83006 -11.68304 -11.60162 -11.53654 -11.30087 -11.10815 -11.05468 -10.55318 -10.53211 -10.30276 -9.98995 -8.68386 -7.86847 -5.32673 1.47345 1.48908 1.57651 1.67925 2.24465 2.51215 3.00869 3.27926 3.52841 3.58490 3.66421 3.73581 3.98269 4.00700 4.04412 4.10063 4.13633 4.15613 4.23694 4.32621 4.39725 4.40600 4.56816 4.59988 4.63426 4.71111 4.74535 4.75521 4.79913 4.86096 4.87331 4.88845 4.90564 4.91941 5.00254 5.02021 5.08623 5.09469 5.13594 5.20626 5.23064 5.27358 5.32782 5.38177 5.42560 5.51576 5.54051 5.58064 5.66793 5.77549 6.30440 6.38850 6.58349 7.14815 7.27998 7.86155 8.38498 9.19545 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002557 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.741606 B =10949.392896 C =11899.558964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.069 4.069 3 C -0.146 4.146 4 C 0.518 3.482 5 O -0.575 6.575 6 N -0.718 5.718 7 C 0.138 3.862 8 C -0.099 4.099 9 H 0.077 0.923 10 C -0.097 4.097 11 C -0.130 4.130 12 C 0.172 3.828 13 N -0.609 5.609 14 C -0.260 4.260 15 H 0.072 0.928 16 C -0.053 4.053 17 N -0.937 5.937 18 Si 0.966 3.034 19 H -0.287 1.287 20 H -0.299 1.299 21 H -0.264 1.264 22 C 0.155 3.845 23 C -0.058 4.058 24 C -0.160 4.160 25 C 0.064 3.936 26 O -0.404 6.404 27 C 0.055 3.945 28 C -0.149 4.149 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.408 0.592 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.054 0.946 42 H -0.009 1.009 43 H 0.051 0.949 44 H 0.249 0.751 45 H 0.003 0.997 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.049 0.951 51 H 0.095 0.905 52 H 0.052 0.948 53 H 0.109 0.891 54 H 0.096 0.904 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 -9.962 -20.576 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.203 4.203 4 C 0.306 3.694 5 O -0.455 6.455 6 N -0.369 5.369 7 C 0.014 3.986 8 C -0.120 4.120 9 H 0.095 0.905 10 C -0.135 4.135 11 C -0.169 4.169 12 C 0.047 3.953 13 N -0.332 5.332 14 C -0.390 4.390 15 H 0.089 0.911 16 C -0.248 4.248 17 N -0.583 5.583 18 Si 0.794 3.206 19 H -0.214 1.214 20 H -0.226 1.226 21 H -0.188 1.188 22 C 0.029 3.971 23 C -0.077 4.077 24 C -0.197 4.197 25 C -0.013 4.013 26 O -0.323 6.323 27 C -0.022 4.022 28 C -0.186 4.186 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.245 0.755 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.009 0.991 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.021 0.979 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.068 0.932 51 H 0.113 0.887 52 H 0.071 0.929 53 H 0.127 0.873 54 H 0.114 0.886 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.188 -10.460 -20.645 23.520 hybrid contribution -0.339 1.090 1.203 1.658 sum -4.527 -9.370 -19.442 22.052 Atomic orbital electron populations 1.21940 0.90824 1.02869 1.04247 1.20773 0.98289 0.96565 0.91583 1.22012 1.01281 0.93082 1.03917 1.21070 0.79204 0.83929 0.85238 1.90599 1.39511 1.28234 1.87131 1.46078 1.53308 1.32151 1.05395 1.21226 0.98477 0.95820 0.83089 1.21709 1.00812 0.95737 0.93725 0.90504 1.21337 1.00381 0.98480 0.93330 1.21992 1.00130 0.96714 0.98029 1.20630 0.95054 0.90493 0.89155 1.44310 1.69916 1.17516 1.01444 1.19553 1.22897 0.92875 1.03664 0.91050 1.25813 0.98843 1.00435 0.99695 1.70205 1.31684 1.40919 1.15503 0.85274 0.78432 0.78659 0.78226 1.21414 1.22576 1.18806 1.20992 0.95150 0.92499 0.88442 1.20908 0.94915 0.98912 0.92996 1.22449 0.96430 1.01875 0.98994 1.22572 0.99054 0.94704 0.84928 1.87888 1.21814 1.76214 1.46422 1.22762 0.80071 1.00490 0.98848 1.22375 1.02164 1.00636 0.93416 0.91520 0.88992 0.92367 0.92947 0.89198 0.91799 0.75541 0.91179 0.92884 0.90227 0.92828 0.91320 0.92751 0.99070 0.93054 0.94231 0.97923 0.92525 0.91725 0.91636 0.90574 0.93244 0.88682 0.92928 0.87296 0.88557 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.02 71.98 0.58 -1.36 16 2 C -0.07 -1.24 0.43 -52.93 -0.02 -1.27 16 3 C -0.15 -2.46 7.67 71.98 0.55 -1.91 16 4 C 0.52 12.89 6.20 87.66 0.54 13.43 16 5 O -0.57 -18.05 13.70 -3.04 -0.04 -18.10 16 6 N -0.72 -17.31 5.12 -463.05 -2.37 -19.68 16 7 C 0.14 3.70 5.07 86.38 0.44 4.14 16 8 C -0.10 -3.01 2.38 -10.72 -0.03 -3.04 16 9 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 10 C -0.10 -2.94 5.17 30.62 0.16 -2.78 16 11 C -0.13 -4.65 6.08 30.67 0.19 -4.47 16 12 C 0.17 8.21 5.31 86.36 0.46 8.67 16 13 N -0.61 -29.56 2.99 -699.11 -2.09 -31.65 16 14 C -0.26 -13.79 9.58 84.03 0.81 -12.98 16 15 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 16 C -0.05 -2.89 4.90 84.86 0.42 -2.47 16 17 N -0.94 -55.22 11.22 21.65 0.24 -54.98 16 18 Si 0.97 43.86 29.59 68.60 2.03 45.89 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 22 C 0.15 6.02 5.60 86.36 0.48 6.50 16 23 C -0.06 -1.06 1.27 -10.67 -0.01 -1.07 16 24 C -0.16 -3.41 4.77 30.68 0.15 -3.27 16 25 C 0.06 1.25 6.84 72.01 0.49 1.74 16 26 O -0.40 -8.21 10.77 -148.98 -1.60 -9.82 16 27 C 0.05 0.78 6.84 72.01 0.49 1.27 16 28 C -0.15 -1.95 4.70 30.69 0.14 -1.81 16 29 H 0.07 0.89 7.56 -2.38 -0.02 0.87 16 30 H 0.09 0.88 6.51 -2.38 -0.02 0.86 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 1.03 6.36 -2.39 -0.02 1.01 16 33 H 0.09 1.17 6.37 -2.38 -0.02 1.16 16 34 H 0.06 1.08 7.56 -2.39 -0.02 1.07 16 35 H 0.41 8.84 6.53 -92.71 -0.61 8.24 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 42 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H 0.05 2.79 6.06 -2.39 -0.01 2.77 16 44 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 45 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 46 H 0.06 2.08 7.13 -2.39 -0.02 2.06 16 47 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 48 H 0.07 1.42 6.27 -2.38 -0.01 1.40 16 49 H 0.08 2.02 5.65 -2.39 -0.01 2.01 16 50 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 52 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 54 H 0.10 0.88 6.62 -2.39 -0.02 0.86 16 55 H 0.08 1.04 6.28 -2.39 -0.01 1.03 16 Total: -1.00 -67.14 402.74 2.26 -64.89 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.26 Total: 24.10 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.83 Total: -0.66 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -4.22 Total: -106.30 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -1.65 Total: -27.92 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.14 2.26 -64.89 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359587974.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.228 kcal (2) G-P(sol) polarization free energy of solvation -67.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds