Wall clock time and date at job start Sat Apr 11 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47021 * 2 1 4 4 C 1.52997 * 109.47164 * 174.99755 * 3 2 1 5 5 C 1.53006 * 109.46974 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47000 * 300.00410 * 5 4 3 7 7 C 1.53006 * 109.46626 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.46726 * 174.99859 * 7 6 5 9 9 C 1.34779 * 120.00066 * 179.97438 * 8 7 6 10 10 O 1.21351 * 119.99408 * 0.02562 * 9 8 7 11 11 C 1.49447 * 120.00401 * 179.97438 * 9 8 7 12 12 O 1.21350 * 119.99527 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99984 * 180.02562 * 11 9 8 14 14 C 1.46498 * 119.99649 * 180.02562 * 13 11 9 15 15 C 1.53006 * 109.47099 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.46947 * 300.00107 * 15 14 13 17 17 C 1.53000 * 109.46949 * 59.99690 * 15 14 13 18 18 C 1.50698 * 109.47286 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00165 * 0.02562 * 18 15 14 20 20 C 1.37873 * 120.00194 * 180.02562 * 18 15 14 21 21 N 1.31520 * 119.99562 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 120.00222 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47269 * 89.99840 * 22 20 18 24 24 H 1.48500 * 109.46905 * 209.99869 * 22 20 18 25 25 H 1.48502 * 109.47009 * 329.99482 * 22 20 18 26 26 C 1.52997 * 109.47592 * 59.99968 * 6 5 4 27 27 C 1.52996 * 109.46975 * 300.00042 * 26 6 5 28 28 H 1.09002 * 109.46905 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47847 * 300.00115 * 1 2 3 30 30 H 1.09004 * 109.47446 * 60.00542 * 1 2 3 31 31 H 1.08992 * 109.47518 * 239.99913 * 2 1 3 32 32 H 1.09004 * 109.46986 * 119.99190 * 2 1 3 33 33 H 1.09000 * 109.47050 * 54.99751 * 3 2 1 34 34 H 1.09000 * 109.47140 * 60.00051 * 4 3 2 35 35 H 1.09001 * 109.46922 * 299.99751 * 4 3 2 36 36 H 1.08993 * 109.46765 * 179.97438 * 5 4 3 37 37 H 1.09000 * 109.46866 * 60.00225 * 5 4 3 38 38 H 1.09000 * 109.47160 * 299.99635 * 6 5 4 39 39 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 40 40 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 41 41 H 0.96998 * 120.00310 * 359.97438 * 8 7 6 42 42 H 0.96998 * 120.00041 * 0.02562 * 13 11 9 43 43 H 1.09007 * 109.47099 * 299.99801 * 14 13 11 44 44 H 1.09006 * 109.47554 * 59.99901 * 14 13 11 45 45 H 1.08997 * 109.47474 * 59.99676 * 16 15 14 46 46 H 1.09002 * 109.47139 * 179.97438 * 16 15 14 47 47 H 1.09000 * 109.47145 * 299.99875 * 16 15 14 48 48 H 1.09007 * 109.47132 * 60.00274 * 17 15 14 49 49 H 1.09002 * 109.47044 * 180.02562 * 17 15 14 50 50 H 1.08996 * 109.47552 * 300.00396 * 17 15 14 51 51 H 0.97005 * 119.99631 * 179.97438 * 21 20 18 52 52 H 1.09000 * 109.47140 * 59.99654 * 26 6 5 53 53 H 1.09001 * 109.47375 * 179.97438 * 26 6 5 54 54 H 1.09004 * 109.47368 * 299.99783 * 27 26 6 55 55 H 1.08996 * 109.47261 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5648 1.4444 0.1258 5 6 4.0748 2.8870 0.1251 6 6 3.6699 3.5704 -1.1825 7 6 4.1805 5.0128 -1.1833 8 7 3.8979 5.6300 -2.4815 9 6 4.2601 6.9073 -2.7136 10 8 4.8208 7.5458 -1.8473 11 6 3.9723 7.5368 -4.0381 12 8 3.4121 6.8981 -4.9045 13 7 4.3351 8.8140 -4.2702 14 6 4.0524 9.4312 -5.5684 15 6 4.5636 10.8734 -5.5696 16 6 3.8604 11.6645 -4.4648 17 6 6.0730 10.8796 -5.3196 18 6 4.2734 11.5081 -6.9052 19 1 3.7740 10.9400 -7.6760 20 6 4.6455 12.8142 -7.1432 21 7 5.2532 13.5062 -6.2043 22 14 4.2852 13.6013 -8.7985 23 1 2.9502 14.2502 -8.7579 24 1 5.3224 14.6209 -9.0979 25 1 4.2967 12.5582 -9.8555 26 6 2.1452 3.5686 -1.3083 27 6 1.6352 2.1261 -1.3076 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6053 1.9816 0.8418 34 1 3.9994 0.9054 -0.7160 35 1 3.8531 0.9572 1.0572 36 1 5.1610 2.8883 0.2152 37 1 3.6401 3.4264 0.9667 38 1 4.1046 3.0311 -2.0241 39 1 3.6792 5.5761 -0.3963 40 1 5.2559 5.0177 -1.0051 41 1 3.4500 5.1195 -3.1741 42 1 4.7833 9.3244 -3.5778 43 1 4.5538 8.8678 -6.3555 44 1 2.9771 9.4263 -5.7468 45 1 4.0707 11.2052 -3.4989 46 1 4.2249 12.6917 -4.4653 47 1 2.7851 11.6600 -4.6428 48 1 6.5740 10.3160 -6.1067 49 1 6.4371 11.9070 -5.3200 50 1 6.2833 10.4203 -4.3538 51 1 5.5154 14.4250 -6.3718 52 1 1.7105 4.1079 -0.4667 53 1 1.8568 4.0559 -2.2397 54 1 2.0698 1.5866 -2.1492 55 1 0.5489 2.1247 -1.3977 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422180895.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:33:17 Heat of formation + Delta-G solvation = -133.816438 kcal Electronic energy + Delta-G solvation = -29603.431079 eV Core-core repulsion = 25637.810678 eV Total energy + Delta-G solvation = -3965.620402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74505 -40.27422 -39.51304 -38.19495 -36.69763 -35.12342 -34.27739 -32.74296 -31.65174 -30.80158 -28.17213 -27.59002 -27.33760 -26.68746 -24.56575 -23.97241 -22.86873 -21.58872 -21.21684 -20.73366 -20.61046 -19.60183 -18.02786 -17.67424 -17.13933 -16.79113 -16.52597 -16.36834 -16.12838 -15.69791 -15.52621 -15.10535 -14.96617 -14.78312 -14.74938 -14.54036 -14.27423 -14.05757 -13.95081 -13.58885 -13.31058 -13.21072 -13.13247 -12.93527 -12.78170 -12.70145 -12.58690 -12.41167 -12.27850 -12.16052 -12.11872 -11.93558 -11.90784 -11.58429 -11.50968 -11.30515 -11.28378 -10.96057 -10.78377 -10.75636 -10.61312 -10.40947 -10.30321 -10.12075 -8.01193 -6.17647 0.34993 1.36788 1.44571 1.47770 1.55730 2.14969 2.45737 2.73228 3.22662 3.47067 3.59863 3.74734 3.81076 4.03243 4.17347 4.23535 4.34210 4.44277 4.46910 4.52323 4.58107 4.62764 4.65516 4.66605 4.67575 4.70731 4.86534 4.88333 4.92195 5.00271 5.03690 5.05727 5.08063 5.16253 5.16898 5.20796 5.21421 5.22928 5.29573 5.30829 5.34537 5.39649 5.46561 5.47950 5.58158 5.64519 5.67693 5.67830 5.95159 6.10889 6.18754 6.38976 6.41475 6.74063 6.86585 6.96636 7.50241 8.98067 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029561 B = 0.001728 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.981106 B =16204.072797 C =16748.412257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.087 4.087 4 C -0.110 4.110 5 C -0.109 4.109 6 C -0.090 4.090 7 C 0.120 3.880 8 N -0.686 5.686 9 C 0.512 3.488 10 O -0.543 6.543 11 C 0.497 3.503 12 O -0.551 6.551 13 N -0.682 5.682 14 C 0.143 3.857 15 C 0.048 3.952 16 C -0.123 4.123 17 C -0.122 4.122 18 C -0.525 4.525 19 H 0.051 0.949 20 C 0.026 3.974 21 N -0.901 5.901 22 Si 0.949 3.051 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.118 4.118 27 C -0.112 4.112 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.418 0.582 42 H 0.413 0.587 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.029 0.971 46 H 0.063 0.937 47 H 0.023 0.977 48 H 0.023 0.977 49 H 0.063 0.937 50 H 0.029 0.971 51 H 0.260 0.740 52 H 0.062 0.938 53 H 0.058 0.942 54 H 0.063 0.937 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.975 -25.912 14.880 30.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.105 4.105 4 C -0.148 4.148 5 C -0.147 4.147 6 C -0.108 4.108 7 C -0.003 4.003 8 N -0.339 5.339 9 C 0.292 3.708 10 O -0.421 6.421 11 C 0.277 3.723 12 O -0.431 6.431 13 N -0.334 5.334 14 C 0.021 3.979 15 C 0.047 3.953 16 C -0.180 4.180 17 C -0.180 4.180 18 C -0.564 4.564 19 H 0.070 0.930 20 C -0.174 4.174 21 N -0.539 5.539 22 Si 0.775 3.225 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.155 4.155 27 C -0.150 4.150 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.256 0.744 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.082 0.918 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.082 0.918 50 H 0.048 0.952 51 H 0.069 0.931 52 H 0.081 0.919 53 H 0.076 0.924 54 H 0.081 0.919 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.891 -25.724 14.918 30.136 hybrid contribution -0.165 0.892 -1.049 1.387 sum -5.057 -24.832 13.869 28.889 Atomic orbital electron populations 1.21832 0.96002 1.01633 1.01812 1.21554 0.95841 0.96160 1.02021 1.21193 0.95657 0.95892 0.97763 1.21552 0.94926 0.95965 1.02317 1.21482 1.01276 0.95970 0.95949 1.21372 0.96335 0.92823 1.00298 1.21721 1.01370 0.93924 0.83256 1.45783 1.58617 1.11390 1.18093 1.20003 0.79892 0.83556 0.87377 1.90752 1.41925 1.63077 1.46345 1.20372 0.80295 0.83136 0.88458 1.90710 1.42674 1.62829 1.46851 1.46079 1.57444 1.11982 1.17860 1.21547 0.99524 0.94629 0.82234 1.18412 0.93000 0.88783 0.95095 1.21693 0.98027 1.02524 0.95803 1.21692 0.97513 1.01867 0.96957 1.21226 1.38647 0.97648 0.98836 0.93035 1.25500 0.94808 0.97575 0.99497 1.69931 1.40464 1.09889 1.33640 0.85705 0.77655 0.78184 0.80925 1.20539 1.21095 1.19787 1.21629 0.94465 0.97530 1.01920 1.21601 1.00780 0.94816 0.97759 0.92675 0.92911 0.92672 0.92076 0.91783 0.91523 0.91793 0.91212 0.91028 0.91485 0.89808 0.91144 0.90859 0.74416 0.74924 0.92728 0.92716 0.95212 0.91798 0.95777 0.95756 0.91803 0.95217 0.93061 0.91895 0.92368 0.91875 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.67 71.98 0.70 -0.73 16 2 C -0.12 -1.05 5.40 30.60 0.17 -0.88 16 3 C -0.09 -0.82 2.19 -10.79 -0.02 -0.85 16 4 C -0.11 -0.97 5.20 30.60 0.16 -0.81 16 5 C -0.11 -1.06 5.20 30.60 0.16 -0.90 16 6 C -0.09 -1.06 2.22 -10.79 -0.02 -1.09 16 7 C 0.12 2.02 5.07 86.38 0.44 2.46 16 8 N -0.69 -14.93 5.28 -464.41 -2.45 -17.38 16 9 C 0.51 15.13 7.89 87.27 0.69 15.82 16 10 O -0.54 -18.32 16.48 -3.25 -0.05 -18.37 16 11 C 0.50 17.07 7.89 87.27 0.69 17.76 16 12 O -0.55 -20.63 16.48 -3.25 -0.05 -20.69 16 13 N -0.68 -25.01 4.95 -464.39 -2.30 -27.31 16 14 C 0.14 5.99 4.50 86.38 0.39 6.38 16 15 C 0.05 2.22 0.50 -52.93 -0.03 2.20 16 16 C -0.12 -5.61 8.08 71.98 0.58 -5.02 16 17 C -0.12 -5.59 8.08 71.98 0.58 -5.01 16 18 C -0.53 -27.35 8.01 25.60 0.21 -27.15 16 19 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 20 C 0.03 1.36 5.15 84.65 0.44 1.80 16 21 N -0.90 -48.33 9.35 21.45 0.20 -48.13 16 22 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 24 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C -0.12 -1.46 5.08 30.59 0.16 -1.30 16 27 C -0.11 -1.21 4.96 30.59 0.15 -1.05 16 28 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.53 6.56 -2.38 -0.02 0.51 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.42 8.22 7.13 -92.71 -0.66 7.56 16 42 H 0.41 14.83 5.64 -92.71 -0.52 14.31 16 43 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 44 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 45 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 46 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 47 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 49 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 50 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 51 H 0.26 13.45 8.31 -92.70 -0.77 12.68 16 52 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.06 0.81 7.18 -2.39 -0.02 0.79 16 54 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 55 H 0.06 0.71 6.56 -2.39 -0.02 0.70 16 Total: -1.00 -58.53 420.03 2.47 -56.05 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.32 Total: 29.89 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 5.42 Total: 1.61 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -4.55 Total: -92.82 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.11 Total: -39.06 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -58.53 2.47 -56.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422180895.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.762 kcal (2) G-P(sol) polarization free energy of solvation -58.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds