Wall clock time and date at job start Sat Apr 11 2020 05:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47147 * 2 1 4 4 C 1.53003 * 109.46932 * 119.99742 * 2 1 3 5 5 C 1.53000 * 109.47024 * 175.00214 * 4 2 1 6 6 O 1.42907 * 109.47118 * 180.02562 * 5 4 2 7 7 C 1.42902 * 113.99814 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.46950 * 30.00223 * 7 6 5 9 9 C 1.52999 * 109.47323 * 269.99907 * 7 6 5 10 10 C 1.50700 * 109.46872 * 150.00021 * 7 6 5 11 11 O 1.21287 * 119.99852 * 10.23221 * 10 7 6 12 12 N 1.34769 * 120.00204 * 190.23312 * 10 7 6 13 13 C 1.46947 * 120.43937 * 355.08933 * 12 10 7 14 14 C 1.53591 * 108.53087 * 125.47603 * 13 12 10 15 15 H 1.08992 * 110.60091 * 172.77327 * 14 13 12 16 16 C 1.53371 * 108.68924 * 294.36679 * 14 13 12 17 17 C 1.53004 * 109.27816 * 60.30909 * 16 14 13 18 18 C 1.53008 * 109.80099 * 60.55700 * 17 16 14 19 19 C 1.53371 * 109.25468 * 299.42387 * 18 17 16 20 20 H 1.09001 * 110.59682 * 178.14398 * 19 18 17 21 21 C 1.46951 * 120.44623 * 174.80770 * 12 10 7 22 22 N 1.47570 * 107.98181 * 56.38472 * 19 18 17 23 23 C 1.36940 * 121.61192 * 122.22684 * 22 19 18 24 24 H 1.07992 * 120.00071 * 209.08509 * 23 22 19 25 25 C 1.38812 * 119.99463 * 29.08121 * 23 22 19 26 26 N 1.31616 * 120.00553 * 19.03041 * 25 23 22 27 27 Si 1.86804 * 119.99486 * 199.02654 * 25 23 22 28 28 H 1.48504 * 109.47101 * 60.00910 * 27 25 23 29 29 H 1.48509 * 109.46856 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47340 * 300.00270 * 27 25 23 31 31 H 1.08994 * 109.47052 * 300.00357 * 1 2 3 32 32 H 1.09003 * 109.46895 * 60.00234 * 1 2 3 33 33 H 1.08997 * 109.47028 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47746 * 239.99743 * 2 1 3 35 35 H 1.09003 * 109.47032 * 299.99683 * 3 2 1 36 36 H 1.09003 * 109.47179 * 59.99774 * 3 2 1 37 37 H 1.08998 * 109.46918 * 179.97438 * 3 2 1 38 38 H 1.08997 * 109.46972 * 55.00146 * 4 2 1 39 39 H 1.09001 * 109.47032 * 295.00084 * 4 2 1 40 40 H 1.08997 * 109.47302 * 60.00134 * 5 4 2 41 41 H 1.09001 * 109.47110 * 299.99822 * 5 4 2 42 42 H 1.09005 * 109.46773 * 59.22943 * 9 7 6 43 43 H 1.08995 * 109.46977 * 179.22510 * 9 7 6 44 44 H 1.08998 * 109.47191 * 299.23044 * 9 7 6 45 45 H 1.09004 * 109.62567 * 245.18267 * 13 12 10 46 46 H 1.08998 * 109.62888 * 5.56948 * 13 12 10 47 47 H 1.08999 * 109.50218 * 180.24878 * 16 14 13 48 48 H 1.09000 * 109.50329 * 300.32615 * 16 14 13 49 49 H 1.08999 * 109.41774 * 180.65935 * 17 16 14 50 50 H 1.09004 * 109.41604 * 300.52891 * 17 16 14 51 51 H 1.08999 * 109.50643 * 59.35888 * 18 17 16 52 52 H 1.09008 * 109.51020 * 179.48707 * 18 17 16 53 53 H 1.08999 * 109.61995 * 354.22176 * 21 12 10 54 54 H 1.08995 * 109.62448 * 114.78162 * 21 12 10 55 55 H 0.96998 * 120.00315 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 8 4.0411 -1.5051 2.3547 7 6 5.4609 -1.6614 2.3966 8 1 5.9333 -0.8342 1.8668 9 6 5.8486 -2.9824 1.7291 10 6 5.9232 -1.6687 3.8310 11 8 5.1115 -1.7389 4.7294 12 7 7.2387 -1.5973 4.1154 13 6 8.2359 -1.6203 3.0364 14 6 9.1380 -0.3854 3.1790 15 1 9.9681 -0.4335 2.4744 16 6 8.2935 0.8711 2.9329 17 6 7.1671 0.9330 3.9665 18 6 7.7597 1.0007 5.3755 19 6 8.6014 -0.2556 5.6311 20 1 9.0614 -0.2147 6.6185 21 6 7.6945 -1.4891 5.5082 22 7 9.6248 -0.3417 4.5714 23 6 10.9616 -0.3788 4.8658 24 1 11.6803 0.0181 4.1642 25 6 11.3929 -0.9264 6.0663 26 7 10.6025 -1.7314 6.7441 27 14 13.0954 -0.5209 6.7195 28 1 13.2076 0.9445 6.9329 29 1 13.3124 -1.2272 8.0077 30 1 14.1196 -0.9580 5.7372 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8935 -0.5138 -0.8899 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6054 -1.7197 1.2952 39 1 1.7516 -0.1582 2.1370 40 1 3.9994 0.1675 1.1422 41 1 3.8532 -1.3940 0.3004 42 1 5.5021 -2.9826 0.6956 43 1 6.9325 -3.0951 1.7489 44 1 5.3873 -3.8105 2.2672 45 1 8.8389 -2.5250 3.1144 46 1 7.7311 -1.5989 2.0706 47 1 8.9225 1.7563 3.0266 48 1 7.8669 0.8322 1.9306 49 1 6.5584 1.8191 3.7864 50 1 6.5452 0.0421 3.8785 51 1 8.3904 1.8854 5.4630 52 1 6.9535 1.0539 6.1074 53 1 6.8337 -1.3777 6.1674 54 1 8.2544 -2.3837 5.7807 55 1 10.9040 -2.1143 7.5827 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269680715.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:35:14 Heat of formation + Delta-G solvation = -60.490489 kcal Electronic energy + Delta-G solvation = -32467.292666 eV Core-core repulsion = 28504.851916 eV Total energy + Delta-G solvation = -3962.440750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.26039 -39.80647 -38.71047 -37.06725 -35.71851 -34.58398 -33.71000 -32.60354 -31.88264 -29.98783 -28.65536 -27.99500 -27.11067 -25.92735 -24.74418 -23.86360 -23.15047 -22.81549 -21.06463 -20.58402 -20.03135 -18.83257 -17.89001 -17.66626 -17.02111 -16.67142 -16.58222 -16.25804 -15.75577 -15.58547 -15.38131 -15.13768 -14.75907 -14.70844 -14.56528 -14.45535 -14.18748 -14.02448 -13.75853 -13.56515 -13.35888 -13.24817 -13.09101 -12.98240 -12.89212 -12.76999 -12.57223 -12.42298 -12.39461 -12.20162 -12.13620 -11.88416 -11.75169 -11.71295 -11.68909 -11.50824 -11.47677 -11.22877 -11.03268 -10.78471 -10.58882 -10.34844 -9.41954 -8.43794 -7.83949 -5.26846 1.48603 1.52186 1.56210 1.57092 1.80814 2.53111 2.81324 3.30989 3.44830 3.51581 3.85342 3.93252 3.99258 4.05259 4.09991 4.13559 4.17089 4.20532 4.23811 4.33947 4.36313 4.46938 4.48596 4.57073 4.59860 4.66834 4.74511 4.79651 4.82700 4.83177 4.85783 4.89132 4.97253 4.97439 5.04381 5.06266 5.10930 5.13406 5.15130 5.20723 5.21870 5.30895 5.33661 5.41955 5.46038 5.47330 5.53010 5.65292 5.67290 5.79707 6.16916 6.40894 6.55864 7.14983 7.18566 7.84797 8.44675 9.21469 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.024203 B = 0.002839 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.624234 B = 9861.418666 C =10115.372845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.153 4.153 4 C -0.112 4.112 5 C 0.052 3.948 6 O -0.387 6.387 7 C 0.078 3.922 8 H 0.110 0.890 9 C -0.172 4.172 10 C 0.509 3.491 11 O -0.582 6.582 12 N -0.587 5.587 13 C 0.092 3.908 14 C 0.143 3.857 15 H 0.092 0.908 16 C -0.115 4.115 17 C -0.138 4.138 18 C -0.126 4.126 19 C 0.184 3.816 20 H 0.070 0.930 21 C 0.124 3.876 22 N -0.592 5.592 23 C -0.255 4.255 24 H 0.069 0.931 25 C -0.041 4.041 26 N -0.922 5.922 27 Si 0.958 3.042 28 H -0.285 1.285 29 H -0.301 1.301 30 H -0.275 1.275 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.117 0.883 47 H 0.051 0.949 48 H 0.088 0.912 49 H 0.049 0.951 50 H 0.080 0.920 51 H 0.046 0.954 52 H 0.041 0.959 53 H 0.055 0.945 54 H 0.053 0.947 55 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.511 3.158 -18.197 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.211 4.211 4 C -0.150 4.150 5 C -0.024 4.024 6 O -0.306 6.306 7 C 0.017 3.983 8 H 0.127 0.873 9 C -0.229 4.229 10 C 0.299 3.701 11 O -0.463 6.463 12 N -0.320 5.320 13 C -0.032 4.032 14 C 0.036 3.964 15 H 0.110 0.890 16 C -0.154 4.154 17 C -0.176 4.176 18 C -0.165 4.165 19 C 0.076 3.924 20 H 0.088 0.912 21 C 0.000 4.000 22 N -0.313 5.313 23 C -0.385 4.385 24 H 0.086 0.914 25 C -0.238 4.238 26 N -0.567 5.567 27 Si 0.787 3.213 28 H -0.212 1.212 29 H -0.227 1.227 30 H -0.201 1.201 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.135 0.865 47 H 0.070 0.930 48 H 0.106 0.894 49 H 0.067 0.933 50 H 0.097 0.903 51 H 0.065 0.935 52 H 0.060 0.940 53 H 0.073 0.927 54 H 0.071 0.929 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.982 2.957 -17.442 22.549 hybrid contribution 1.244 0.059 1.360 1.844 sum -12.739 3.016 -16.081 20.736 Atomic orbital electron populations 1.21829 0.94471 1.02038 1.02090 1.21032 0.96313 0.96296 0.97054 1.21949 1.01328 0.95739 1.02035 1.21575 0.93163 1.01317 0.98899 1.22928 0.95681 0.96391 0.87383 1.88015 1.19355 1.78967 1.44286 1.21970 0.83593 1.01267 0.91502 0.87275 1.22386 1.03375 0.94919 1.02241 1.20860 0.81757 0.75379 0.92081 1.90655 1.53997 1.51691 1.49911 1.48165 1.05149 1.70378 1.08285 1.22667 0.90736 0.99976 0.89802 1.21523 0.95106 0.92638 0.87095 0.89041 1.21912 0.96668 0.98289 0.98484 1.22097 0.98590 1.02210 0.94722 1.21969 0.98098 0.98802 0.97608 1.20778 0.87510 0.90291 0.93808 0.91236 1.21808 0.96436 1.00325 0.81418 1.44478 1.01428 1.85043 1.00398 1.19330 0.83727 1.31824 1.03628 0.91372 1.25635 1.00399 0.97124 1.00635 1.70115 1.38261 1.31832 1.16520 0.85498 0.81260 0.77361 0.77165 1.21187 1.22743 1.20125 0.93180 0.91514 0.92474 0.89842 0.91564 0.93343 0.92320 0.91544 0.92749 0.92275 0.90988 0.88182 0.89337 0.92847 0.92318 0.86498 0.93004 0.89406 0.93259 0.90255 0.93488 0.94009 0.92688 0.92898 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.19 71.98 0.66 -1.09 16 2 C -0.09 -1.14 2.92 -10.79 -0.03 -1.17 16 3 C -0.15 -1.93 8.95 71.98 0.64 -1.29 16 4 C -0.11 -2.01 5.05 30.60 0.15 -1.86 16 5 C 0.05 0.99 5.50 71.98 0.40 1.38 16 6 O -0.39 -10.97 9.54 -130.14 -1.24 -12.21 16 7 C 0.08 2.02 2.17 29.85 0.06 2.09 16 8 H 0.11 2.25 6.91 -2.38 -0.02 2.23 16 9 C -0.17 -3.52 9.12 71.98 0.66 -2.86 16 10 C 0.51 18.61 4.49 87.66 0.39 19.00 16 11 O -0.58 -26.77 15.95 15.79 0.25 -26.52 16 12 N -0.59 -21.74 1.66 -817.26 -1.36 -23.10 16 13 C 0.09 2.85 4.70 86.49 0.41 3.26 16 14 C 0.14 4.96 3.61 45.11 0.16 5.12 16 15 H 0.09 2.96 8.03 -2.39 -0.02 2.94 16 16 C -0.11 -3.41 5.58 30.72 0.17 -3.24 16 17 C -0.14 -4.69 5.55 30.60 0.17 -4.52 16 18 C -0.13 -5.08 5.58 30.72 0.17 -4.91 16 19 C 0.18 8.51 2.62 45.11 0.12 8.63 16 20 H 0.07 3.76 6.13 -2.39 -0.01 3.75 16 21 C 0.12 5.63 5.82 86.49 0.50 6.14 16 22 N -0.59 -26.86 2.52 -645.67 -1.63 -28.49 16 23 C -0.26 -12.94 9.70 84.03 0.82 -12.13 16 24 H 0.07 3.36 7.90 -2.91 -0.02 3.34 16 25 C -0.04 -2.19 4.94 84.86 0.42 -1.77 16 26 N -0.92 -51.62 10.81 21.65 0.23 -51.39 16 27 Si 0.96 43.44 29.59 68.60 2.03 45.47 16 28 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 29 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 30 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.72 6.56 -2.39 -0.02 0.71 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.03 6.51 -2.39 -0.02 1.01 16 41 H 0.07 1.02 7.85 -2.39 -0.02 1.00 16 42 H 0.10 1.41 7.85 -2.38 -0.02 1.39 16 43 H 0.09 1.66 5.63 -2.39 -0.01 1.65 16 44 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.12 2.53 4.48 -2.39 -0.01 2.52 16 47 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.08 2.79 2.27 -3.46 -0.01 2.78 16 51 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 53 H 0.05 2.61 7.01 -2.39 -0.02 2.59 16 54 H 0.05 2.72 7.64 -2.39 -0.02 2.70 16 55 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -67.33 402.12 5.02 -62.32 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.85 Total: 23.14 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 5.88 Total: 10.78 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -2.75 Total: -102.97 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -0.99 Total: -38.73 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -67.33 5.02 -62.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269680715.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.827 kcal (2) G-P(sol) polarization free energy of solvation -67.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds