Wall clock time and date at job start Sat Apr 11 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00099 * 2 1 4 4 H 1.09000 * 110.91948 * 26.09329 * 3 2 1 5 5 C 1.55116 * 111.16199 * 262.16649 * 3 2 1 6 6 N 1.47429 * 104.94698 * 205.13120 * 5 3 2 7 7 C 1.36934 * 125.65176 * 204.03984 * 6 5 3 8 8 H 1.08000 * 120.00185 * 179.97438 * 7 6 5 9 9 C 1.38817 * 119.99816 * 359.96079 * 7 6 5 10 10 N 1.31620 * 119.99912 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99744 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47247 * 89.99769 * 11 9 7 13 13 H 1.48499 * 109.47282 * 209.99269 * 11 9 7 14 14 H 1.48498 * 109.47398 * 329.99703 * 11 9 7 15 15 C 1.47023 * 108.69811 * 24.00148 * 6 5 3 16 16 C 1.54321 * 107.27456 * 358.94749 * 15 6 5 17 17 H 1.08992 * 110.72388 * 96.34439 * 16 15 6 18 18 N 1.46504 * 110.71756 * 219.44438 * 16 15 6 19 19 C 1.34768 * 119.99870 * 271.14990 * 18 16 15 20 20 O 1.21287 * 120.00075 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00550 * 180.02562 * 19 18 16 22 22 C 1.52997 * 109.47721 * 180.02562 * 21 19 18 23 23 H 1.09002 * 109.47153 * 54.99889 * 22 21 19 24 24 C 1.53002 * 109.46817 * 295.00119 * 22 21 19 25 25 C 1.53000 * 109.47060 * 175.00208 * 22 21 19 26 26 C 1.53002 * 109.47233 * 299.99657 * 25 22 21 27 27 C 1.52997 * 109.47415 * 180.02562 * 26 25 22 28 28 C 1.53002 * 109.46978 * 59.99902 * 27 26 25 29 29 C 1.52993 * 109.47066 * 300.00153 * 28 27 26 30 30 C 1.53000 * 109.47165 * 60.00395 * 29 28 27 31 31 H 1.09003 * 109.47160 * 300.00268 * 1 2 3 32 32 H 1.09006 * 109.46793 * 60.00047 * 1 2 3 33 33 H 1.08999 * 109.47093 * 179.97438 * 1 2 3 34 34 H 1.09000 * 110.42333 * 86.19974 * 5 3 2 35 35 H 1.09007 * 110.30381 * 324.00076 * 5 3 2 36 36 H 0.97006 * 119.99411 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.88181 * 239.52197 * 15 6 5 38 38 H 1.09007 * 109.87660 * 118.35851 * 15 6 5 39 39 H 0.97005 * 120.00027 * 91.15507 * 18 16 15 40 40 H 1.09000 * 109.46692 * 59.99898 * 21 19 18 41 41 H 1.09008 * 109.46977 * 300.00401 * 21 19 18 42 42 H 1.09002 * 109.47075 * 299.99262 * 24 22 21 43 43 H 1.08996 * 109.47407 * 60.00219 * 24 22 21 44 44 H 1.09000 * 109.46986 * 179.97438 * 24 22 21 45 45 H 1.08992 * 109.47399 * 59.99823 * 25 22 21 46 46 H 1.09002 * 109.47075 * 300.00932 * 26 25 22 47 47 H 1.09000 * 109.46986 * 60.00203 * 26 25 22 48 48 H 1.09002 * 109.47045 * 300.00068 * 27 26 25 49 49 H 1.09001 * 109.46922 * 180.02562 * 27 26 25 50 50 H 1.08996 * 109.46698 * 180.02562 * 28 27 26 51 51 H 1.09002 * 109.46838 * 60.00684 * 28 27 26 52 52 H 1.09001 * 109.47730 * 299.99430 * 29 28 27 53 53 H 1.09004 * 109.46672 * 179.97438 * 29 28 27 54 54 H 1.09001 * 109.46741 * 179.97438 * 30 29 28 55 55 H 1.09002 * 109.47398 * 59.99709 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3332 2.0329 0.4478 5 6 2.4181 1.7368 -1.4331 6 7 3.4968 2.7232 -1.2407 7 6 3.8518 3.7015 -2.1308 8 1 4.6597 4.3784 -1.8954 9 6 3.1733 3.8229 -3.3357 10 7 2.1892 2.9974 -3.6229 11 14 3.6572 5.1577 -4.5495 12 1 4.6964 4.6346 -5.4724 13 1 2.4645 5.5720 -5.3312 14 1 4.1954 6.3277 -3.8102 15 6 4.1275 2.4832 0.0655 16 6 3.3824 1.3033 0.7243 17 1 3.9105 0.3665 0.5471 18 7 3.2108 1.5358 2.1605 19 6 4.1625 1.1351 3.0265 20 8 5.1614 0.5826 2.6167 21 6 3.9858 1.3737 4.5039 22 6 5.2003 0.8280 5.2576 23 1 6.1094 1.2716 4.8515 24 6 5.2591 -0.6924 5.0973 25 6 5.0800 1.1801 6.7417 26 6 5.0213 2.7006 6.9020 27 6 4.9016 3.0528 8.3861 28 6 6.1164 2.5071 9.1393 29 6 6.1751 0.9867 8.9790 30 6 6.2949 0.6346 7.4949 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.5731 2.1943 -1.9476 35 1 2.7848 0.8787 -1.9964 36 1 1.7154 3.0821 -4.4652 37 1 4.0384 3.3727 0.6892 38 1 5.1783 2.2278 -0.0717 39 1 2.4120 1.9780 2.4882 40 1 3.0853 0.8655 4.8488 41 1 3.8934 2.4437 4.6907 42 1 4.3500 -1.1360 5.5036 43 1 5.3448 -0.9433 4.0401 44 1 6.1246 -1.0812 5.6339 45 1 4.1710 0.7366 7.1478 46 1 5.9303 3.1442 6.4958 47 1 4.1560 3.0894 6.3651 48 1 3.9927 2.6092 8.7926 49 1 4.8593 4.1360 8.5002 50 1 6.0309 2.7576 10.1966 51 1 7.0253 2.9507 8.7328 52 1 5.2663 0.5430 9.3856 53 1 7.0409 0.5980 9.5152 54 1 6.3372 -0.4486 7.3808 55 1 7.2038 1.0781 7.0884 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213563313.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:33:20 Heat of formation + Delta-G solvation = -105.610215 kcal Electronic energy + Delta-G solvation = -30608.483015 eV Core-core repulsion = 26644.085726 eV Total energy + Delta-G solvation = -3964.397288 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 5.99 seconds Orbital eigenvalues (eV) -41.25672 -40.08960 -39.29081 -37.53651 -35.82346 -35.38498 -33.69317 -31.75701 -30.91532 -30.26774 -29.20390 -28.14726 -27.48298 -26.02209 -24.27288 -23.22884 -22.47978 -22.09638 -21.36177 -20.66337 -20.54445 -19.13997 -18.20684 -17.81594 -17.20320 -16.67071 -16.42844 -16.27590 -15.86357 -15.69216 -15.37087 -15.23100 -14.99187 -14.89667 -14.70650 -14.55940 -14.18087 -14.05627 -13.95214 -13.70532 -13.30046 -13.19854 -13.16641 -12.90737 -12.75036 -12.65595 -12.53965 -12.34448 -12.28019 -12.05789 -12.00052 -11.95587 -11.91208 -11.88012 -11.58386 -11.52236 -11.22680 -10.94475 -10.81879 -10.69751 -10.65041 -10.49162 -10.02587 -8.98807 -7.82197 -5.29644 1.46124 1.48547 1.57185 1.72213 2.14379 2.44317 2.75013 3.28544 3.58690 3.65924 3.75542 3.81377 3.87577 3.95962 4.00805 4.06877 4.13177 4.25437 4.36001 4.44277 4.48310 4.50316 4.54290 4.60939 4.61638 4.66280 4.72497 4.73119 4.76799 4.80871 4.83547 4.87301 4.88002 4.94489 4.99513 5.07538 5.13671 5.25465 5.28541 5.30308 5.34510 5.38622 5.40331 5.43008 5.48191 5.49275 5.55763 5.64826 5.67290 5.72618 6.17938 6.30964 6.61811 7.03185 7.34847 7.67810 8.30458 9.19250 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015582 B = 0.002330 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.524120 B =12016.474790 C =13029.202894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.078 3.922 4 H 0.091 0.909 5 C 0.146 3.854 6 N -0.619 5.619 7 C -0.243 4.243 8 H 0.082 0.918 9 C -0.063 4.063 10 N -0.948 5.948 11 Si 0.985 3.015 12 H -0.289 1.289 13 H -0.289 1.289 14 H -0.267 1.267 15 C 0.132 3.868 16 C 0.153 3.847 17 H 0.074 0.926 18 N -0.707 5.707 19 C 0.507 3.493 20 O -0.579 6.579 21 C -0.129 4.129 22 C -0.066 4.066 23 H 0.053 0.947 24 C -0.151 4.151 25 C -0.071 4.071 26 C -0.121 4.121 27 C -0.117 4.117 28 C -0.122 4.122 29 C -0.117 4.117 30 C -0.117 4.117 31 H 0.062 0.938 32 H 0.035 0.965 33 H 0.102 0.898 34 H 0.087 0.913 35 H -0.014 1.014 36 H 0.250 0.750 37 H 0.042 0.958 38 H 0.012 0.988 39 H 0.415 0.585 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.061 0.939 43 H 0.042 0.958 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.053 0.947 52 H 0.066 0.934 53 H 0.061 0.939 54 H 0.064 0.936 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.515 -2.888 27.035 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C 0.018 3.982 4 H 0.109 0.891 5 C 0.020 3.980 6 N -0.347 5.347 7 C -0.372 4.372 8 H 0.100 0.900 9 C -0.256 4.256 10 N -0.597 5.597 11 Si 0.812 3.188 12 H -0.216 1.216 13 H -0.215 1.215 14 H -0.192 1.192 15 C 0.006 3.994 16 C 0.047 3.953 17 H 0.093 0.907 18 N -0.359 5.359 19 C 0.296 3.704 20 O -0.459 6.459 21 C -0.168 4.168 22 C -0.085 4.085 23 H 0.071 0.929 24 C -0.208 4.208 25 C -0.090 4.090 26 C -0.158 4.158 27 C -0.155 4.155 28 C -0.159 4.159 29 C -0.154 4.154 30 C -0.154 4.154 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.004 0.996 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.030 0.970 39 H 0.252 0.748 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.072 0.928 52 H 0.085 0.915 53 H 0.080 0.920 54 H 0.083 0.917 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.758 -3.376 26.578 26.803 hybrid contribution 0.072 0.782 -1.356 1.567 sum -0.686 -2.594 25.222 25.364 Atomic orbital electron populations 1.22992 0.79267 1.03900 1.00754 1.87843 1.21780 1.26875 1.94937 1.23635 0.93291 0.84857 0.96408 0.89100 1.22089 0.93172 0.90210 0.92542 1.44566 1.37918 1.35362 1.16850 1.19449 1.13968 1.06805 0.96939 0.90004 1.25676 0.98649 1.01678 0.99574 1.70000 1.25341 1.40177 1.24163 0.84992 0.76786 0.78546 0.78454 1.21641 1.21466 1.19204 1.21672 0.94923 0.95774 0.87053 1.21580 0.95616 0.97468 0.80680 0.90740 1.45874 1.23649 1.61326 1.05076 1.21541 0.81898 0.76724 0.90207 1.90671 1.30651 1.43797 1.80771 1.21885 1.01861 1.05141 0.87914 1.20859 0.96686 0.96044 0.94924 0.92893 1.21942 1.01856 0.95478 1.01540 1.21122 0.99185 0.95893 0.92782 1.21701 1.01990 0.95244 0.96854 1.21520 0.98448 1.00619 0.94885 1.21555 0.98364 0.95721 1.00270 1.21519 1.02024 0.96079 0.95790 1.21632 0.97672 1.00735 0.95405 0.91899 0.94657 0.87919 0.89486 0.99628 0.94016 0.94017 0.97003 0.74837 0.86315 0.86533 0.92015 0.93925 0.92319 0.89968 0.93074 0.90797 0.91364 0.91875 0.91577 0.92822 0.91492 0.92007 0.91712 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.85 113.37 1.23 1.93 16 2 O -0.40 -14.18 10.52 -148.98 -1.57 -15.75 16 3 C 0.08 2.96 3.17 32.06 0.10 3.06 16 4 H 0.09 3.03 7.69 -2.39 -0.02 3.01 16 5 C 0.15 7.40 5.63 86.93 0.49 7.89 16 6 N -0.62 -32.92 3.40 -691.55 -2.35 -35.27 16 7 C -0.24 -13.84 10.27 84.04 0.86 -12.97 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 10 N -0.95 -56.19 10.09 21.65 0.22 -55.97 16 11 Si 0.98 45.60 29.55 68.60 2.03 47.62 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 C 0.13 5.91 7.00 86.73 0.61 6.52 16 16 C 0.15 5.82 3.00 46.18 0.14 5.95 16 17 H 0.07 3.25 7.62 -2.39 -0.02 3.23 16 18 N -0.71 -19.69 5.12 -436.92 -2.24 -21.92 16 19 C 0.51 14.25 7.55 87.66 0.66 14.91 16 20 O -0.58 -21.76 13.65 -3.05 -0.04 -21.80 16 21 C -0.13 -2.25 4.96 29.85 0.15 -2.10 16 22 C -0.07 -1.25 1.62 -10.79 -0.02 -1.27 16 23 H 0.05 1.28 7.96 -2.39 -0.02 1.26 16 24 C -0.15 -3.18 8.58 71.98 0.62 -2.57 16 25 C -0.07 -0.98 1.78 -10.79 -0.02 -1.00 16 26 C -0.12 -1.56 4.86 30.59 0.15 -1.41 16 27 C -0.12 -1.30 5.92 30.59 0.18 -1.12 16 28 C -0.12 -1.40 5.92 30.59 0.18 -1.21 16 29 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 30 C -0.12 -1.66 4.85 30.59 0.15 -1.51 16 31 H 0.06 1.30 8.12 -2.39 -0.02 1.28 16 32 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 4.85 5.87 -2.39 -0.01 4.83 16 35 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 36 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 37 H 0.04 1.75 8.03 -2.39 -0.02 1.74 16 38 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.41 8.49 8.54 -92.70 -0.79 7.70 16 40 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.12 1.57 6.17 -2.38 -0.01 1.56 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.04 1.21 5.95 -2.39 -0.01 1.19 16 44 H 0.06 1.14 6.43 -2.39 -0.02 1.12 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.07 0.82 6.32 -2.39 -0.02 0.81 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 54 H 0.06 0.93 6.43 -2.39 -0.02 0.91 16 55 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -72.15 414.43 2.24 -69.91 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.06 Total: 22.39 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 6.13 Total: 10.79 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -4.37 Total: -113.17 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.61 Total: -37.55 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -72.15 2.24 -69.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213563313.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.698 kcal (2) G-P(sol) polarization free energy of solvation -72.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.99 seconds