Wall clock time and date at job start Sat Apr 11 2020 05:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48501 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46665 * 299.99449 * 3 2 1 6 6 H 1.48493 * 109.47127 * 59.99375 * 3 2 1 7 7 C 1.38816 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99837 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00367 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00252 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46957 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46991 * 175.06945 * 11 10 9 13 13 H 1.09000 * 109.58520 * 59.69374 * 12 11 10 14 14 C 1.53190 * 109.58689 * 299.26677 * 12 11 10 15 15 C 1.53046 * 109.31444 * 185.57609 * 14 12 11 16 16 C 1.53039 * 109.53485 * 61.36356 * 15 14 12 17 17 C 1.53193 * 109.31405 * 298.63404 * 16 15 14 18 18 N 1.46925 * 109.58853 * 179.97438 * 12 11 10 19 19 C 1.34774 * 120.62908 * 353.42090 * 18 12 11 20 20 O 1.21288 * 120.00220 * 5.43478 * 19 18 12 21 21 C 1.50699 * 119.99956 * 185.43318 * 19 18 12 22 22 C 1.53004 * 109.47014 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.46903 * 180.02562 * 22 21 19 24 24 H 1.08994 * 109.48238 * 55.02447 * 23 22 21 25 25 C 1.53091 * 109.48101 * 175.06111 * 23 22 21 26 26 C 1.53175 * 109.16637 * 177.59430 * 25 23 22 27 27 C 1.53183 * 109.03538 * 303.01590 * 26 25 23 28 28 C 1.53094 * 109.16048 * 56.97879 * 27 26 25 29 29 O 1.42899 * 109.41907 * 302.39281 * 28 27 26 30 30 H 0.97003 * 119.99827 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99618 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.47539 * 59.99922 * 10 9 7 33 33 H 1.09003 * 109.46813 * 299.99838 * 10 9 7 34 34 H 1.08994 * 109.47095 * 295.06924 * 11 10 9 35 35 H 1.09000 * 109.46880 * 55.07375 * 11 10 9 36 36 H 1.08997 * 109.49868 * 305.52962 * 14 12 11 37 37 H 1.09004 * 109.49740 * 65.62499 * 14 12 11 38 38 H 1.09003 * 109.45851 * 301.34353 * 15 14 12 39 39 H 1.08994 * 109.46109 * 181.38627 * 15 14 12 40 40 H 1.08996 * 109.49594 * 178.68534 * 16 15 14 41 41 H 1.09000 * 109.52177 * 58.60578 * 16 15 14 42 42 H 1.08993 * 109.58798 * 294.84822 * 17 16 15 43 43 H 1.09004 * 109.58674 * 174.42147 * 17 16 15 44 44 H 1.08995 * 109.47484 * 299.99608 * 21 19 18 45 45 H 1.09003 * 109.46874 * 59.99976 * 21 19 18 46 46 H 1.08995 * 109.46927 * 300.00258 * 22 21 19 47 47 H 1.09003 * 109.47068 * 60.00403 * 22 21 19 48 48 H 1.09006 * 109.52244 * 297.49877 * 25 23 22 49 49 H 1.09007 * 109.52316 * 57.68519 * 25 23 22 50 50 H 1.08998 * 109.54667 * 183.15648 * 26 25 23 51 51 H 1.09002 * 109.54812 * 62.88209 * 26 25 23 52 52 H 1.09006 * 109.52335 * 297.08126 * 27 26 25 53 53 H 1.08993 * 109.57850 * 176.91687 * 27 26 25 54 54 H 1.09000 * 109.48095 * 182.40977 * 28 27 26 55 55 H 1.08998 * 109.48906 * 62.38455 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2127 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 6 1.8246 -6.1414 -0.1207 13 1 2.5122 -6.2464 0.7185 14 6 2.6087 -6.1622 -1.4366 15 6 3.2544 -7.5377 -1.6194 16 6 2.1644 -8.6095 -1.6896 17 6 1.3753 -8.6165 -0.3765 18 7 0.8721 -7.2601 -0.1200 19 6 -0.4383 -7.0460 0.1111 20 8 -0.8572 -5.9133 0.2231 21 6 -1.3830 -8.2140 0.2302 22 6 -2.8001 -7.6993 0.4910 23 6 -3.7591 -8.8852 0.6126 24 1 -3.3970 -9.5682 1.3810 25 6 -5.1521 -8.3782 0.9950 26 6 -6.1197 -9.5640 1.0560 27 6 -6.1140 -10.2835 -0.2964 28 6 -4.6839 -10.7169 -0.6290 29 8 -3.8303 -9.5709 -0.6393 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6840 -3.7142 0.8921 33 1 2.6853 -3.7149 -0.8879 34 1 0.4963 -4.8122 0.9326 35 1 0.3807 -4.7140 -0.8409 36 1 1.9308 -5.9653 -2.2672 37 1 3.3843 -5.3968 -1.4101 38 1 3.9133 -7.7444 -0.7760 39 1 3.8332 -7.5473 -2.5429 40 1 2.6237 -9.5860 -1.8431 41 1 1.4906 -8.3901 -2.5178 42 1 2.0278 -8.9247 0.4403 43 1 0.5366 -9.3080 -0.4578 44 1 -1.3694 -8.7883 -0.6960 45 1 -1.0703 -8.8513 1.0575 46 1 -2.8133 -7.1252 1.4174 47 1 -3.1130 -7.0618 -0.3361 48 1 -5.1082 -7.8934 1.9704 49 1 -5.4977 -7.6640 0.2475 50 1 -7.1252 -9.2035 1.2728 51 1 -5.8019 -10.2543 1.8375 52 1 -6.4790 -9.6078 -1.0700 53 1 -6.7582 -11.1612 -0.2458 54 1 -4.6668 -11.1916 -1.6101 55 1 -4.3340 -11.4240 0.1230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753786487.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:30:57 Heat of formation + Delta-G solvation = -107.061627 kcal Electronic energy + Delta-G solvation = -30517.011504 eV Core-core repulsion = 26552.551278 eV Total energy + Delta-G solvation = -3964.460226 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.60988 -40.33067 -38.49352 -36.99803 -35.21499 -34.52606 -34.29860 -33.78087 -32.43271 -30.89078 -29.27663 -27.22411 -26.05010 -25.32914 -24.83705 -23.92939 -22.70055 -22.04147 -21.57058 -21.15904 -19.76612 -19.20803 -17.73784 -17.45930 -17.13886 -16.74071 -16.60990 -16.47285 -15.79139 -15.56347 -15.46612 -15.38274 -15.21697 -15.04655 -14.84465 -14.69676 -14.49849 -14.17533 -14.03740 -13.61359 -13.58109 -13.39367 -13.06128 -12.90120 -12.84073 -12.73504 -12.63456 -12.33484 -12.12248 -12.09743 -12.07820 -11.93332 -11.86269 -11.81036 -11.75358 -11.55503 -11.50627 -11.35646 -11.15261 -10.94626 -10.33020 -9.97246 -9.46521 -9.02567 -7.96209 -5.27183 1.43416 1.46761 1.56941 1.72989 2.04077 2.54271 2.86973 3.35882 3.46227 3.72531 3.79061 3.86352 3.93100 3.96108 4.00413 4.06791 4.12341 4.14665 4.16113 4.28226 4.31119 4.36105 4.44383 4.49329 4.49810 4.58757 4.62704 4.67279 4.72970 4.75269 4.78715 4.83238 4.87521 4.92986 4.94243 5.00677 5.01293 5.09922 5.12423 5.15326 5.18253 5.20895 5.24845 5.30315 5.39561 5.41492 5.42065 5.49218 5.52951 5.75586 6.24867 6.36872 6.54073 7.28913 7.33135 8.06144 8.30779 9.28283 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.002552 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.709518 B =10971.075186 C =13281.739443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.084 4.084 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.749 5.749 10 C 0.145 3.855 11 C -0.087 4.087 12 C 0.156 3.844 13 H 0.082 0.918 14 C -0.131 4.131 15 C -0.115 4.115 16 C -0.132 4.132 17 C 0.102 3.898 18 N -0.611 5.611 19 C 0.495 3.505 20 O -0.574 6.574 21 C -0.122 4.122 22 C -0.096 4.096 23 C 0.099 3.901 24 H 0.079 0.921 25 C -0.156 4.156 26 C -0.120 4.120 27 C -0.157 4.157 28 C 0.055 3.945 29 O -0.399 6.399 30 H 0.251 0.749 31 H 0.369 0.631 32 H 0.017 0.983 33 H 0.026 0.974 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.073 0.927 47 H 0.047 0.953 48 H 0.077 0.923 49 H 0.053 0.947 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.057 0.943 53 H 0.090 0.910 54 H 0.102 0.898 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 -33.326 0.266 33.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.276 4.276 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.391 5.391 10 C 0.018 3.982 11 C -0.125 4.125 12 C 0.053 3.947 13 H 0.100 0.900 14 C -0.169 4.169 15 C -0.152 4.152 16 C -0.170 4.170 17 C -0.019 4.019 18 N -0.344 5.344 19 C 0.285 3.715 20 O -0.454 6.454 21 C -0.161 4.161 22 C -0.134 4.134 23 C 0.041 3.959 24 H 0.097 0.903 25 C -0.194 4.194 26 C -0.158 4.158 27 C -0.195 4.195 28 C -0.021 4.021 29 O -0.318 6.318 30 H 0.060 0.940 31 H 0.200 0.800 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.092 0.908 47 H 0.066 0.934 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.088 0.912 51 H 0.095 0.905 52 H 0.075 0.925 53 H 0.109 0.891 54 H 0.120 0.880 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.918 -32.610 0.162 32.844 hybrid contribution -0.507 1.652 0.052 1.729 sum -4.425 -30.958 0.214 31.273 Atomic orbital electron populations 1.69893 1.06969 1.26054 1.59582 1.25753 0.96518 1.01638 1.03662 0.84939 0.78200 0.79020 0.76775 1.18600 1.21805 1.21792 1.19756 0.91589 0.85291 1.41213 0.90289 1.42655 1.05553 1.01563 1.89319 1.21038 0.94222 0.85500 0.97432 1.21871 0.95912 0.92724 1.01984 1.21110 0.90235 0.84886 0.98510 0.89990 1.22009 0.99317 0.99543 0.96033 1.21523 0.97894 0.92719 1.03071 1.21928 0.97594 1.00495 0.96969 1.22088 1.00234 0.81350 0.98278 1.48320 1.06539 1.09180 1.70366 1.21508 0.83161 0.91294 0.75493 1.90864 1.77421 1.25644 1.51484 1.21650 0.92915 0.95711 1.05837 1.21318 0.93137 0.96487 1.02428 1.22072 0.94251 0.93141 0.86402 0.90346 1.22231 0.95905 0.98949 1.02279 1.21594 0.99588 0.96867 0.97736 1.22205 0.98188 1.01545 0.97555 1.22737 0.88976 0.87195 1.03168 1.87924 1.67186 1.43172 1.33561 0.94001 0.80010 0.96494 0.95580 0.92525 0.93978 0.93652 0.90973 0.90391 0.90803 0.87680 0.92754 0.89333 0.87446 0.87141 0.86281 0.90825 0.93410 0.90447 0.92810 0.91153 0.90549 0.92451 0.89134 0.88040 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.04 13.06 21.65 0.28 -64.76 16 2 C -0.08 -5.24 5.50 84.86 0.47 -4.77 16 3 Si 0.98 49.09 29.55 68.60 2.03 51.12 16 4 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 7 C -0.25 -15.15 9.99 84.04 0.84 -14.31 16 8 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.75 -43.99 5.60 -343.45 -1.92 -45.92 16 10 C 0.14 6.72 6.06 86.38 0.52 7.24 16 11 C -0.09 -3.58 3.25 30.60 0.10 -3.48 16 12 C 0.16 4.57 3.01 44.97 0.14 4.71 16 13 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 14 C -0.13 -3.37 4.87 30.67 0.15 -3.22 16 15 C -0.11 -1.90 5.88 30.62 0.18 -1.72 16 16 C -0.13 -1.73 6.08 30.67 0.19 -1.55 16 17 C 0.10 1.39 6.33 86.36 0.55 1.94 16 18 N -0.61 -14.86 2.97 -795.03 -2.36 -17.22 16 19 C 0.50 14.31 7.61 87.66 0.67 14.97 16 20 O -0.57 -23.25 11.39 -3.05 -0.03 -23.29 16 21 C -0.12 -2.35 4.00 29.85 0.12 -2.23 16 22 C -0.10 -2.17 4.21 30.60 0.13 -2.04 16 23 C 0.10 1.70 2.64 30.62 0.08 1.78 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 C -0.16 -2.64 5.42 30.68 0.17 -2.47 16 26 C -0.12 -1.49 6.03 30.71 0.19 -1.31 16 27 C -0.16 -1.83 6.14 30.69 0.19 -1.64 16 28 C 0.06 0.67 6.84 72.01 0.49 1.16 16 29 O -0.40 -7.36 9.94 -148.98 -1.48 -8.84 16 30 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.37 23.67 7.67 -92.70 -0.71 22.96 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.03 1.17 6.34 -2.39 -0.02 1.15 16 34 H 0.06 2.62 6.45 -2.39 -0.02 2.61 16 35 H 0.04 1.99 7.04 -2.39 -0.02 1.97 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.96 6.66 -2.38 -0.02 1.95 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.11 1.00 5.96 -2.39 -0.01 0.99 16 44 H 0.11 1.86 7.15 -2.39 -0.02 1.84 16 45 H 0.12 1.54 8.12 -2.39 -0.02 1.52 16 46 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 47 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 48 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 50 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 53 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 54 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 55 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -81.61 413.83 1.80 -79.82 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: 0.13 Total: 36.04 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 5.16 Total: -6.95 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -4.00 Total: -127.90 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -1.52 Total: -32.12 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.03 Total: 51.12 kcal Total: -81.61 1.80 -79.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753786487.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.246 kcal (2) G-P(sol) polarization free energy of solvation -81.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds