Wall clock time and date at job start Sat Apr 11 2020 05:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46578 * 2 1 4 4 C 1.52996 * 109.47105 * 120.00225 * 2 1 3 5 5 C 1.50703 * 109.47236 * 295.00095 * 4 2 1 6 6 O 1.21288 * 119.99848 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99864 * 179.97438 * 5 4 2 8 8 C 1.47036 * 120.04305 * 0.02562 * 7 5 4 9 9 C 1.53568 * 107.23836 * 130.35364 * 8 7 5 10 10 O 1.42611 * 108.29278 * 55.94265 * 9 8 7 11 11 C 1.42787 * 115.84492 * 295.39872 * 10 9 8 12 12 H 1.08995 * 111.86971 * 290.16345 * 11 10 9 13 13 C 1.54901 * 107.17801 * 166.91437 * 11 10 9 14 14 N 1.45982 * 107.28712 * 266.42062 * 13 11 10 15 15 C 1.36935 * 125.54517 * 180.34087 * 14 13 11 16 16 H 1.08006 * 120.00133 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00458 * 0.07164 * 15 14 13 18 18 N 1.31624 * 119.99587 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00661 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47085 * 59.99699 * 19 17 15 21 21 H 1.48496 * 109.47752 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47201 * 300.00237 * 19 17 15 23 23 C 1.47610 * 108.81255 * 0.40281 * 14 13 11 24 24 C 1.45522 * 120.03556 * 179.72551 * 7 5 4 25 25 H 1.09001 * 110.29932 * 345.58040 * 24 7 5 26 26 C 1.52993 * 109.47008 * 240.00259 * 2 1 3 27 27 C 1.53005 * 109.47472 * 77.05583 * 26 2 1 28 28 C 1.53002 * 109.46688 * 60.07386 * 27 26 2 29 29 C 1.52997 * 109.47401 * 180.02562 * 27 26 2 30 30 C 1.53001 * 109.47113 * 300.08035 * 27 26 2 31 31 H 1.09004 * 109.46876 * 165.58121 * 1 2 3 32 32 H 1.09000 * 109.47031 * 285.58031 * 1 2 3 33 33 H 1.08998 * 109.47451 * 45.57964 * 1 2 3 34 34 H 1.09003 * 109.46952 * 54.99989 * 4 2 1 35 35 H 1.09001 * 109.47202 * 175.00247 * 4 2 1 36 36 H 1.09005 * 109.90307 * 249.78935 * 8 7 5 37 37 H 1.09005 * 109.90353 * 10.92239 * 8 7 5 38 38 H 1.08997 * 109.70224 * 175.64406 * 9 8 7 39 39 H 1.09005 * 109.69954 * 296.20414 * 9 8 7 40 40 H 1.09003 * 109.89025 * 26.07723 * 13 11 10 41 41 H 1.09002 * 109.89103 * 147.28574 * 13 11 10 42 42 H 0.96997 * 119.99775 * 179.97438 * 18 17 15 43 43 H 1.08998 * 110.41818 * 217.64666 * 23 14 13 44 44 H 1.09003 * 110.52253 * 95.22898 * 23 14 13 45 45 H 1.09005 * 109.47299 * 317.06059 * 26 2 1 46 46 H 1.08997 * 109.47379 * 197.05685 * 26 2 1 47 47 H 1.09004 * 109.47168 * 60.00963 * 28 27 26 48 48 H 1.09005 * 109.47206 * 180.02562 * 28 27 26 49 49 H 1.08995 * 109.47970 * 300.00249 * 28 27 26 50 50 H 1.08997 * 109.47138 * 60.00226 * 29 27 26 51 51 H 1.09005 * 109.46956 * 180.02562 * 29 27 26 52 52 H 1.08997 * 109.47088 * 299.99602 * 29 27 26 53 53 H 1.09002 * 109.47058 * 82.80849 * 30 27 26 54 54 H 1.08995 * 109.46984 * 202.80845 * 30 27 26 55 55 H 1.09002 * 109.46878 * 322.80728 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0117 1.0874 2.3633 7 7 1.9845 -0.3921 3.7001 8 6 2.7483 -1.6409 3.8385 9 6 3.9337 -1.3485 4.7699 10 8 3.4224 -0.8289 5.9956 11 6 2.7558 0.4308 5.9077 12 1 3.4500 1.2434 5.6937 13 6 2.0033 0.6444 7.2447 14 7 0.6420 0.1507 7.0599 15 6 -0.3458 0.1656 8.0082 16 1 -1.3252 -0.2250 7.7740 17 6 -0.0888 0.6836 9.2701 18 7 1.1046 1.1600 9.5554 19 14 -1.4360 0.7034 10.5639 20 1 -1.8859 -0.6864 10.8314 21 1 -0.9109 1.3039 11.8164 22 1 -2.5828 1.5088 10.0723 23 6 0.5063 -0.3681 5.6847 24 6 1.6051 0.3618 4.8856 25 1 1.2842 1.3660 4.6084 26 6 2.0400 -0.7212 -1.2492 27 6 1.9054 0.2021 -2.4619 28 6 2.7325 1.4687 -2.2327 29 6 2.4147 -0.5194 -3.7112 30 6 0.4354 0.5807 -2.6539 31 1 -0.3633 -0.9953 -0.2559 32 1 -0.3633 0.2760 0.9899 33 1 -0.3634 0.7193 -0.7340 34 1 1.6054 -1.7199 1.2950 35 1 3.1264 -0.7995 1.2056 36 1 2.1169 -2.4158 4.2734 37 1 3.1134 -1.9626 2.8630 38 1 4.4853 -2.2686 4.9626 39 1 4.5933 -0.6150 4.3059 40 1 2.4978 0.0888 8.0415 41 1 1.9777 1.7061 7.4904 42 1 1.2840 1.5223 10.4371 43 1 -0.4785 -0.1289 5.2834 44 1 0.6731 -1.4451 5.6643 45 1 1.4518 -1.6241 -1.4131 46 1 3.0874 -0.9898 -1.1116 47 1 3.7797 1.1990 -2.0960 48 1 2.6362 2.1267 -3.0964 49 1 2.3705 1.9831 -1.3425 50 1 1.8262 -1.4221 -3.8748 51 1 2.3192 0.1386 -4.5750 52 1 3.4621 -0.7882 -3.5739 53 1 0.1849 1.4110 -1.9937 54 1 0.2689 0.8769 -3.6895 55 1 -0.1946 -0.2762 -2.4153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218671598.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:33:32 Heat of formation + Delta-G solvation = -74.934894 kcal Electronic energy + Delta-G solvation = -31501.395285 eV Core-core repulsion = 27538.328179 eV Total energy + Delta-G solvation = -3963.067106 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.86310 -40.25072 -39.07031 -37.53650 -35.96429 -34.86783 -34.14130 -31.48946 -30.08775 -29.23675 -28.95209 -28.12559 -27.87130 -27.01002 -26.18797 -24.45706 -22.69016 -22.18422 -21.04714 -19.72617 -19.53937 -19.06654 -18.31466 -17.85682 -17.06224 -16.96275 -16.36502 -16.21670 -16.11136 -15.64994 -15.50518 -15.21591 -14.96440 -14.89242 -14.58985 -14.39795 -14.21911 -13.89628 -13.71416 -13.53736 -13.47260 -13.08163 -13.00367 -12.79490 -12.69158 -12.67499 -12.59854 -12.51632 -12.43370 -12.29644 -12.13709 -12.11815 -11.83905 -11.66372 -11.53145 -11.42187 -11.32829 -11.15256 -11.09466 -10.99670 -10.77987 -10.52394 -9.56526 -8.96363 -7.89053 -5.26540 1.44343 1.48670 1.54898 1.62615 1.83440 2.47899 2.81330 3.30026 3.43421 3.51790 3.63578 3.76227 3.86542 3.94609 4.00322 4.05207 4.10911 4.16870 4.20846 4.29641 4.32716 4.38286 4.46140 4.54372 4.67558 4.70492 4.74006 4.75703 4.79248 4.81355 4.86215 4.89753 4.93068 4.96583 4.97798 5.04766 5.10795 5.15405 5.19044 5.22663 5.28677 5.35733 5.38457 5.44371 5.48498 5.55361 5.57763 5.63009 5.63846 5.70387 6.13087 6.36552 6.41561 7.04719 7.18136 7.69116 8.32729 9.21222 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.002482 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.938717 B =11279.068349 C =12021.680284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.075 4.075 3 H 0.065 0.935 4 C -0.127 4.127 5 C 0.506 3.494 6 O -0.578 6.578 7 N -0.602 5.602 8 C 0.070 3.930 9 C 0.038 3.962 10 O -0.392 6.392 11 C 0.076 3.924 12 H 0.086 0.914 13 C 0.199 3.801 14 N -0.620 5.620 15 C -0.249 4.249 16 H 0.081 0.919 17 C -0.063 4.063 18 N -0.950 5.950 19 Si 0.985 3.015 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.277 1.277 23 C 0.140 3.860 24 C 0.116 3.884 25 H 0.085 0.915 26 C -0.097 4.097 27 C -0.069 4.069 28 C -0.145 4.145 29 C -0.137 4.137 30 C -0.147 4.147 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.065 0.935 40 H 0.024 0.976 41 H 0.026 0.974 42 H 0.250 0.750 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.046 0.954 50 H 0.058 0.942 51 H 0.053 0.947 52 H 0.059 0.941 53 H 0.051 0.949 54 H 0.051 0.949 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 -7.829 -26.759 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.094 4.094 3 H 0.083 0.917 4 C -0.166 4.166 5 C 0.297 3.703 6 O -0.457 6.457 7 N -0.335 5.335 8 C -0.051 4.051 9 C -0.038 4.038 10 O -0.311 6.311 11 C 0.016 3.984 12 H 0.103 0.897 13 C 0.073 3.927 14 N -0.347 5.347 15 C -0.377 4.377 16 H 0.099 0.901 17 C -0.256 4.256 18 N -0.598 5.598 19 Si 0.812 3.188 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.203 1.203 23 C 0.013 3.987 24 C 0.010 3.990 25 H 0.104 0.896 26 C -0.134 4.134 27 C -0.069 4.069 28 C -0.203 4.203 29 C -0.195 4.195 30 C -0.204 4.204 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.093 0.907 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.077 0.923 51 H 0.072 0.928 52 H 0.079 0.921 53 H 0.070 0.930 54 H 0.070 0.930 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.546 -7.342 -26.446 28.464 hybrid contribution -0.925 0.637 1.205 1.648 sum 6.621 -6.704 -25.240 26.942 Atomic orbital electron populations 1.22386 0.95980 1.01994 1.01670 1.20957 0.95741 0.99685 0.92980 0.91697 1.21899 1.04445 1.00334 0.89906 1.21700 0.78064 0.85452 0.85098 1.90672 1.41514 1.26865 1.86675 1.47799 1.55704 1.25221 1.04797 1.22836 0.93586 0.85063 1.03632 1.23280 0.94794 1.00922 0.84836 1.87885 1.74539 1.36007 1.32630 1.23528 0.92306 0.86536 0.95994 0.89685 1.20845 0.83680 0.96635 0.91540 1.44369 1.09292 1.71857 1.09186 1.19383 0.91814 1.34858 0.91681 0.90114 1.25714 0.99507 1.00733 0.99657 1.70144 1.21622 1.46719 1.21353 0.85069 0.77960 0.77960 0.77807 1.20121 1.21647 1.20321 1.21647 0.96273 0.96048 0.84710 1.21790 0.95390 0.96415 0.85452 0.89647 1.21734 1.01907 0.97719 0.92035 1.20531 0.95264 0.95480 0.95603 1.21990 0.99979 0.97207 1.01083 1.21855 1.01215 1.00142 0.96250 1.22263 0.95918 1.01331 1.00926 0.92267 0.94955 0.91051 0.86675 0.85923 0.90721 0.84094 0.84938 0.91688 0.95748 0.95636 0.94052 0.95119 0.95349 0.90884 0.90433 0.92137 0.92857 0.93505 0.92305 0.92820 0.92144 0.93007 0.92956 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 7.65 71.98 0.55 -2.85 16 2 C -0.07 -1.29 1.82 -10.80 -0.02 -1.31 16 3 H 0.06 1.39 5.53 -2.39 -0.01 1.38 16 4 C -0.13 -2.02 3.48 29.85 0.10 -1.91 16 5 C 0.51 13.94 7.25 87.66 0.64 14.58 16 6 O -0.58 -21.24 13.50 -3.05 -0.04 -21.28 16 7 N -0.60 -17.26 2.76 -793.29 -2.19 -19.45 16 8 C 0.07 1.40 6.26 86.47 0.54 1.94 16 9 C 0.04 0.85 7.02 72.17 0.51 1.36 16 10 O -0.39 -14.18 9.98 -148.98 -1.49 -15.67 16 11 C 0.08 3.03 4.00 31.61 0.13 3.15 16 12 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 13 C 0.20 10.42 5.00 87.13 0.44 10.86 16 14 N -0.62 -34.05 3.37 -694.31 -2.34 -36.39 16 15 C -0.25 -14.64 10.28 84.03 0.86 -13.77 16 16 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16 17 C -0.06 -3.70 5.48 84.86 0.47 -3.23 16 18 N -0.95 -58.54 10.29 21.65 0.22 -58.32 16 19 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 C 0.14 6.34 6.80 86.58 0.59 6.93 16 24 C 0.12 4.50 3.20 45.95 0.15 4.65 16 25 H 0.09 3.73 7.08 -2.39 -0.02 3.71 16 26 C -0.10 -1.11 3.87 30.59 0.12 -0.99 16 27 C -0.07 -0.84 0.80 -52.18 -0.04 -0.88 16 28 C -0.15 -2.00 8.06 71.98 0.58 -1.42 16 29 C -0.14 -1.34 8.36 71.98 0.60 -0.74 16 30 C -0.15 -2.04 7.01 71.98 0.50 -1.54 16 31 H 0.06 1.02 7.78 -2.39 -0.02 1.01 16 32 H 0.03 0.91 5.84 -2.39 -0.01 0.90 16 33 H 0.07 1.43 4.43 -2.39 -0.01 1.42 16 34 H 0.12 1.37 8.00 -2.39 -0.02 1.35 16 35 H 0.12 1.21 7.50 -2.39 -0.02 1.19 16 36 H 0.07 1.62 7.60 -2.38 -0.02 1.60 16 37 H 0.14 1.38 5.95 -2.38 -0.01 1.37 16 38 H 0.13 2.10 8.14 -2.39 -0.02 2.09 16 39 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.02 1.45 7.31 -2.39 -0.02 1.43 16 41 H 0.03 1.48 7.41 -2.39 -0.02 1.46 16 42 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.03 1.27 7.34 -2.39 -0.02 1.25 16 45 H 0.07 0.74 7.80 -2.38 -0.02 0.72 16 46 H 0.08 0.68 7.96 -2.39 -0.02 0.66 16 47 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 48 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.05 0.80 6.08 -2.39 -0.01 0.78 16 50 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.05 0.53 8.12 -2.38 -0.02 0.51 16 52 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 53 H 0.05 0.86 5.99 -2.39 -0.01 0.85 16 54 H 0.05 0.66 7.93 -2.39 -0.02 0.64 16 55 H 0.06 0.82 6.85 -2.39 -0.02 0.80 16 Total: -1.00 -76.13 400.89 3.76 -72.37 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.86 Total: 14.86 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.71 Total: 14.83 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -4.30 Total: -114.15 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.53 Total: -36.95 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -76.13 3.76 -72.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218671598.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.567 kcal (2) G-P(sol) polarization free energy of solvation -76.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds