Wall clock time and date at job start Sat Apr 11 2020 05:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47092 * 239.99331 * 2 1 3 5 5 C 1.50707 * 109.46780 * 65.00263 * 4 2 1 6 6 O 1.21281 * 120.00109 * 359.97438 * 5 4 2 7 7 N 1.34775 * 119.99698 * 180.27525 * 5 4 2 8 8 C 1.47042 * 120.04309 * 359.72438 * 7 5 4 9 9 C 1.53571 * 107.23191 * 130.35707 * 8 7 5 10 10 O 1.42614 * 108.29476 * 55.94766 * 9 8 7 11 11 C 1.42786 * 115.83709 * 295.39317 * 10 9 8 12 12 H 1.09000 * 111.87012 * 290.16114 * 11 10 9 13 13 C 1.54899 * 107.17044 * 166.91746 * 11 10 9 14 14 N 1.45979 * 107.29237 * 266.41603 * 13 11 10 15 15 C 1.36933 * 125.55271 * 180.33993 * 14 13 11 16 16 H 1.08005 * 120.00184 * 186.57629 * 15 14 13 17 17 C 1.38814 * 119.99950 * 6.57991 * 15 14 13 18 18 N 1.31612 * 119.99979 * 7.95040 * 17 15 14 19 19 Si 1.86801 * 119.99875 * 187.95486 * 17 15 14 20 20 H 1.48501 * 109.47158 * 94.98079 * 19 17 15 21 21 H 1.48495 * 109.46925 * 214.97565 * 19 17 15 22 22 H 1.48499 * 109.47127 * 334.97486 * 19 17 15 23 23 C 1.47613 * 108.80778 * 0.40773 * 14 13 11 24 24 C 1.45532 * 120.03442 * 179.44968 * 7 5 4 25 25 H 1.08999 * 110.29786 * 345.57973 * 24 7 5 26 26 C 1.53000 * 109.46927 * 119.99798 * 2 1 3 27 27 C 1.52996 * 109.47082 * 282.85388 * 26 2 1 28 28 C 1.52994 * 109.47473 * 59.90374 * 27 26 2 29 29 C 1.53008 * 109.47065 * 179.90530 * 27 26 2 30 30 C 1.53002 * 109.47259 * 299.90092 * 27 26 2 31 31 H 1.08996 * 109.46823 * 74.34168 * 1 2 3 32 32 H 1.09000 * 109.47353 * 194.34128 * 1 2 3 33 33 H 1.09001 * 109.46996 * 314.33804 * 1 2 3 34 34 H 1.08998 * 109.47143 * 305.00754 * 4 2 1 35 35 H 1.08996 * 109.47487 * 185.00086 * 4 2 1 36 36 H 1.08993 * 109.90256 * 249.78973 * 8 7 5 37 37 H 1.09003 * 109.89744 * 10.92603 * 8 7 5 38 38 H 1.08999 * 109.69648 * 175.64563 * 9 8 7 39 39 H 1.08999 * 109.70150 * 296.20255 * 9 8 7 40 40 H 1.08998 * 109.89661 * 26.07690 * 13 11 10 41 41 H 1.09005 * 109.89145 * 147.28352 * 13 11 10 42 42 H 0.97001 * 120.00154 * 180.02562 * 18 17 15 43 43 H 1.08996 * 110.42425 * 217.64747 * 23 14 13 44 44 H 1.09002 * 110.52916 * 95.22054 * 23 14 13 45 45 H 1.09006 * 109.47302 * 42.85053 * 26 2 1 46 46 H 1.09000 * 109.47121 * 162.84843 * 26 2 1 47 47 H 1.09004 * 109.47105 * 37.27916 * 28 27 26 48 48 H 1.08996 * 109.47233 * 157.27838 * 28 27 26 49 49 H 1.09004 * 109.47249 * 277.28317 * 28 27 26 50 50 H 1.08998 * 109.47014 * 59.99913 * 29 27 26 51 51 H 1.08999 * 109.47021 * 179.97438 * 29 27 26 52 52 H 1.08999 * 109.46990 * 299.99835 * 29 27 26 53 53 H 1.09001 * 109.46650 * 59.99913 * 30 27 26 54 54 H 1.08999 * 109.47480 * 180.02562 * 30 27 26 55 55 H 1.09003 * 109.46953 * 300.00538 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 8 1.0110 1.0868 -2.3634 7 7 1.9801 -0.3948 -3.7004 8 6 2.7439 -1.6437 -3.8387 9 6 2.0156 -2.5097 -4.8770 10 8 1.8916 -1.7557 -6.0811 11 6 1.0776 -0.5853 -6.0014 12 1 0.0222 -0.8318 -5.8850 13 6 1.3441 0.2452 -7.2815 14 7 2.3920 1.2101 -6.9623 15 6 2.9108 2.1371 -7.8264 16 1 3.7580 2.7375 -7.5295 17 6 2.3477 2.3052 -9.0840 18 7 1.2248 1.6905 -9.3898 19 14 3.1837 3.4037 -10.3425 20 1 4.0436 2.5774 -11.2274 21 1 2.1533 4.0947 -11.1585 22 1 4.0187 4.4124 -9.6420 23 6 2.8010 1.0210 -5.5566 24 6 1.5852 0.3498 -4.8867 25 1 0.8228 1.0868 -4.6342 26 6 2.0400 -0.7212 1.2493 27 6 1.9074 0.2028 2.4614 28 6 0.4383 0.5838 2.6541 29 6 2.4152 -0.5192 3.7112 30 6 2.7364 1.4681 2.2314 31 1 -0.3633 0.2774 -0.9895 32 1 -0.3634 -0.9956 0.2545 33 1 -0.3633 0.7182 0.7350 34 1 1.6053 -1.7199 -1.2950 35 1 3.1263 -0.7997 -1.2056 36 1 3.7548 -1.4242 -4.1820 37 1 2.7807 -2.1640 -2.8816 38 1 2.5909 -3.4155 -5.0683 39 1 1.0259 -2.7748 -4.5052 40 1 1.6727 -0.4108 -8.0875 41 1 0.4374 0.7735 -7.5763 42 1 0.8315 1.8076 -10.2687 43 1 3.0101 1.9830 -5.0887 44 1 3.6746 0.3719 -5.4967 45 1 1.4508 -1.6234 1.4140 46 1 3.0869 -0.9913 1.1110 47 1 -0.1932 -0.2727 2.4178 48 1 0.2731 0.8824 3.6893 49 1 0.1881 1.4131 1.9924 50 1 3.4619 -0.7906 3.5739 51 1 2.3212 0.1392 4.5747 52 1 1.8246 -1.4206 3.8751 53 1 2.3747 1.9824 1.3410 54 1 2.6424 2.1262 3.0951 55 1 3.7832 1.1966 2.0941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218671597.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:33:28 Heat of formation + Delta-G solvation = -75.681638 kcal Electronic energy + Delta-G solvation = -31500.816533 eV Core-core repulsion = 27537.717045 eV Total energy + Delta-G solvation = -3963.099488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.86535 -40.25295 -39.07254 -37.53887 -35.96714 -34.86988 -34.14459 -31.49756 -30.08916 -29.23763 -28.95539 -28.13598 -27.87522 -27.01199 -26.18013 -24.45714 -22.68481 -22.21547 -21.03989 -19.73545 -19.54320 -19.06399 -18.31197 -17.86803 -17.02459 -16.88510 -16.60947 -16.21014 -15.93273 -15.67384 -15.55493 -15.19388 -15.00500 -14.89959 -14.62206 -14.37559 -14.24794 -13.88343 -13.65092 -13.53333 -13.52559 -13.18321 -12.92994 -12.77436 -12.72404 -12.66805 -12.57718 -12.54231 -12.45412 -12.30061 -12.14020 -12.06080 -11.85481 -11.66363 -11.53518 -11.42943 -11.32708 -11.17117 -11.10648 -10.93630 -10.80655 -10.56738 -9.55831 -8.95538 -7.88454 -5.28655 1.44538 1.47150 1.56224 1.62766 1.83215 2.47520 2.81046 3.28029 3.43220 3.51879 3.63070 3.76221 3.86227 3.94400 4.00030 4.05272 4.10774 4.16104 4.23794 4.28638 4.31919 4.38011 4.46491 4.54319 4.67414 4.70105 4.74405 4.76059 4.78272 4.81514 4.85970 4.89874 4.92804 4.96371 4.97388 5.04835 5.10530 5.15335 5.19045 5.22856 5.28071 5.29170 5.40705 5.46082 5.49485 5.55227 5.58245 5.61940 5.63553 5.70184 6.13691 6.35339 6.41000 7.03508 7.18285 7.68426 8.32413 9.19911 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019736 B = 0.002499 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.375553 B =11200.284155 C =11879.830622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.076 4.076 3 H 0.061 0.939 4 C -0.126 4.126 5 C 0.505 3.495 6 O -0.578 6.578 7 N -0.602 5.602 8 C 0.070 3.930 9 C 0.038 3.962 10 O -0.392 6.392 11 C 0.077 3.923 12 H 0.085 0.915 13 C 0.191 3.809 14 N -0.618 5.618 15 C -0.248 4.248 16 H 0.081 0.919 17 C -0.063 4.063 18 N -0.948 5.948 19 Si 0.984 3.016 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.268 1.268 23 C 0.139 3.861 24 C 0.116 3.884 25 H 0.084 0.916 26 C -0.096 4.096 27 C -0.069 4.069 28 C -0.147 4.147 29 C -0.137 4.137 30 C -0.146 4.146 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.064 0.936 40 H 0.010 0.990 41 H 0.043 0.957 42 H 0.250 0.750 43 H 0.030 0.970 44 H 0.032 0.968 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.051 0.949 49 H 0.051 0.949 50 H 0.058 0.942 51 H 0.052 0.948 52 H 0.060 0.940 53 H 0.045 0.955 54 H 0.053 0.947 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 -12.358 26.089 28.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.095 4.095 3 H 0.079 0.921 4 C -0.165 4.165 5 C 0.297 3.703 6 O -0.458 6.458 7 N -0.335 5.335 8 C -0.051 4.051 9 C -0.038 4.038 10 O -0.311 6.311 11 C 0.018 3.982 12 H 0.103 0.897 13 C 0.066 3.934 14 N -0.345 5.345 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.256 4.256 18 N -0.596 5.596 19 Si 0.811 3.189 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.193 1.193 23 C 0.013 3.987 24 C 0.010 3.990 25 H 0.102 0.898 26 C -0.134 4.134 27 C -0.069 4.069 28 C -0.204 4.204 29 C -0.195 4.195 30 C -0.204 4.204 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.028 0.972 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.049 0.951 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.072 0.928 52 H 0.079 0.921 53 H 0.064 0.936 54 H 0.072 0.928 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.001 -11.801 25.799 28.440 hybrid contribution -0.013 1.119 -1.190 1.634 sum 1.987 -10.682 24.609 26.901 Atomic orbital electron populations 1.22374 0.95651 1.02131 1.01750 1.20964 0.96007 0.99543 0.92990 0.92082 1.21894 1.04275 1.00483 0.89886 1.21708 0.78048 0.85471 0.85121 1.90673 1.41697 1.26758 1.86634 1.47809 1.55576 1.25380 1.04773 1.22842 0.95459 0.83789 1.03035 1.23280 1.01096 0.94726 0.84736 1.87882 1.70235 1.37965 1.34987 1.23510 0.93943 0.85187 0.95549 0.89738 1.20951 0.92228 0.88719 0.91533 1.44368 1.43909 1.38338 1.07889 1.19411 1.10333 1.13010 0.94873 0.90161 1.25719 0.97824 1.02018 1.00050 1.70118 1.20012 1.48203 1.21282 0.84985 0.77247 0.78037 0.78586 1.21184 1.21779 1.19263 1.21664 0.95385 0.97055 0.84628 1.21790 0.97459 0.94335 0.85464 0.89822 1.21734 1.01839 0.97788 0.92016 1.20530 0.95336 0.95372 0.95647 1.22258 0.95806 1.01382 1.00922 1.21855 1.01184 1.00190 0.96221 1.21998 0.99941 0.97374 1.01040 0.94784 0.91943 0.91145 0.86089 0.86499 0.90590 0.84125 0.84872 0.91782 0.97151 0.93896 0.94030 0.95212 0.95063 0.90553 0.90707 0.91811 0.92962 0.93065 0.92285 0.92840 0.92115 0.93603 0.92834 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 7.66 71.98 0.55 -2.66 16 2 C -0.08 -1.32 1.82 -10.79 -0.02 -1.34 16 3 H 0.06 1.38 5.53 -2.39 -0.01 1.36 16 4 C -0.13 -2.02 3.48 29.85 0.10 -1.92 16 5 C 0.51 14.02 7.25 87.66 0.64 14.65 16 6 O -0.58 -21.45 13.50 -3.03 -0.04 -21.49 16 7 N -0.60 -17.30 2.76 -793.31 -2.19 -19.48 16 8 C 0.07 1.38 6.27 86.47 0.54 1.93 16 9 C 0.04 0.84 7.02 72.17 0.51 1.35 16 10 O -0.39 -14.03 9.98 -148.98 -1.49 -15.52 16 11 C 0.08 3.10 4.00 31.61 0.13 3.22 16 12 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 13 C 0.19 10.02 5.08 87.13 0.44 10.46 16 14 N -0.62 -33.89 3.37 -694.39 -2.34 -36.23 16 15 C -0.25 -14.55 10.26 84.03 0.86 -13.69 16 16 H 0.08 4.54 7.84 -2.91 -0.02 4.52 16 17 C -0.06 -3.68 5.44 84.86 0.46 -3.22 16 18 N -0.95 -58.32 10.47 21.65 0.23 -58.10 16 19 Si 0.98 47.00 29.56 68.60 2.03 49.03 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.14 6.31 6.80 86.57 0.59 6.90 16 24 C 0.12 4.52 3.19 45.95 0.15 4.67 16 25 H 0.08 3.71 7.08 -2.39 -0.02 3.69 16 26 C -0.10 -1.12 3.87 30.59 0.12 -1.00 16 27 C -0.07 -0.86 0.80 -52.18 -0.04 -0.91 16 28 C -0.15 -2.01 7.00 71.98 0.50 -1.51 16 29 C -0.14 -1.37 8.36 71.98 0.60 -0.77 16 30 C -0.15 -2.17 8.06 71.98 0.58 -1.59 16 31 H 0.03 0.91 5.84 -2.39 -0.01 0.90 16 32 H 0.06 0.98 7.79 -2.39 -0.02 0.96 16 33 H 0.07 1.37 4.43 -2.39 -0.01 1.36 16 34 H 0.12 1.26 7.59 -2.39 -0.02 1.24 16 35 H 0.12 1.34 7.91 -2.39 -0.02 1.32 16 36 H 0.08 1.62 7.59 -2.39 -0.02 1.60 16 37 H 0.14 1.37 5.94 -2.39 -0.01 1.35 16 38 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.01 0.61 7.84 -2.39 -0.02 0.59 16 41 H 0.04 2.51 6.86 -2.38 -0.02 2.49 16 42 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 44 H 0.03 1.38 7.34 -2.39 -0.02 1.36 16 45 H 0.08 0.73 7.80 -2.38 -0.02 0.71 16 46 H 0.07 0.71 7.96 -2.39 -0.02 0.69 16 47 H 0.06 0.81 6.86 -2.38 -0.02 0.79 16 48 H 0.05 0.66 7.93 -2.39 -0.02 0.64 16 49 H 0.05 0.85 6.00 -2.39 -0.01 0.84 16 50 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.05 0.54 8.12 -2.39 -0.02 0.52 16 52 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 53 H 0.04 0.84 6.08 -2.39 -0.01 0.83 16 54 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 55 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -76.07 401.10 3.77 -72.31 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.86 Total: 14.90 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 6.71 Total: 14.59 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.30 Total: -113.81 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.53 Total: -37.01 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -76.07 3.77 -72.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218671597.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.374 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds