Wall clock time and date at job start Sat Apr 11 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.46440 * 2 1 4 4 N 1.46501 * 109.47339 * 119.99518 * 2 1 3 5 5 C 1.34776 * 120.00111 * 275.00981 * 4 2 1 6 6 O 1.21283 * 119.99923 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99914 * 179.97438 * 5 4 2 8 8 O 1.42898 * 109.47008 * 179.97438 * 7 5 4 9 9 C 1.42904 * 113.99911 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47225 * 180.02562 * 9 8 7 11 11 C 1.54266 * 110.02682 * 292.90506 * 10 9 8 12 12 C 1.54969 * 104.15873 * 217.13904 * 11 10 9 13 13 C 1.54884 * 102.78029 * 37.88640 * 12 11 10 14 14 C 1.53874 * 110.03296 * 175.68882 * 10 9 8 15 15 C 1.52995 * 109.47343 * 240.00177 * 2 1 3 16 16 H 1.09003 * 109.49512 * 300.05802 * 15 2 1 17 17 C 1.53042 * 109.50002 * 60.16150 * 15 2 1 18 18 C 1.53349 * 109.60630 * 181.32728 * 17 15 2 19 19 C 1.53194 * 109.14918 * 298.70887 * 18 17 15 20 20 N 1.46934 * 108.89214 * 54.57866 * 19 18 17 21 21 C 1.36935 * 120.62776 * 126.34278 * 20 19 18 22 22 H 1.08003 * 120.00334 * 331.82288 * 21 20 19 23 23 C 1.38816 * 120.00109 * 151.82327 * 21 20 19 24 24 N 1.31624 * 119.99356 * 343.07479 * 23 21 20 25 25 Si 1.86793 * 120.00395 * 163.07501 * 23 21 20 26 26 H 1.48500 * 109.47341 * 59.99642 * 25 23 21 27 27 H 1.48504 * 109.47235 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46651 * 299.99824 * 25 23 21 29 29 C 1.46917 * 118.73910 * 306.32295 * 20 19 18 30 30 H 1.08995 * 109.47544 * 299.99927 * 1 2 3 31 31 H 1.09002 * 109.47038 * 60.00132 * 1 2 3 32 32 H 1.09002 * 109.46854 * 179.97438 * 1 2 3 33 33 H 0.96995 * 119.99689 * 94.99483 * 4 2 1 34 34 H 1.09002 * 109.47077 * 299.99197 * 7 5 4 35 35 H 1.08997 * 109.47450 * 59.99183 * 7 5 4 36 36 H 1.09000 * 109.46745 * 299.99612 * 9 8 7 37 37 H 1.08996 * 109.47660 * 59.99758 * 9 8 7 38 38 H 1.08995 * 110.02074 * 54.29262 * 10 9 8 39 39 H 1.08998 * 110.49172 * 335.78162 * 11 10 9 40 40 H 1.09001 * 110.48707 * 98.43202 * 11 10 9 41 41 H 1.09004 * 110.71841 * 279.57144 * 12 11 10 42 42 H 1.08996 * 110.92098 * 156.29956 * 12 11 10 43 43 H 1.08999 * 110.48842 * 203.40894 * 13 12 11 44 44 H 1.09000 * 110.48480 * 80.76028 * 13 12 11 45 45 H 1.09002 * 110.03415 * 238.56440 * 14 10 9 46 46 H 1.08995 * 110.03490 * 359.97438 * 14 10 9 47 47 H 1.09004 * 109.45660 * 301.33597 * 17 15 2 48 48 H 1.08991 * 109.45872 * 61.31255 * 17 15 2 49 49 H 1.08996 * 109.68610 * 178.74914 * 18 17 15 50 50 H 1.09002 * 109.47692 * 58.54633 * 18 17 15 51 51 H 1.09003 * 109.58905 * 294.72177 * 19 18 17 52 52 H 1.09001 * 109.58865 * 174.43764 * 19 18 17 53 53 H 0.96997 * 119.99488 * 180.02562 * 24 23 21 54 54 H 1.09003 * 109.58812 * 173.39821 * 29 20 19 55 55 H 1.09007 * 109.58397 * 293.82038 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1469 -0.0181 2.3572 6 8 1.8587 1.1587 2.4115 7 6 2.6487 -0.7286 3.5878 8 8 2.6973 0.1898 4.6815 9 6 3.1619 -0.3862 5.9040 10 6 3.1720 0.6817 6.9996 11 6 4.2366 1.7526 6.6837 12 6 4.8232 2.1241 8.0691 13 6 4.8590 0.7606 8.8029 14 6 3.5672 0.0514 8.3465 15 6 2.0400 -0.7212 -1.2492 16 1 1.6760 -1.7486 -1.2502 17 6 1.5336 0.0021 -2.4992 18 6 2.0159 -0.7378 -3.7528 19 6 3.5476 -0.7379 -3.7781 20 7 4.0443 -1.3004 -2.5148 21 6 4.9309 -2.3440 -2.5166 22 1 4.9362 -3.0467 -3.3367 23 6 5.8229 -2.4987 -1.4643 24 7 6.0565 -1.4941 -0.6466 25 14 6.6917 -4.1324 -1.2088 26 1 7.4974 -4.4583 -2.4129 27 1 7.5844 -4.0387 -0.0257 28 1 5.6834 -5.1993 -0.9842 29 6 3.5720 -0.7215 -1.2498 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6316 1.1527 34 1 1.9758 -1.5504 3.8327 35 1 3.6478 -1.1211 3.3987 36 1 2.4991 -1.2004 6.1969 37 1 4.1714 -0.7723 5.7632 38 1 2.1885 1.1449 7.0783 39 1 5.0129 1.3404 6.0391 40 1 3.7752 2.6234 6.2180 41 1 4.1704 2.8255 8.5888 42 1 5.8276 2.5354 7.9689 43 1 4.8520 0.9082 9.8828 44 1 5.7357 0.1877 8.5008 45 1 2.7757 0.2093 9.0792 46 1 3.7513 -1.0154 8.2198 47 1 0.4438 0.0253 -2.4889 48 1 1.9184 1.0218 -2.5097 49 1 1.6375 -0.2364 -4.6435 50 1 1.6524 -1.7652 -3.7308 51 1 3.9113 0.2834 -3.8913 52 1 3.8993 -1.3456 -4.6119 53 1 6.6801 -1.6021 0.0885 54 1 3.9376 -1.3197 -0.4151 55 1 3.9376 0.3012 -1.1569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265702458.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:34:22 Heat of formation + Delta-G solvation = -108.348002 kcal Electronic energy + Delta-G solvation = -30544.903651 eV Core-core repulsion = 26580.387643 eV Total energy + Delta-G solvation = -3964.516008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -41.07524 -39.82768 -39.27503 -37.82786 -36.54096 -34.81008 -33.01383 -31.72512 -31.38034 -30.21268 -29.58895 -28.49710 -27.05632 -25.27211 -24.68381 -23.70051 -22.13756 -21.56425 -21.49443 -20.75236 -20.44629 -18.69712 -18.30232 -17.82234 -17.39259 -16.87554 -16.81882 -16.30757 -16.06036 -15.83592 -15.61608 -15.27712 -15.02597 -14.92119 -14.65706 -14.32731 -14.22919 -14.08156 -14.02340 -13.68517 -13.48042 -13.28244 -12.94156 -12.82817 -12.71473 -12.56487 -12.34680 -12.17280 -12.14389 -11.99656 -11.98286 -11.92308 -11.72675 -11.69716 -11.51237 -11.49372 -11.34151 -11.25006 -11.07377 -10.75755 -10.66745 -10.52987 -10.02277 -8.65153 -7.84354 -5.31292 1.49043 1.49100 1.57117 1.59414 1.87172 2.52548 2.96923 3.27195 3.56881 3.67576 3.69756 3.76487 3.89413 3.98056 4.07841 4.13292 4.16376 4.23636 4.30316 4.34771 4.39160 4.45134 4.48519 4.50894 4.55324 4.66693 4.68088 4.74242 4.77947 4.83385 4.86536 4.88567 4.89730 5.02023 5.04671 5.06243 5.07638 5.15860 5.20385 5.23176 5.28201 5.32982 5.39423 5.45053 5.46480 5.47661 5.55260 5.59386 5.69284 5.80411 6.08438 6.40684 6.57441 7.16708 7.24754 7.87974 8.40960 9.20473 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.002809 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.057299 B = 9967.225680 C =11865.226275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 H 0.053 0.947 4 N -0.708 5.708 5 C 0.511 3.489 6 O -0.575 6.575 7 C 0.047 3.953 8 O -0.392 6.392 9 C 0.062 3.938 10 C -0.091 4.091 11 C -0.121 4.121 12 C -0.125 4.125 13 C -0.123 4.123 14 C -0.112 4.112 15 C -0.104 4.104 16 H 0.076 0.924 17 C -0.101 4.101 18 C -0.121 4.121 19 C 0.134 3.866 20 N -0.611 5.611 21 C -0.264 4.264 22 H 0.065 0.935 23 C -0.047 4.047 24 N -0.932 5.932 25 Si 0.965 3.035 26 H -0.281 1.281 27 H -0.295 1.295 28 H -0.272 1.272 29 C 0.191 3.809 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.410 0.590 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.046 0.954 49 H 0.082 0.918 50 H 0.061 0.939 51 H 0.004 0.996 52 H 0.051 0.949 53 H 0.249 0.751 54 H 0.066 0.934 55 H -0.027 1.027 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.039 -0.715 13.837 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.051 3.949 3 H 0.071 0.929 4 N -0.361 5.361 5 C 0.298 3.702 6 O -0.454 6.454 7 C -0.032 4.032 8 O -0.311 6.311 9 C -0.014 4.014 10 C -0.110 4.110 11 C -0.158 4.158 12 C -0.163 4.163 13 C -0.160 4.160 14 C -0.150 4.150 15 C -0.124 4.124 16 H 0.094 0.906 17 C -0.139 4.139 18 C -0.160 4.160 19 C 0.009 3.991 20 N -0.334 5.334 21 C -0.394 4.394 22 H 0.083 0.917 23 C -0.242 4.242 24 N -0.578 5.578 25 Si 0.793 3.207 26 H -0.207 1.207 27 H -0.222 1.222 28 H -0.198 1.198 29 C 0.066 3.934 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.246 0.754 34 H 0.130 0.870 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.101 0.899 50 H 0.080 0.920 51 H 0.022 0.978 52 H 0.070 0.930 53 H 0.058 0.942 54 H 0.084 0.916 55 H -0.009 1.009 Dipole moment (debyes) X Y Z Total from point charges -10.173 0.312 13.969 17.284 hybrid contribution 1.320 -0.995 -0.111 1.657 sum -8.853 -0.682 13.858 16.459 Atomic orbital electron populations 1.22108 0.93261 1.02985 1.02378 1.20879 0.94950 0.95724 0.83375 0.92869 1.45909 1.66600 1.14587 1.08955 1.20751 0.77167 0.87030 0.85280 1.90660 1.51406 1.17655 1.85678 1.22248 1.02869 0.92523 0.85555 1.87971 1.87560 1.36806 1.18722 1.22949 0.98871 0.96387 0.83227 1.21788 0.99779 0.95440 0.93969 1.22386 0.97647 0.98160 0.97634 1.22541 1.00913 0.97886 0.94920 1.22374 0.97593 0.95544 1.00531 1.22124 0.98214 1.00188 0.94453 1.21916 0.97234 0.99572 0.93692 0.90583 1.21524 1.00934 0.98056 0.93366 1.21928 0.95477 1.00639 0.97939 1.21128 0.94141 0.95312 0.88562 1.44344 1.50076 1.37924 1.01079 1.19464 1.10578 1.02223 1.07121 0.91730 1.25770 0.98066 1.00266 1.00110 1.70224 1.37619 1.30633 1.19289 0.85387 0.78131 0.80303 0.76868 1.20737 1.22152 1.19798 1.20538 0.89706 0.93973 0.89226 0.93640 0.89841 0.90900 0.75428 0.87015 0.89447 0.91192 0.92707 0.90992 0.92811 0.93233 0.91030 0.91417 0.90165 0.91614 0.90253 0.90605 0.89394 0.93542 0.89903 0.92038 0.97810 0.93016 0.94243 0.91597 1.00852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.14 71.98 0.66 -3.17 16 2 C 0.16 5.07 2.16 44.99 0.10 5.17 16 3 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 4 N -0.71 -22.39 4.47 -442.54 -1.98 -24.37 16 5 C 0.51 17.64 7.87 87.66 0.69 18.33 16 6 O -0.57 -24.86 16.16 16.00 0.26 -24.60 16 7 C 0.05 1.28 6.42 71.24 0.46 1.73 16 8 O -0.39 -11.77 9.71 -129.94 -1.26 -13.03 16 9 C 0.06 1.33 4.98 71.98 0.36 1.69 16 10 C -0.09 -1.83 3.19 -10.07 -0.03 -1.87 16 11 C -0.12 -2.73 6.22 31.70 0.20 -2.54 16 12 C -0.13 -2.14 6.91 31.91 0.22 -1.92 16 13 C -0.12 -1.73 6.83 31.67 0.22 -1.51 16 14 C -0.11 -1.60 6.46 31.32 0.20 -1.40 16 15 C -0.10 -3.60 1.98 -10.72 -0.02 -3.62 16 16 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 17 C -0.10 -3.07 4.86 30.73 0.15 -2.92 16 18 C -0.12 -3.79 6.11 30.78 0.19 -3.60 16 19 C 0.13 5.53 6.50 86.36 0.56 6.09 16 20 N -0.61 -30.26 2.99 -699.07 -2.09 -32.35 16 21 C -0.26 -14.19 9.58 84.03 0.81 -13.38 16 22 H 0.07 3.39 7.89 -2.91 -0.02 3.37 16 23 C -0.05 -2.52 4.92 84.86 0.42 -2.11 16 24 N -0.93 -53.96 11.20 21.65 0.24 -53.72 16 25 Si 0.97 43.26 29.59 68.60 2.03 45.29 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.30 -13.34 7.11 99.48 0.71 -12.64 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 29 C 0.19 8.98 4.34 86.37 0.37 9.35 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.86 6.41 -2.39 -0.02 1.84 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.41 11.51 8.42 -92.71 -0.78 10.73 16 34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.13 8.02 -2.39 -0.02 1.11 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.35 7.77 -2.39 -0.02 1.33 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.08 0.94 7.67 -2.39 -0.02 0.92 16 47 H 0.09 2.09 6.37 -2.38 -0.02 2.08 16 48 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 52 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 53 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 54 H 0.07 3.36 5.57 -2.39 -0.01 3.35 16 55 H -0.03 -1.45 8.14 -2.38 -0.02 -1.47 16 Total: -1.00 -71.62 422.38 2.80 -68.83 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.06 Total: 29.62 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.54 Total: 4.34 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -3.83 Total: -110.44 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -1.00 Total: -37.63 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -71.62 2.80 -68.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265702458.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.519 kcal (2) G-P(sol) polarization free energy of solvation -71.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds