Wall clock time and date at job start Sat Apr 11 2020 05:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47609 * 2 1 4 4 C 1.53004 * 109.47355 * 239.99932 * 2 1 3 5 5 C 1.53003 * 109.47285 * 120.00187 * 2 1 3 6 6 C 1.53004 * 109.47069 * 59.99927 * 5 2 1 7 7 C 1.52994 * 109.47284 * 180.02562 * 6 5 2 8 8 O 1.42904 * 112.90971 * 53.74248 * 7 6 5 9 9 C 1.53782 * 113.61630 * 184.99719 * 7 6 5 10 10 C 1.53783 * 87.08075 * 89.11196 * 9 7 6 11 11 C 1.50696 * 113.61345 * 139.98115 * 10 9 7 12 12 O 1.21282 * 120.00323 * 1.52867 * 11 10 9 13 13 N 1.34783 * 120.00050 * 181.53032 * 11 10 9 14 14 C 1.46967 * 120.59522 * 180.02562 * 13 11 10 15 15 C 1.53374 * 108.63231 * 235.25231 * 14 13 11 16 16 N 1.46972 * 108.63217 * 310.57203 * 15 14 13 17 17 C 1.36935 * 120.59045 * 235.20705 * 16 15 14 18 18 H 1.08002 * 119.99725 * 151.84492 * 17 16 15 19 19 C 1.38804 * 120.00405 * 331.57419 * 17 16 15 20 20 N 1.31622 * 119.99787 * 342.82520 * 19 17 16 21 21 Si 1.86800 * 120.00346 * 162.82771 * 19 17 16 22 22 H 1.48493 * 109.47374 * 89.99790 * 21 19 17 23 23 H 1.48496 * 109.47349 * 210.00137 * 21 19 17 24 24 H 1.48504 * 109.47003 * 329.99893 * 21 19 17 25 25 C 1.46962 * 118.81330 * 55.48066 * 16 15 14 26 26 C 1.46958 * 120.59366 * 0.02562 * 13 11 10 27 27 C 1.53784 * 87.17226 * 25.39108 * 10 9 7 28 28 H 1.09003 * 109.46959 * 299.99974 * 1 2 3 29 29 H 1.08995 * 109.47007 * 59.99673 * 1 2 3 30 30 H 1.08991 * 109.47313 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47375 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47203 * 300.00207 * 3 2 1 33 33 H 1.09003 * 109.46938 * 60.00013 * 3 2 1 34 34 H 1.08998 * 109.47156 * 300.00664 * 4 2 1 35 35 H 1.09008 * 109.46659 * 59.99892 * 4 2 1 36 36 H 1.08997 * 109.47679 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.46835 * 300.00266 * 5 2 1 38 38 H 1.09001 * 109.47390 * 179.97438 * 5 2 1 39 39 H 1.08993 * 109.47249 * 59.99567 * 6 5 2 40 40 H 1.09007 * 109.46897 * 300.00327 * 6 5 2 41 41 H 0.96697 * 113.99794 * 311.25468 * 8 7 6 42 42 H 1.09005 * 113.61148 * 334.56583 * 9 7 6 43 43 H 1.08997 * 113.69080 * 203.67384 * 9 7 6 44 44 H 1.09001 * 113.61932 * 270.80409 * 10 9 7 45 45 H 1.08996 * 109.60899 * 115.50126 * 14 13 11 46 46 H 1.09001 * 109.60456 * 354.99104 * 14 13 11 47 47 H 1.09002 * 109.60640 * 190.83592 * 15 14 13 48 48 H 1.08999 * 109.75615 * 70.39807 * 15 14 13 49 49 H 0.96999 * 119.99847 * 179.97438 * 20 19 17 50 50 H 1.08998 * 109.60973 * 64.26416 * 25 16 15 51 51 H 1.08995 * 109.61395 * 184.77560 * 25 16 15 52 52 H 1.09002 * 109.60988 * 244.49705 * 26 13 11 53 53 H 1.09006 * 109.61277 * 4.83592 * 26 13 11 54 54 H 1.09001 * 113.61192 * 89.15764 * 27 10 9 55 55 H 1.08997 * 113.61546 * 220.05923 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2492 7 6 2.0395 -2.8849 2.4987 8 8 1.7248 -2.1919 3.7081 9 6 1.6833 -4.3805 2.5351 10 6 3.0028 -4.6325 1.7865 11 6 3.7461 -5.8521 2.2671 12 8 3.2748 -6.5423 3.1460 13 7 4.9348 -6.1758 1.7204 14 6 5.6706 -7.3626 2.1788 15 6 7.0777 -6.9306 2.6096 16 7 7.6615 -6.1028 1.5446 17 6 8.8695 -6.4313 0.9898 18 1 9.0902 -6.1495 -0.0292 19 6 9.8127 -7.1213 1.7388 20 7 9.7062 -7.1674 3.0499 21 14 11.2330 -7.9844 0.8862 22 1 12.3793 -7.0485 0.7637 23 1 11.6434 -9.1681 1.6835 24 1 10.8054 -8.4230 -0.4667 25 6 6.9283 -4.9130 1.0901 26 6 5.5183 -5.3484 0.6552 27 6 3.5135 -3.3182 2.4003 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2495 37 1 1.6766 -0.2075 2.1392 38 1 3.1300 -0.7217 1.2490 39 1 1.8932 -2.6776 0.3592 40 1 0.4399 -2.1638 1.2492 41 1 1.9465 -1.2509 3.6913 42 1 0.7964 -4.6324 1.9535 43 1 1.6642 -4.8018 3.5402 44 1 2.9030 -4.5978 0.7017 45 1 5.7424 -8.0850 1.3658 46 1 5.1504 -7.8111 3.0251 47 1 7.6983 -7.8124 2.7691 48 1 7.0195 -6.3525 3.5318 49 1 10.3651 -7.6500 3.5733 50 1 6.8568 -4.1936 1.9059 51 1 7.4501 -4.4620 0.2461 52 1 5.5793 -5.9277 -0.2661 53 1 4.8960 -4.4682 0.4933 54 1 3.9963 -3.4473 3.3690 55 1 4.1021 -2.7137 1.7102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449947887.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:33:33 Heat of formation + Delta-G solvation = -77.246703 kcal Electronic energy + Delta-G solvation = -31346.044435 eV Core-core repulsion = 27382.877081 eV Total energy + Delta-G solvation = -3963.167354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88318 -40.19309 -38.57756 -38.07500 -35.88432 -35.59664 -33.06135 -32.17003 -31.48556 -28.89127 -28.07206 -28.03083 -27.14600 -26.61217 -25.35576 -24.59731 -23.79378 -22.13834 -20.57811 -19.60082 -19.35995 -18.86807 -18.17294 -17.63311 -16.92345 -16.73571 -16.41468 -16.11952 -15.82285 -15.54015 -15.45439 -15.21539 -15.05532 -14.93052 -14.82940 -14.59658 -14.16084 -13.87516 -13.58282 -13.42536 -13.28691 -13.19709 -13.14719 -12.79224 -12.63922 -12.58776 -12.48613 -12.43644 -12.29774 -12.26910 -12.11523 -11.99792 -11.85828 -11.81457 -11.73574 -11.63794 -11.36329 -11.25501 -11.03845 -10.81938 -10.61671 -10.48751 -9.82315 -8.67024 -7.89266 -5.38220 1.46963 1.49646 1.58695 1.60630 2.04316 2.50620 3.22167 3.26046 3.36597 3.48779 3.59029 3.63696 3.75418 3.84971 4.00834 4.07128 4.08436 4.23833 4.30436 4.35236 4.40143 4.45304 4.52887 4.61284 4.65304 4.71897 4.75922 4.78306 4.79032 4.86720 4.89742 4.90519 4.91790 4.99555 5.03230 5.05473 5.08647 5.17659 5.20145 5.23944 5.28981 5.29581 5.34261 5.34420 5.44696 5.53008 5.60312 5.64783 5.65638 5.67847 6.34352 6.53367 6.88490 7.08104 7.19146 7.78245 8.31840 9.16131 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015473 B = 0.002674 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.192030 B =10468.700503 C =11551.701438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 C -0.143 4.143 4 C -0.147 4.147 5 C -0.112 4.112 6 C -0.121 4.121 7 C 0.121 3.879 8 O -0.569 6.569 9 C -0.107 4.107 10 C -0.123 4.123 11 C 0.513 3.487 12 O -0.596 6.596 13 N -0.599 5.599 14 C 0.100 3.900 15 C 0.172 3.828 16 N -0.608 5.608 17 C -0.261 4.261 18 H 0.078 0.922 19 C -0.053 4.053 20 N -0.938 5.938 21 Si 0.969 3.031 22 H -0.284 1.284 23 H -0.297 1.297 24 H -0.266 1.266 25 C 0.126 3.874 26 C 0.100 3.900 27 C -0.141 4.141 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.387 0.613 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.149 0.851 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.068 0.932 48 H -0.012 1.012 49 H 0.250 0.750 50 H 0.015 0.985 51 H 0.082 0.918 52 H 0.076 0.924 53 H 0.118 0.882 54 H 0.060 0.940 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.933 16.344 -10.133 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 C -0.200 4.200 4 C -0.205 4.205 5 C -0.150 4.150 6 C -0.158 4.158 7 C 0.080 3.920 8 O -0.378 6.378 9 C -0.145 4.145 10 C -0.144 4.144 11 C 0.303 3.697 12 O -0.478 6.478 13 N -0.331 5.331 14 C -0.024 4.024 15 C 0.045 3.955 16 N -0.332 5.332 17 C -0.391 4.391 18 H 0.095 0.905 19 C -0.248 4.248 20 N -0.584 5.584 21 Si 0.797 3.203 22 H -0.211 1.211 23 H -0.224 1.224 24 H -0.191 1.191 25 C 0.000 4.000 26 C -0.023 4.023 27 C -0.180 4.180 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.237 0.763 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.167 0.833 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.006 0.994 49 H 0.059 0.941 50 H 0.033 0.967 51 H 0.100 0.900 52 H 0.094 0.906 53 H 0.135 0.865 54 H 0.079 0.921 55 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.248 15.339 -9.425 26.356 hybrid contribution 1.494 -0.358 0.338 1.573 sum -17.754 14.982 -9.087 24.945 Atomic orbital electron populations 1.21943 0.94571 1.02033 1.01633 1.20484 0.95644 0.95317 0.95073 1.21881 1.00997 0.95368 1.01776 1.21973 1.01178 1.00621 0.96686 1.21644 1.01078 0.94245 0.97987 1.22047 1.02037 0.96038 0.95721 1.22596 0.92613 0.91030 0.85712 1.86561 1.86822 1.27235 1.37137 1.22950 0.96524 0.94211 1.00801 1.22585 0.97112 0.91692 1.03009 1.21165 0.80739 0.86578 0.81177 1.90624 1.68804 1.54908 1.33448 1.48145 1.19451 1.27240 1.38219 1.22083 0.93215 0.87633 0.99479 1.20841 0.90481 0.95444 0.88756 1.44261 1.20128 1.25861 1.42929 1.19572 0.91465 1.32922 0.95170 0.90475 1.25881 1.00235 1.03191 0.95485 1.70192 1.37600 1.45314 1.05333 0.85253 0.79232 0.77697 0.78102 1.21092 1.22370 1.19086 1.21578 0.91943 0.88487 0.97954 1.22494 0.95186 0.95550 0.89119 1.23626 0.98608 0.94579 1.01142 0.92806 0.92766 0.92189 0.92732 0.92640 0.92634 0.91860 0.92832 0.92535 0.91406 0.91321 0.88915 0.90043 0.76277 0.88707 0.91579 0.83330 0.91509 0.91238 0.91363 0.99381 0.94108 0.96746 0.89997 0.90564 0.86453 0.92124 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.12 71.98 0.58 -0.75 16 2 C -0.07 -0.60 0.80 -52.18 -0.04 -0.65 16 3 C -0.14 -1.36 8.47 71.98 0.61 -0.75 16 4 C -0.15 -1.37 8.12 71.98 0.58 -0.79 16 5 C -0.11 -1.09 3.84 30.60 0.12 -0.97 16 6 C -0.12 -1.38 4.06 30.59 0.12 -1.26 16 7 C 0.12 2.20 1.52 -10.21 -0.02 2.19 16 8 O -0.57 -11.89 13.49 -148.98 -2.01 -13.90 16 9 C -0.11 -2.50 6.82 31.12 0.21 -2.29 16 10 C -0.12 -2.83 2.36 -11.01 -0.03 -2.85 16 11 C 0.51 17.64 7.22 87.65 0.63 18.27 16 12 O -0.60 -25.64 15.31 -3.04 -0.05 -25.69 16 13 N -0.60 -21.12 2.95 -817.07 -2.41 -23.53 16 14 C 0.10 4.18 6.59 86.42 0.57 4.75 16 15 C 0.17 8.55 5.51 86.41 0.48 9.03 16 16 N -0.61 -29.53 2.96 -697.26 -2.06 -31.60 16 17 C -0.26 -13.75 9.57 84.03 0.80 -12.94 16 18 H 0.08 3.83 7.89 -2.91 -0.02 3.81 16 19 C -0.05 -2.88 4.91 84.86 0.42 -2.47 16 20 N -0.94 -55.57 11.20 21.65 0.24 -55.32 16 21 Si 0.97 43.84 29.59 68.60 2.03 45.87 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 C 0.13 4.70 6.70 86.58 0.58 5.28 16 26 C 0.10 2.87 6.49 86.58 0.56 3.43 16 27 C -0.14 -3.00 6.49 31.18 0.20 -2.80 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.55 6.43 -2.39 -0.02 0.53 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.54 6.43 -2.39 -0.02 0.52 16 35 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.07 0.61 6.72 -2.39 -0.02 0.59 16 38 H 0.07 0.70 7.59 -2.39 -0.02 0.68 16 39 H 0.09 0.87 5.60 -2.39 -0.01 0.86 16 40 H 0.08 0.92 6.43 -2.38 -0.02 0.90 16 41 H 0.39 5.13 7.13 -74.06 -0.53 4.60 16 42 H 0.09 1.80 8.10 -2.38 -0.02 1.78 16 43 H 0.07 2.07 7.45 -2.39 -0.02 2.05 16 44 H 0.15 2.32 6.99 -2.39 -0.02 2.30 16 45 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.07 3.01 6.99 -2.39 -0.02 3.00 16 47 H 0.07 3.81 6.00 -2.39 -0.01 3.79 16 48 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 49 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 50 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.08 2.77 7.93 -2.39 -0.02 2.75 16 52 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 53 H 0.12 2.32 5.37 -2.38 -0.01 2.31 16 54 H 0.06 1.72 8.09 -2.39 -0.02 1.70 16 55 H 0.10 1.66 7.37 -2.39 -0.02 1.64 16 Total: -1.00 -72.29 410.81 2.48 -69.81 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.34 Total: 19.90 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.39 Total: 14.45 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -4.23 Total: -110.45 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -2.06 Total: -39.59 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -72.29 2.48 -69.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449947887.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.434 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds