Wall clock time and date at job start Sat Apr 11 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99813 * 2 1 4 4 H 1.48500 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47048 * 299.99805 * 3 2 1 6 6 H 1.48498 * 109.47400 * 60.00056 * 3 2 1 7 7 C 1.38809 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99772 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00299 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47262 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46875 * 64.99850 * 11 10 9 13 13 N 1.46493 * 109.46973 * 304.99412 * 11 10 9 14 14 C 1.34783 * 119.99978 * 124.65427 * 13 11 10 15 15 O 1.21275 * 119.99532 * 354.75427 * 14 13 11 16 16 C 1.50698 * 120.00172 * 174.74778 * 14 13 11 17 17 O 1.42895 * 109.47129 * 180.02562 * 16 14 13 18 18 C 1.42895 * 114.00060 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47046 * 269.99942 * 18 17 16 20 20 C 1.53004 * 109.47340 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.46873 * 60.00215 * 20 19 18 22 22 C 1.53005 * 109.47433 * 300.00261 * 21 20 19 23 23 C 1.52994 * 109.46987 * 59.99764 * 22 21 20 24 24 C 1.53003 * 109.46895 * 184.99521 * 11 10 9 25 25 C 1.54259 * 110.03564 * 301.42686 * 24 11 10 26 26 C 1.54897 * 104.19592 * 217.10765 * 25 24 11 27 27 C 1.54890 * 102.74733 * 37.94086 * 26 25 24 28 28 C 1.53876 * 110.03058 * 184.25802 * 24 11 10 29 29 H 0.97001 * 119.99936 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00031 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.47248 * 59.99099 * 10 9 7 32 32 H 1.09002 * 109.46950 * 299.99931 * 10 9 7 33 33 H 0.96997 * 120.00451 * 304.65883 * 13 11 10 34 34 H 1.09002 * 109.46770 * 60.00390 * 16 14 13 35 35 H 1.08994 * 109.47113 * 300.00537 * 16 14 13 36 36 H 1.08993 * 109.47336 * 30.00023 * 18 17 16 37 37 H 1.09001 * 109.47685 * 300.00402 * 19 18 17 38 38 H 1.09000 * 109.47071 * 60.00258 * 19 18 17 39 39 H 1.09002 * 109.47205 * 300.00343 * 20 19 18 40 40 H 1.08999 * 109.47252 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.47228 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47101 * 60.00065 * 21 20 19 43 43 H 1.09002 * 109.46817 * 299.99977 * 22 21 20 44 44 H 1.08994 * 109.47024 * 180.02562 * 22 21 20 45 45 H 1.08999 * 109.46935 * 180.02562 * 23 22 21 46 46 H 1.09002 * 109.47168 * 60.00428 * 23 22 21 47 47 H 1.09001 * 110.01491 * 62.86601 * 24 11 10 48 48 H 1.09004 * 110.48809 * 335.78186 * 25 24 11 49 49 H 1.09001 * 110.49119 * 98.42838 * 25 24 11 50 50 H 1.09001 * 110.75033 * 279.62405 * 26 25 24 51 51 H 1.08999 * 110.91454 * 156.32603 * 26 25 24 52 52 H 1.09005 * 110.48364 * 203.38310 * 27 26 25 53 53 H 1.08996 * 110.60020 * 80.78892 * 27 26 25 54 54 H 1.09007 * 110.02852 * 238.57069 * 28 24 11 55 55 H 1.08999 * 110.02854 * 359.97438 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0639 -4.8197 0.0021 12 1 0.4980 -4.8142 -0.9295 13 7 0.1441 -4.6753 1.1331 14 6 -1.1869 -4.6564 0.9212 15 8 -1.6206 -4.6629 -0.2113 16 6 -2.1359 -4.6273 2.0914 17 8 -3.4821 -4.6118 1.6127 18 6 -4.4668 -4.5832 2.6478 19 6 -4.8413 -6.0152 3.0352 20 6 -5.8951 -5.9846 4.1440 21 6 -7.1403 -5.2495 3.6439 22 6 -6.7659 -3.8175 3.2564 23 6 -5.7121 -3.8481 2.1477 24 6 1.8247 -6.1410 0.1289 25 6 2.8235 -6.2898 -1.0373 26 6 2.7833 -7.7994 -1.3817 27 6 1.2855 -8.1511 -1.2026 28 6 0.8469 -7.3245 0.0238 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6842 -3.7140 0.8921 32 1 2.6854 -3.7149 -0.8878 33 1 0.4928 -4.5933 2.0345 34 1 -1.9513 -3.7330 2.6867 35 1 -1.9799 -5.5126 2.7078 36 1 -4.0643 -4.0648 3.5180 37 1 -5.2438 -6.5337 2.1650 38 1 -3.9543 -6.5388 3.3919 39 1 -5.4922 -5.4663 5.0142 40 1 -6.1615 -7.0048 4.4204 41 1 -7.8909 -5.2273 4.4339 42 1 -7.5432 -5.7678 2.7738 43 1 -6.3630 -3.2992 4.1265 44 1 -7.6531 -3.2937 2.9006 45 1 -5.4451 -2.8280 1.8720 46 1 -6.1150 -4.3664 1.2776 47 1 2.3536 -6.1771 1.0813 48 1 2.5029 -5.6948 -1.8925 49 1 3.8249 -5.9970 -0.7217 50 1 3.3999 -8.3704 -0.6875 51 1 3.1005 -7.9725 -2.4100 52 1 1.1645 -9.2167 -1.0075 53 1 0.7149 -7.8582 -2.0839 54 1 0.9019 -7.9354 0.9249 55 1 -0.1697 -6.9574 -0.1171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754650691.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:31:09 Heat of formation + Delta-G solvation = -129.427750 kcal Electronic energy + Delta-G solvation = -30719.705077 eV Core-core repulsion = 26754.274983 eV Total energy + Delta-G solvation = -3965.430094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.20276 -40.10573 -39.07227 -37.26615 -36.79457 -35.23784 -33.14523 -31.74466 -31.47867 -30.74226 -29.56633 -28.45202 -27.59817 -25.07868 -23.55908 -23.20402 -22.85944 -21.75805 -21.30402 -20.86490 -20.57453 -19.23293 -18.29492 -17.82439 -17.11870 -16.97663 -16.73155 -16.48880 -16.04981 -15.98929 -15.48300 -15.23575 -15.14158 -14.98070 -14.80506 -14.54256 -14.22306 -13.99169 -13.94209 -13.58622 -13.58143 -13.17031 -13.05473 -13.00156 -12.88368 -12.62600 -12.27390 -12.09665 -12.07455 -11.98752 -11.93482 -11.89091 -11.81401 -11.62604 -11.50991 -11.48007 -11.43126 -11.35096 -11.25698 -11.00943 -10.73205 -10.41372 -9.92862 -9.00434 -7.93979 -5.24345 1.44991 1.46859 1.56800 1.65367 1.88977 2.54699 2.96935 3.39114 3.55449 3.69538 3.74983 3.77978 3.82505 3.88976 4.06271 4.11305 4.15705 4.22196 4.23534 4.27290 4.33554 4.35304 4.40661 4.55231 4.57202 4.59405 4.61172 4.67715 4.72730 4.75770 4.84094 4.87646 4.93547 4.94306 5.03787 5.04873 5.10783 5.11680 5.18248 5.21537 5.23471 5.28656 5.30198 5.34179 5.38276 5.47958 5.48990 5.50686 5.52892 5.65801 6.17572 6.25707 6.62999 7.31606 7.33856 8.08736 8.31421 9.29239 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006953 B = 0.003618 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4026.204602 B = 7736.875883 C =11350.143699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.298 1.298 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.744 5.744 10 C 0.142 3.858 11 C 0.151 3.849 12 H 0.060 0.940 13 N -0.700 5.700 14 C 0.511 3.489 15 O -0.576 6.576 16 C 0.051 3.949 17 O -0.391 6.391 18 C 0.082 3.918 19 C -0.137 4.137 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.111 4.111 23 C -0.121 4.121 24 C -0.087 4.087 25 C -0.120 4.120 26 C -0.115 4.115 27 C -0.126 4.126 28 C -0.114 4.114 29 H 0.249 0.751 30 H 0.371 0.629 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.412 0.588 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.049 0.951 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.070 0.930 52 H 0.079 0.921 53 H 0.046 0.954 54 H 0.080 0.920 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.152 -19.213 11.118 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.015 3.985 11 C 0.046 3.954 12 H 0.079 0.921 13 N -0.352 5.352 14 C 0.298 3.702 15 O -0.455 6.455 16 C -0.029 4.029 17 O -0.310 6.310 18 C 0.025 3.975 19 C -0.174 4.174 20 C -0.150 4.150 21 C -0.159 4.159 22 C -0.149 4.149 23 C -0.158 4.158 24 C -0.107 4.107 25 C -0.158 4.158 26 C -0.152 4.152 27 C -0.163 4.163 28 C -0.152 4.152 29 H 0.057 0.943 30 H 0.202 0.798 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.248 0.752 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.114 0.886 48 H 0.068 0.932 49 H 0.098 0.902 50 H 0.102 0.898 51 H 0.089 0.911 52 H 0.097 0.903 53 H 0.065 0.935 54 H 0.098 0.902 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.346 -19.144 10.123 22.306 hybrid contribution 0.034 1.569 0.025 1.569 sum -5.312 -17.575 10.148 20.978 Atomic orbital electron populations 1.69892 1.06846 1.25787 1.59619 1.25621 0.96284 1.01279 1.03840 0.85049 0.78336 0.79690 0.76521 1.18633 1.22546 1.21890 1.19701 0.91547 0.85213 1.40924 0.90224 1.42564 1.05573 1.01178 1.89315 1.21219 0.93700 0.84625 0.98918 1.21229 0.89797 0.94705 0.89689 0.92133 1.45571 1.04698 1.73675 1.11257 1.20802 0.83720 0.75068 0.90603 1.90689 1.77982 1.50603 1.26208 1.22280 0.82550 1.04220 0.93808 1.88029 1.13698 1.95337 1.33941 1.22396 0.88352 0.96916 0.89804 1.22016 1.00126 0.95729 0.99569 1.21498 0.94717 1.01531 0.97241 1.21589 0.97883 0.94932 1.01456 1.21496 0.97797 0.98001 0.97569 1.21625 0.94811 0.99786 0.99618 1.22055 0.95889 0.91951 1.00775 1.22428 0.99045 0.97321 0.97042 1.22465 0.95901 0.94886 1.01986 1.22363 0.96607 1.00041 0.97296 1.22121 0.97754 0.96034 0.99243 0.94266 0.79764 0.94380 0.95056 0.75164 0.89466 0.86873 0.90969 0.92375 0.91079 0.90982 0.90351 0.90135 0.92246 0.91098 0.90771 0.92993 0.92323 0.88606 0.93209 0.90183 0.89768 0.91109 0.90274 0.93465 0.90159 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.34 13.06 21.65 0.28 -62.06 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 3 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.24 -13.80 9.99 84.03 0.84 -12.96 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.74 -39.22 5.43 -343.45 -1.87 -41.09 16 10 C 0.14 5.66 5.60 86.38 0.48 6.15 16 11 C 0.15 5.14 1.71 44.99 0.08 5.22 16 12 H 0.06 2.58 6.91 -2.39 -0.02 2.57 16 13 N -0.70 -22.29 4.02 -442.54 -1.78 -24.07 16 14 C 0.51 18.97 7.19 87.66 0.63 19.60 16 15 O -0.58 -27.79 15.83 16.02 0.25 -27.53 16 16 C 0.05 1.46 6.23 71.24 0.44 1.90 16 17 O -0.39 -13.04 9.52 -129.94 -1.24 -14.28 16 18 C 0.08 1.99 2.61 30.60 0.08 2.07 16 19 C -0.14 -2.59 5.54 30.60 0.17 -2.42 16 20 C -0.11 -1.54 5.92 30.59 0.18 -1.36 16 21 C -0.12 -1.70 5.92 30.59 0.18 -1.51 16 22 C -0.11 -1.88 5.92 30.59 0.18 -1.70 16 23 C -0.12 -2.91 5.57 30.59 0.17 -2.74 16 24 C -0.09 -2.13 2.71 -10.07 -0.03 -2.16 16 25 C -0.12 -2.78 5.32 31.67 0.17 -2.62 16 26 C -0.11 -2.14 6.91 31.89 0.22 -1.92 16 27 C -0.13 -2.64 6.83 31.67 0.22 -2.42 16 28 C -0.11 -2.67 6.24 31.32 0.20 -2.47 16 29 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.37 21.78 7.31 -92.71 -0.68 21.11 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 1.26 7.17 -2.39 -0.02 1.24 16 33 H 0.41 10.54 8.83 -92.71 -0.82 9.72 16 34 H 0.09 2.36 8.08 -2.39 -0.02 2.34 16 35 H 0.11 2.25 7.87 -2.39 -0.02 2.23 16 36 H 0.07 1.54 7.79 -2.39 -0.02 1.52 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.20 7.87 -2.39 -0.02 1.19 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.05 1.38 7.52 -2.38 -0.02 1.36 16 49 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 50 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 53 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 54 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 55 H 0.04 1.12 6.87 -2.39 -0.02 1.10 16 Total: -1.00 -78.68 425.24 1.72 -76.97 By element: Atomic # 1 Polarization: 46.96 SS G_CDS: -0.64 Total: 46.32 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 4.68 Total: -3.51 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -3.36 Total: -127.22 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.98 Total: -41.81 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -78.68 1.72 -76.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754650691.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.461 kcal (2) G-P(sol) polarization free energy of solvation -78.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds