Wall clock time and date at job start Sat Apr 11 2020 05:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00104 * 2 1 4 4 H 1.48507 * 109.47251 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47289 * 119.99831 * 3 2 1 6 6 H 1.48500 * 109.47281 * 239.99830 * 3 2 1 7 7 C 1.38808 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99797 * 169.27113 * 7 2 1 9 9 N 1.36932 * 120.00349 * 349.27659 * 7 2 1 10 10 C 1.47153 * 120.97903 * 328.90601 * 9 7 2 11 11 C 1.53296 * 108.39026 * 230.51327 * 10 9 7 12 12 O 1.42968 * 109.21892 * 307.70344 * 11 10 9 13 13 C 1.42961 * 114.16871 * 62.57833 * 12 11 10 14 14 C 1.47149 * 120.98612 * 148.62805 * 9 7 2 15 15 H 1.08992 * 109.68820 * 249.21017 * 14 9 7 16 16 C 1.53004 * 109.68040 * 9.76524 * 14 9 7 17 17 N 1.46500 * 109.46866 * 299.30594 * 16 14 9 18 18 C 1.34780 * 119.99587 * 179.97438 * 17 16 14 19 19 O 1.21278 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.50709 * 119.99503 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.46648 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.46994 * 180.02562 * 21 20 18 23 23 C 1.54239 * 108.89472 * 297.88307 * 22 21 20 24 24 C 1.50475 * 108.52450 * 159.26210 * 23 22 21 25 25 C 1.54064 * 112.49782 * 94.15292 * 24 23 22 26 26 C 1.54067 * 112.81785 * 318.28062 * 25 24 23 27 27 C 1.50476 * 112.49687 * 318.29151 * 26 25 24 28 28 C 1.45537 * 108.89447 * 175.00035 * 22 21 20 29 29 H 0.97002 * 119.99846 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.68279 * 350.24311 * 10 9 7 31 31 H 1.09002 * 109.67886 * 110.75557 * 10 9 7 32 32 H 1.08997 * 109.51117 * 67.61963 * 11 10 9 33 33 H 1.08991 * 109.51682 * 187.72659 * 11 10 9 34 34 H 1.08999 * 109.51225 * 57.33987 * 13 12 11 35 35 H 1.08997 * 109.50969 * 177.49433 * 13 12 11 36 36 H 1.09002 * 109.47110 * 59.30709 * 16 14 9 37 37 H 1.08998 * 109.46774 * 179.30893 * 16 14 9 38 38 H 0.96998 * 120.00021 * 0.02562 * 17 16 14 39 39 H 1.08996 * 109.46608 * 300.00236 * 20 18 17 40 40 H 1.08997 * 109.47038 * 60.00173 * 20 18 17 41 41 H 1.09002 * 109.47109 * 299.99827 * 21 20 18 42 42 H 1.08997 * 109.47425 * 60.00208 * 21 20 18 43 43 H 1.08998 * 108.87146 * 56.39228 * 22 21 20 44 44 H 1.08997 * 109.63117 * 278.97361 * 23 22 21 45 45 H 1.09007 * 109.62774 * 39.55028 * 23 22 21 46 46 H 1.09001 * 108.87700 * 333.36906 * 24 23 22 47 47 H 1.09002 * 108.87460 * 214.92935 * 24 23 22 48 48 H 1.08997 * 108.81483 * 197.42478 * 25 24 23 49 49 H 1.09006 * 108.72968 * 79.08371 * 25 24 23 50 50 H 1.08992 * 108.87896 * 197.50880 * 26 25 24 51 51 H 1.08999 * 108.87173 * 79.06104 * 26 25 24 52 52 H 1.09001 * 109.62459 * 334.44118 * 27 26 25 53 53 H 1.09000 * 109.62585 * 213.86236 * 27 26 25 54 54 H 1.08999 * 108.89699 * 303.44012 * 28 22 21 55 55 H 1.09001 * 108.90057 * 62.03157 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0760 -1.2104 -0.1736 9 7 1.3435 -2.3776 0.2217 10 6 0.1522 -2.4219 1.0845 11 6 0.3376 -3.5485 2.1074 12 8 0.6697 -4.7577 1.4208 13 6 1.9022 -4.7011 0.6985 14 6 1.7934 -3.6325 -0.4011 15 1 1.0712 -3.9485 -1.1538 16 6 3.1609 -3.4222 -1.0544 17 7 3.0536 -2.3925 -2.0911 18 6 4.1411 -2.0384 -2.8042 19 8 5.2083 -2.5724 -2.5880 20 6 4.0308 -0.9788 -3.8702 21 6 5.3981 -0.7685 -4.5235 22 6 5.2864 0.3077 -5.6053 23 6 4.3073 -0.1780 -6.6937 24 6 3.8068 1.0194 -7.4553 25 6 4.6325 1.2973 -8.7260 26 6 6.1476 1.1293 -8.5025 27 6 6.6038 1.7078 -7.1905 28 6 6.6135 0.5824 -6.1357 29 1 -0.4850 0.8401 -0.0004 30 1 0.0390 -1.4700 1.6032 31 1 -0.7326 -2.6174 0.4787 32 1 1.1423 -3.2874 2.7947 33 1 -0.5875 -3.6887 2.6664 34 1 2.7125 -4.4441 1.3807 35 1 2.1022 -5.6711 0.2433 36 1 3.8794 -3.1038 -0.2991 37 1 3.4964 -4.3567 -1.5040 38 1 2.2001 -1.9652 -2.2637 39 1 3.3125 -1.2970 -4.6257 40 1 3.6951 -0.0444 -3.4203 41 1 6.1167 -0.4506 -3.7681 42 1 5.7334 -1.7030 -4.9734 43 1 4.8899 1.2186 -5.1569 44 1 4.8230 -0.8554 -7.3743 45 1 3.4672 -0.6926 -6.2273 46 1 3.8525 1.8943 -6.8067 47 1 2.7687 0.8477 -7.7399 48 1 4.4370 2.3174 -9.0562 49 1 4.3140 0.6080 -9.5081 50 1 6.6809 1.6275 -9.3121 51 1 6.3915 0.0671 -8.5234 52 1 5.9175 2.4953 -6.8792 53 1 7.6086 2.1159 -7.2998 54 1 7.2684 0.8739 -5.3146 55 1 7.0055 -0.3256 -6.5940 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754969279.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:32:16 Heat of formation + Delta-G solvation = -102.635745 kcal Electronic energy + Delta-G solvation = -31125.762021 eV Core-core repulsion = 27161.493716 eV Total energy + Delta-G solvation = -3964.268305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.98517 -40.21363 -39.67266 -36.96443 -35.44104 -35.19926 -33.31436 -33.04346 -32.20667 -31.19246 -28.99707 -27.47011 -26.15624 -25.35626 -25.20317 -23.57613 -22.83691 -21.44478 -21.10350 -20.96390 -20.06476 -18.74548 -17.75252 -17.60685 -17.23239 -16.65482 -16.48412 -16.36615 -16.23507 -15.95035 -15.52289 -15.41589 -15.33074 -15.00907 -14.76652 -14.53210 -14.38299 -14.15444 -13.78240 -13.50523 -13.40745 -13.10913 -13.03781 -12.92661 -12.79546 -12.74314 -12.71618 -12.48543 -12.16030 -12.00803 -11.99401 -11.85135 -11.51687 -11.38345 -11.31102 -11.26525 -11.18104 -11.11077 -10.98257 -10.83362 -10.57309 -10.52915 -9.81033 -8.61242 -7.86102 -5.37453 1.41963 1.47225 1.51016 1.78253 2.39941 2.48771 3.03375 3.29962 3.44696 3.65225 3.74028 3.85161 4.02631 4.05327 4.12417 4.17650 4.23005 4.31643 4.37287 4.39927 4.43894 4.47163 4.47678 4.55432 4.59603 4.62234 4.64292 4.65903 4.70684 4.79592 4.90445 4.97072 4.99761 5.00900 5.11757 5.13643 5.16797 5.23175 5.30090 5.30783 5.34757 5.39186 5.40182 5.42566 5.55520 5.59769 5.63759 5.64205 5.66346 5.70664 6.29389 6.37843 6.75730 7.11516 7.39720 7.77112 8.33649 9.17970 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014501 B = 0.002863 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.500674 B = 9778.707188 C =10759.017420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.030 4.030 3 Si 0.943 3.057 4 H -0.295 1.295 5 H -0.291 1.291 6 H -0.271 1.271 7 C -0.243 4.243 8 H 0.068 0.932 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.398 6.398 13 C 0.057 3.943 14 C 0.126 3.874 15 H 0.038 0.962 16 C 0.142 3.858 17 N -0.699 5.699 18 C 0.504 3.496 19 O -0.595 6.595 20 C -0.137 4.137 21 C -0.090 4.090 22 C -0.080 4.080 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.115 4.115 26 C -0.117 4.117 27 C -0.114 4.114 28 C -0.112 4.112 29 H 0.250 0.750 30 H 0.066 0.934 31 H 0.007 0.993 32 H 0.042 0.958 33 H 0.104 0.896 34 H 0.048 0.952 35 H 0.117 0.883 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.411 0.589 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.059 0.941 52 H 0.061 0.939 53 H 0.067 0.933 54 H 0.053 0.947 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.392 -0.400 -13.258 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.226 4.226 3 Si 0.772 3.228 4 H -0.221 1.221 5 H -0.217 1.217 6 H -0.196 1.196 7 C -0.373 4.373 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.023 3.977 11 C -0.032 4.032 12 O -0.316 6.316 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.055 0.945 16 C 0.018 3.982 17 N -0.349 5.349 18 C 0.292 3.708 19 O -0.478 6.478 20 C -0.176 4.176 21 C -0.128 4.128 22 C -0.098 4.098 23 C -0.151 4.151 24 C -0.158 4.158 25 C -0.152 4.152 26 C -0.155 4.155 27 C -0.152 4.152 28 C -0.149 4.149 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.083 0.917 51 H 0.078 0.922 52 H 0.080 0.920 53 H 0.086 0.914 54 H 0.071 0.929 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.896 -0.802 -13.100 15.317 hybrid contribution -0.160 1.585 0.418 1.647 sum 7.736 0.784 -12.682 14.876 Atomic orbital electron populations 1.70090 1.06130 1.25690 1.55232 1.25595 0.95724 1.00217 1.01102 0.85733 0.77844 0.80926 0.78309 1.22099 1.21749 1.19599 1.19232 0.91054 0.84032 1.43028 0.91492 1.44292 1.31761 1.03764 1.53250 1.21243 0.88119 0.96950 0.91345 1.23215 1.00470 0.85275 0.94210 1.87801 1.40970 1.35712 1.67138 1.23066 0.86027 0.99687 0.93343 1.21633 0.93889 0.88317 0.94172 0.94484 1.21066 0.96278 0.91040 0.89863 1.46105 1.12684 1.40295 1.35831 1.21186 0.83184 0.83618 0.82837 1.90603 1.29130 1.57481 1.70582 1.21779 1.01330 0.97604 0.96911 1.21372 0.94632 0.99538 0.97280 1.20092 0.96882 0.97597 0.95235 1.21472 0.98644 0.98058 0.96920 1.21333 0.99293 0.98101 0.97036 1.21900 0.94621 1.01521 0.97179 1.21332 0.95640 1.01211 0.97303 1.21306 1.01295 0.97619 0.94960 1.20505 0.96429 0.99173 0.98838 0.94059 0.91582 0.97493 0.93939 0.87757 0.93367 0.86527 0.93535 0.90478 0.75174 0.86861 0.89390 0.93224 0.91819 0.91989 0.91289 0.91597 0.92654 0.92140 0.92145 0.91996 0.91747 0.92231 0.92033 0.91420 0.92859 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.91 11.13 21.65 0.24 -49.66 16 2 C -0.03 -1.50 5.06 84.86 0.43 -1.08 16 3 Si 0.94 42.21 29.57 68.60 2.03 44.24 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.24 -11.91 7.06 84.03 0.59 -11.32 16 8 H 0.07 3.35 5.82 -2.91 -0.02 3.33 16 9 N -0.60 -27.49 3.03 -672.96 -2.04 -29.53 16 10 C 0.15 6.75 5.37 86.35 0.46 7.21 16 11 C 0.05 1.71 6.99 72.08 0.50 2.21 16 12 O -0.40 -14.60 10.74 -148.98 -1.60 -16.20 16 13 C 0.06 1.90 6.31 72.22 0.46 2.36 16 14 C 0.13 4.77 3.23 45.11 0.15 4.92 16 15 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 16 C 0.14 5.13 4.46 86.38 0.38 5.52 16 17 N -0.70 -25.67 3.78 -463.04 -1.75 -27.42 16 18 C 0.50 18.13 7.83 87.66 0.69 18.82 16 19 O -0.60 -24.76 15.98 -3.02 -0.05 -24.81 16 20 C -0.14 -3.91 5.45 29.85 0.16 -3.74 16 21 C -0.09 -2.36 3.90 30.59 0.12 -2.24 16 22 C -0.08 -1.67 1.72 -12.65 -0.02 -1.70 16 23 C -0.11 -2.12 4.91 30.20 0.15 -1.98 16 24 C -0.12 -2.06 5.31 30.14 0.16 -1.90 16 25 C -0.11 -1.69 5.85 31.31 0.18 -1.50 16 26 C -0.12 -1.70 5.31 30.14 0.16 -1.54 16 27 C -0.11 -1.83 5.61 30.20 0.17 -1.67 16 28 C -0.11 -2.12 4.44 28.74 0.13 -1.99 16 29 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 30 H 0.07 3.34 6.32 -2.39 -0.02 3.32 16 31 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 35 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.05 1.86 7.56 -2.39 -0.02 1.84 16 37 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.41 15.83 7.32 -92.71 -0.68 15.15 16 39 H 0.11 2.72 6.09 -2.39 -0.01 2.70 16 40 H 0.09 2.63 8.14 -2.39 -0.02 2.62 16 41 H 0.05 1.46 8.03 -2.39 -0.02 1.44 16 42 H 0.06 1.70 8.10 -2.39 -0.02 1.69 16 43 H 0.06 1.39 7.46 -2.39 -0.02 1.37 16 44 H 0.07 1.23 6.98 -2.39 -0.02 1.21 16 45 H 0.07 1.27 5.74 -2.38 -0.01 1.25 16 46 H 0.05 1.02 6.63 -2.39 -0.02 1.00 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 50 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.06 0.89 6.63 -2.39 -0.02 0.87 16 52 H 0.06 1.04 6.98 -2.39 -0.02 1.02 16 53 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 54 H 0.05 1.06 8.06 -2.39 -0.02 1.04 16 55 H 0.06 1.15 7.46 -2.39 -0.02 1.14 16 Total: -1.00 -59.30 403.68 1.89 -57.41 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: 0.18 Total: 35.59 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 4.87 Total: 10.39 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -3.55 Total: -106.62 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -1.65 Total: -41.01 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -59.30 1.89 -57.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754969279.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.222 kcal (2) G-P(sol) polarization free energy of solvation -59.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds