Wall clock time and date at job start Sat Apr 11 2020 05:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09010 * 109.46774 * 2 1 4 4 O 1.42901 * 109.47128 * 119.99615 * 2 1 3 5 5 C 1.42901 * 113.99881 * 270.00155 * 4 2 1 6 6 C 1.54249 * 108.89732 * 272.88357 * 5 4 2 7 7 C 1.50470 * 108.52365 * 159.26726 * 6 5 4 8 8 C 1.54060 * 112.50428 * 94.15266 * 7 6 5 9 9 C 1.54075 * 112.81550 * 318.28289 * 8 7 6 10 10 C 1.50473 * 112.48997 * 318.28334 * 9 8 7 11 11 C 1.45542 * 108.89656 * 149.99994 * 5 4 2 12 12 C 1.50700 * 109.47470 * 239.99997 * 2 1 3 13 13 O 1.21274 * 119.99687 * 245.00015 * 12 2 1 14 14 N 1.34771 * 119.99800 * 64.99420 * 12 2 1 15 15 C 1.46504 * 119.99732 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.47209 * 180.02562 * 15 14 12 17 17 H 1.09008 * 112.84818 * 316.19306 * 16 15 14 18 18 C 1.53772 * 113.69440 * 87.46099 * 16 15 14 19 19 C 1.53786 * 87.08149 * 139.99527 * 18 16 15 20 20 H 1.08994 * 113.69163 * 89.12703 * 19 18 16 21 21 N 1.46505 * 113.61353 * 220.02147 * 19 18 16 22 22 C 1.36931 * 119.99788 * 252.49526 * 21 19 18 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 19 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 C 1.53778 * 113.61540 * 185.00360 * 16 15 14 31 31 H 1.09003 * 109.47628 * 299.99898 * 1 2 3 32 32 H 1.08996 * 109.47511 * 60.00583 * 1 2 3 33 33 H 1.08998 * 109.47108 * 180.02562 * 1 2 3 34 34 H 1.09000 * 108.87661 * 31.39891 * 5 4 2 35 35 H 1.08999 * 109.62542 * 278.97926 * 6 5 4 36 36 H 1.08994 * 109.62298 * 39.55290 * 6 5 4 37 37 H 1.09000 * 108.87903 * 333.37032 * 7 6 5 38 38 H 1.09005 * 108.79844 * 214.87783 * 7 6 5 39 39 H 1.08996 * 108.81926 * 197.42555 * 8 7 6 40 40 H 1.09001 * 108.73146 * 79.07382 * 8 7 6 41 41 H 1.09000 * 108.88004 * 197.50549 * 9 8 7 42 42 H 1.08994 * 108.87462 * 79.05567 * 9 8 7 43 43 H 1.09000 * 109.63308 * 334.44395 * 10 9 8 44 44 H 1.09005 * 109.62573 * 213.85842 * 10 9 8 45 45 H 1.09004 * 108.89609 * 303.44825 * 11 5 4 46 46 H 1.09007 * 108.89401 * 62.02677 * 11 5 4 47 47 H 0.97004 * 120.00308 * 0.02562 * 14 12 2 48 48 H 1.08992 * 109.47301 * 60.00229 * 15 14 12 49 49 H 1.09001 * 109.46912 * 299.99828 * 15 14 12 50 50 H 1.09001 * 113.61497 * 25.44866 * 18 16 15 51 51 H 1.09002 * 113.61585 * 254.54236 * 18 16 15 52 52 H 0.97000 * 119.99792 * 72.49320 * 21 19 18 53 53 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 54 54 H 1.08994 * 113.61872 * 105.38401 * 30 16 15 55 55 H 1.08999 * 113.61280 * 334.47679 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1831 2.2941 6 6 3.6195 0.7830 2.2276 7 6 3.6527 2.0274 3.0728 8 6 4.1454 1.7534 4.5066 9 6 3.5621 0.4573 5.1013 10 6 2.1020 0.2836 4.7819 11 6 1.9779 -0.5826 3.5117 12 6 2.0324 -0.7104 -1.2304 13 8 2.6530 -1.7466 -1.1214 14 7 1.7919 -0.1942 -2.4519 15 6 2.2798 -0.8851 -3.6481 16 6 1.8757 -0.0947 -4.8942 17 1 0.8456 0.2599 -4.8549 18 6 2.8870 0.9937 -5.2906 19 6 2.6345 0.5857 -6.7516 20 1 1.8124 1.1256 -7.2213 21 7 3.8470 0.5679 -7.5739 22 6 4.0510 1.5424 -8.5140 23 1 3.3183 2.3243 -8.6490 24 6 5.2025 1.5288 -9.2891 25 7 5.4012 2.4685 -10.1890 26 14 6.4700 0.1768 -9.0551 27 1 6.1505 -0.9621 -9.9529 28 1 7.8200 0.7018 -9.3826 29 1 6.4472 -0.2842 -7.6436 30 6 2.2348 -0.7984 -6.2135 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.4731 0.9941 2.2497 35 1 4.3405 0.0608 2.6106 36 1 3.8625 1.0348 1.1953 37 1 2.6486 2.4489 3.1195 38 1 4.3176 2.7528 2.6040 39 1 3.8601 2.5914 5.1425 40 1 5.2326 1.6762 4.4943 41 1 3.6861 0.4790 6.1840 42 1 4.1141 -0.3935 4.7020 43 1 1.6470 1.2584 4.6061 44 1 1.6017 -0.2126 5.6136 45 1 0.9793 -1.0183 3.4775 46 1 2.7119 -1.3870 3.5616 47 1 1.2957 0.6348 -2.5391 48 1 1.8449 -1.8835 -3.6939 49 1 3.3661 -0.9636 -3.6046 50 1 3.9024 0.7911 -4.9499 51 1 2.5546 2.0050 -5.0560 52 1 4.5052 -0.1342 -7.4523 53 1 6.2056 2.4589 -10.7309 54 1 1.3760 -1.2339 -6.7240 55 1 3.0719 -1.4909 -6.1251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263843555.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:33:47 Heat of formation + Delta-G solvation = -94.329471 kcal Electronic energy + Delta-G solvation = -29616.196787 eV Core-core repulsion = 25652.288668 eV Total energy + Delta-G solvation = -3963.908118 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.30563 -40.42630 -39.75412 -37.70782 -36.12982 -35.08586 -33.40896 -33.02819 -32.65025 -31.34864 -28.77948 -26.46998 -26.18497 -25.68396 -25.27258 -24.38772 -22.39820 -21.74794 -21.51691 -20.69101 -20.16587 -19.35789 -18.37010 -18.33084 -17.05944 -16.88277 -16.66095 -16.39502 -16.07235 -15.87719 -15.71891 -15.50205 -15.03257 -14.88738 -14.63865 -14.43707 -14.16977 -13.96659 -13.96238 -13.79257 -13.33318 -13.25726 -13.22950 -13.17532 -13.07363 -13.04542 -12.71669 -12.51075 -12.19594 -12.14186 -12.04804 -11.90473 -11.68800 -11.60798 -11.44693 -11.42420 -11.27015 -11.19600 -11.12579 -10.89267 -10.78250 -10.42220 -10.10124 -9.26592 -8.03185 -5.35118 1.37067 1.39010 1.46151 1.56219 1.85153 2.47119 2.84645 3.27230 3.56835 3.59471 3.66825 3.73063 3.81612 3.86634 3.94107 3.99636 4.07621 4.10233 4.17009 4.21403 4.28212 4.29787 4.36844 4.38374 4.41465 4.51795 4.55154 4.66163 4.74058 4.80095 4.89186 4.94674 4.95365 4.95628 4.97496 5.03522 5.10330 5.19036 5.21328 5.22122 5.25612 5.29905 5.31021 5.32743 5.33502 5.42512 5.43997 5.55936 5.66362 5.78209 6.17536 6.22950 6.57049 7.07808 7.22688 7.86566 8.03781 9.18266 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016815 B = 0.001864 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.801692 B =15019.928388 C =15862.948252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.072 3.928 3 H 0.109 0.891 4 O -0.385 6.385 5 C 0.095 3.905 6 C -0.140 4.140 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.124 4.124 10 C -0.104 4.104 11 C -0.121 4.121 12 C 0.506 3.494 13 O -0.578 6.578 14 N -0.709 5.709 15 C 0.138 3.862 16 C -0.095 4.095 17 H 0.124 0.876 18 C -0.155 4.155 19 C 0.145 3.855 20 H 0.081 0.919 21 N -0.745 5.745 22 C -0.230 4.230 23 H 0.061 0.939 24 C -0.066 4.066 25 N -0.983 5.983 26 Si 0.952 3.048 27 H -0.278 1.278 28 H -0.297 1.297 29 H -0.256 1.256 30 C -0.137 4.137 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.417 0.583 48 H 0.065 0.935 49 H 0.047 0.953 50 H 0.061 0.939 51 H 0.068 0.932 52 H 0.364 0.636 53 H 0.257 0.743 54 H 0.083 0.917 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.143 -2.319 33.977 36.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.011 3.989 3 H 0.126 0.874 4 O -0.304 6.304 5 C 0.038 3.962 6 C -0.177 4.177 7 C -0.153 4.153 8 C -0.155 4.155 9 C -0.161 4.161 10 C -0.141 4.141 11 C -0.159 4.159 12 C 0.292 3.708 13 O -0.457 6.457 14 N -0.363 5.363 15 C 0.014 3.986 16 C -0.114 4.114 17 H 0.142 0.858 18 C -0.195 4.195 19 C 0.036 3.964 20 H 0.099 0.901 21 N -0.386 5.386 22 C -0.361 4.361 23 H 0.079 0.921 24 C -0.257 4.257 25 N -0.634 5.634 26 Si 0.780 3.220 27 H -0.205 1.205 28 H -0.224 1.224 29 H -0.181 1.181 30 C -0.177 4.177 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.255 0.745 48 H 0.084 0.916 49 H 0.065 0.935 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.197 0.803 53 H 0.066 0.934 54 H 0.102 0.898 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.698 -3.068 33.916 36.345 hybrid contribution 1.267 -0.172 -0.687 1.452 sum -11.430 -3.240 33.229 35.290 Atomic orbital electron populations 1.22239 0.91356 1.03440 1.05100 1.22024 0.96436 0.96527 0.83952 0.87375 1.88104 1.86592 1.35895 1.19822 1.21272 0.96143 0.93020 0.85789 1.21860 0.97524 0.98400 0.99962 1.21264 1.02488 0.96454 0.95103 1.21924 1.00102 0.97939 0.95526 1.21391 0.96118 0.97712 1.00885 1.21214 0.96745 1.00259 0.95876 1.20542 1.02579 0.99073 0.93662 1.21077 0.78994 0.85093 0.85594 1.90699 1.41913 1.25804 1.87273 1.45830 1.57522 1.28214 1.04698 1.21247 0.98371 0.95899 0.83084 1.22472 1.00633 0.96380 0.91918 0.85821 1.23738 0.98477 0.98829 0.98483 1.21956 0.88470 0.96455 0.89499 0.90117 1.42816 1.22458 1.30612 1.42689 1.19142 1.03342 1.03716 1.09917 0.92080 1.25486 1.00648 1.00885 0.98707 1.69872 1.29032 1.37133 1.27366 0.85453 0.78550 0.79333 0.78687 1.20458 1.22418 1.18093 1.23366 1.01637 0.97034 0.95632 0.89418 0.88687 0.92660 0.90343 0.92342 0.92742 0.90735 0.91887 0.91011 0.92762 0.91273 0.93240 0.90370 0.90331 0.91241 0.92853 0.74527 0.91647 0.93462 0.92029 0.91295 0.80281 0.93437 0.89839 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.46 71.98 0.68 -1.07 16 2 C 0.07 1.20 2.76 29.85 0.08 1.28 16 3 H 0.11 1.27 7.46 -2.38 -0.02 1.26 16 4 O -0.38 -8.33 9.08 -129.99 -1.18 -9.51 16 5 C 0.09 1.39 1.92 28.74 0.06 1.44 16 6 C -0.14 -2.16 5.16 30.20 0.16 -2.01 16 7 C -0.12 -1.25 5.31 30.13 0.16 -1.09 16 8 C -0.12 -1.15 5.85 31.32 0.18 -0.97 16 9 C -0.12 -1.23 5.31 30.14 0.16 -1.07 16 10 C -0.10 -0.92 5.61 30.20 0.17 -0.75 16 11 C -0.12 -1.63 4.82 28.74 0.14 -1.49 16 12 C 0.51 12.14 7.18 87.66 0.63 12.77 16 13 O -0.58 -20.31 16.51 15.98 0.26 -20.05 16 14 N -0.71 -13.20 5.52 -463.07 -2.55 -15.75 16 15 C 0.14 3.11 5.51 86.38 0.48 3.58 16 16 C -0.10 -2.01 3.75 -10.27 -0.04 -2.05 16 17 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 18 C -0.15 -4.42 7.43 31.12 0.23 -4.19 16 19 C 0.14 5.04 4.48 45.52 0.20 5.25 16 20 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 21 N -0.74 -34.13 5.21 -320.43 -1.67 -35.79 16 22 C -0.23 -12.98 10.45 84.04 0.88 -12.10 16 23 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 24 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 25 N -0.98 -63.13 13.97 21.65 0.30 -62.82 16 26 Si 0.95 46.11 27.74 68.60 1.90 48.01 16 27 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 28 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 29 H -0.26 -11.36 6.51 99.48 0.65 -10.71 16 30 C -0.14 -3.64 7.39 31.12 0.23 -3.41 16 31 H 0.09 0.63 7.90 -2.39 -0.02 0.61 16 32 H 0.09 0.58 7.92 -2.39 -0.02 0.56 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.80 6.86 -2.39 -0.02 0.78 16 35 H 0.06 1.08 6.98 -2.39 -0.02 1.06 16 36 H 0.05 0.97 7.67 -2.39 -0.02 0.95 16 37 H 0.07 0.61 6.63 -2.39 -0.02 0.59 16 38 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.05 0.64 6.63 -2.39 -0.02 0.62 16 43 H 0.08 0.54 6.98 -2.39 -0.02 0.52 16 44 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 45 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.05 0.91 7.46 -2.38 -0.02 0.90 16 47 H 0.42 4.81 8.26 -92.70 -0.77 4.05 16 48 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.05 1.30 7.85 -2.39 -0.02 1.28 16 50 H 0.06 1.98 7.90 -2.39 -0.02 1.96 16 51 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 52 H 0.36 16.31 5.78 -92.71 -0.54 15.77 16 53 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 54 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 55 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 Total: -1.00 -77.55 421.05 1.43 -76.12 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -0.50 Total: 29.09 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 4.86 Total: -9.29 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -3.92 Total: -114.37 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.92 Total: -29.56 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.01 kcal Total: -77.55 1.43 -76.12 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263843555.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.209 kcal (2) G-P(sol) polarization free energy of solvation -77.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds