Wall clock time and date at job start Sat Apr 11 2020 05:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47360 * 2 1 4 4 C 1.53005 * 109.47124 * 119.99984 * 2 1 3 5 5 C 1.52996 * 109.47126 * 174.99714 * 4 2 1 6 6 O 1.42900 * 109.47265 * 179.97438 * 5 4 2 7 7 C 1.42892 * 114.00185 * 180.02562 * 6 5 4 8 8 H 1.09006 * 109.47130 * 330.00337 * 7 6 5 9 9 C 1.53004 * 109.47119 * 90.00322 * 7 6 5 10 10 C 1.50706 * 109.47341 * 210.00218 * 7 6 5 11 11 O 1.21280 * 119.99889 * 342.83087 * 10 7 6 12 12 N 1.34775 * 120.00089 * 162.82945 * 10 7 6 13 13 C 1.44786 * 120.18081 * 354.32971 * 12 10 7 14 14 C 1.52361 * 111.74453 * 265.09824 * 13 12 10 15 15 C 1.51314 * 112.41416 * 284.33901 * 14 13 12 16 16 H 1.09002 * 111.31380 * 186.29078 * 15 14 13 17 17 C 1.54717 * 107.22462 * 308.33898 * 15 14 13 18 18 C 1.54235 * 104.37599 * 89.47066 * 17 15 14 19 19 C 1.51127 * 105.27483 * 11.32453 * 18 17 15 20 20 H 1.08997 * 106.47446 * 122.82515 * 19 18 17 21 21 C 1.49812 * 120.18110 * 174.31211 * 12 10 7 22 22 N 1.48061 * 109.77084 * 8.26137 * 19 18 17 23 23 C 1.36931 * 127.84268 * 155.03292 * 22 19 18 24 24 H 1.08006 * 120.00044 * 171.93686 * 23 22 19 25 25 C 1.38816 * 120.00069 * 351.93557 * 23 22 19 26 26 N 1.31614 * 120.00090 * 359.96530 * 25 23 22 27 27 Si 1.86800 * 119.99865 * 179.68963 * 25 23 22 28 28 H 1.48494 * 109.47161 * 85.00017 * 27 25 23 29 29 H 1.48499 * 109.46761 * 204.99989 * 27 25 23 30 30 H 1.48501 * 109.47357 * 324.99951 * 27 25 23 31 31 H 1.09004 * 109.47411 * 300.00362 * 1 2 3 32 32 H 1.09001 * 109.47285 * 59.99661 * 1 2 3 33 33 H 1.09001 * 109.47277 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47122 * 239.99979 * 2 1 3 35 35 H 1.08998 * 109.47019 * 59.99916 * 3 2 1 36 36 H 1.08999 * 109.47471 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.47198 * 300.00393 * 3 2 1 38 38 H 1.09000 * 109.46724 * 55.00116 * 4 2 1 39 39 H 1.08996 * 109.46955 * 295.00011 * 4 2 1 40 40 H 1.09000 * 109.46991 * 60.00565 * 5 4 2 41 41 H 1.08996 * 109.47446 * 299.99997 * 5 4 2 42 42 H 1.09003 * 109.47013 * 184.84981 * 9 7 6 43 43 H 1.08998 * 109.46608 * 304.85257 * 9 7 6 44 44 H 1.09003 * 109.46934 * 64.85418 * 9 7 6 45 45 H 1.08998 * 108.93228 * 25.24253 * 13 12 10 46 46 H 1.08999 * 108.93048 * 143.91641 * 13 12 10 47 47 H 1.09001 * 108.31070 * 164.18322 * 14 13 12 48 48 H 1.08996 * 109.99366 * 45.64815 * 14 13 12 49 49 H 1.08999 * 110.44790 * 208.19075 * 17 15 14 50 50 H 1.08994 * 110.45307 * 330.61438 * 17 15 14 51 51 H 1.08994 * 110.28687 * 130.51151 * 18 17 15 52 52 H 1.09006 * 110.28096 * 252.51991 * 18 17 15 53 53 H 1.09008 * 109.54789 * 30.85402 * 21 12 10 54 54 H 1.09002 * 109.62525 * 270.62501 * 21 12 10 55 55 H 0.96992 * 120.00342 * 179.72163 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 8 4.0412 -1.5042 2.3550 7 6 5.4610 -1.6595 2.3976 8 1 5.8490 -1.7340 1.3816 9 6 6.0858 -0.4492 3.0947 10 6 5.8068 -2.9124 3.1604 11 8 4.9796 -3.4327 3.8787 12 7 7.0351 -3.4547 3.0443 13 6 7.9847 -2.9100 2.0967 14 6 7.9539 -3.6612 0.7716 15 6 8.6431 -5.0057 0.8544 16 1 8.7081 -5.4787 -0.1255 17 6 10.0468 -4.7646 1.4585 18 6 9.8356 -4.8918 2.9810 19 6 8.4469 -5.4655 3.1437 20 1 8.5577 -6.3850 3.7184 21 6 7.4256 -4.6241 3.8954 22 7 7.9124 -5.8657 1.8222 23 6 6.9576 -6.8096 1.5531 24 1 6.5659 -6.9114 0.5517 25 6 6.4930 -7.6357 2.5673 26 7 6.9707 -7.5123 3.7875 27 14 5.1841 -8.9175 2.2020 28 1 5.8299 -10.1515 1.6868 29 1 4.4382 -9.2319 3.4470 30 1 4.2438 -8.3880 1.1819 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6053 -1.7198 1.2951 39 1 1.7516 -0.1583 2.1370 40 1 3.9994 0.1674 1.1421 41 1 3.8531 -1.3941 0.3003 42 1 7.1722 -0.5256 3.0511 43 1 5.7653 0.4641 2.5935 44 1 5.7648 -0.4241 4.1361 45 1 7.7395 -1.8641 1.9119 46 1 8.9850 -2.9677 2.5257 47 1 8.4606 -3.0538 0.0217 48 1 6.9225 -3.8156 0.4546 49 1 10.7479 -5.5214 1.1067 50 1 10.4049 -3.7671 1.2037 51 1 10.5785 -5.5637 3.4108 52 1 9.8949 -3.9115 3.4540 53 1 6.5443 -5.2279 4.1121 54 1 7.8622 -4.2682 4.8286 55 1 6.6432 -8.0867 4.4970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270503919.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:35:21 Heat of formation + Delta-G solvation = -72.292679 kcal Electronic energy + Delta-G solvation = -32255.515257 eV Core-core repulsion = 28292.562726 eV Total energy + Delta-G solvation = -3962.952531 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.60477 -40.05750 -38.82737 -37.09310 -35.98923 -34.75757 -33.38416 -32.37239 -31.28264 -30.04755 -28.69822 -28.01633 -27.41904 -26.08072 -25.19842 -24.03157 -23.08697 -21.28303 -20.98190 -20.88029 -19.78538 -18.84530 -18.22410 -17.58944 -16.94595 -16.79818 -16.74117 -16.31759 -15.98846 -15.77649 -15.58264 -15.14168 -14.83840 -14.60241 -14.41292 -14.16258 -14.12866 -13.70659 -13.57017 -13.39333 -13.23405 -13.12818 -13.08141 -12.98402 -12.79659 -12.70062 -12.61155 -12.52745 -12.44718 -12.28693 -12.24226 -12.04126 -11.72862 -11.60236 -11.58521 -11.52815 -11.38965 -11.23590 -10.98793 -10.76688 -10.68633 -10.22030 -9.39799 -8.79895 -7.72292 -5.14630 1.38100 1.42123 1.46938 1.65301 1.97595 2.47364 2.84581 3.35285 3.56849 3.68249 3.83484 3.88103 3.96089 3.97499 4.03032 4.09409 4.12571 4.17844 4.28829 4.30533 4.39472 4.45619 4.52277 4.52973 4.65528 4.71843 4.74606 4.77247 4.81648 4.82165 4.86554 4.90318 4.92975 5.01328 5.06549 5.10119 5.10999 5.13895 5.18633 5.28184 5.28705 5.28866 5.38936 5.43875 5.48453 5.49971 5.61316 5.71763 5.87613 5.92889 6.16435 6.41740 6.72538 7.13908 7.35521 7.83156 8.54757 9.25672 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.003652 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.957401 B = 7664.422146 C = 8922.353659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.113 4.113 5 C 0.055 3.945 6 O -0.396 6.396 7 C 0.079 3.921 8 H 0.100 0.900 9 C -0.159 4.159 10 C 0.494 3.506 11 O -0.596 6.596 12 N -0.587 5.587 13 C 0.094 3.906 14 C -0.144 4.144 15 C 0.134 3.866 16 H 0.055 0.945 17 C -0.115 4.115 18 C -0.114 4.114 19 C 0.133 3.867 20 H 0.072 0.928 21 C 0.139 3.861 22 N -0.600 5.600 23 C -0.214 4.214 24 H 0.070 0.930 25 C -0.060 4.060 26 N -0.933 5.933 27 Si 0.959 3.041 28 H -0.279 1.279 29 H -0.302 1.302 30 H -0.285 1.285 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.049 0.951 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.025 0.975 49 H 0.060 0.940 50 H 0.107 0.893 51 H 0.062 0.938 52 H 0.087 0.913 53 H 0.046 0.954 54 H 0.044 0.956 55 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 21.333 -9.079 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.151 4.151 5 C -0.021 4.021 6 O -0.315 6.315 7 C 0.018 3.982 8 H 0.118 0.882 9 C -0.216 4.216 10 C 0.282 3.718 11 O -0.476 6.476 12 N -0.319 5.319 13 C -0.028 4.028 14 C -0.184 4.184 15 C 0.028 3.972 16 H 0.074 0.926 17 C -0.153 4.153 18 C -0.152 4.152 19 C 0.026 3.974 20 H 0.090 0.910 21 C 0.016 3.984 22 N -0.323 5.323 23 C -0.343 4.343 24 H 0.088 0.912 25 C -0.253 4.253 26 N -0.583 5.583 27 Si 0.789 3.211 28 H -0.205 1.205 29 H -0.229 1.229 30 H -0.211 1.211 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.069 0.931 45 H 0.118 0.882 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.044 0.956 49 H 0.078 0.922 50 H 0.125 0.875 51 H 0.081 0.919 52 H 0.105 0.895 53 H 0.064 0.936 54 H 0.063 0.937 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.683 20.773 -8.493 22.505 hybrid contribution -1.275 -1.659 0.224 2.104 sum 0.408 19.115 -8.269 20.831 Atomic orbital electron populations 1.21831 0.94444 1.01684 1.02473 1.21037 0.96394 0.96964 0.96500 1.21909 1.01437 0.94743 1.02439 1.21587 0.93187 1.00706 0.99578 1.22890 0.95765 0.96900 0.86561 1.88015 1.20346 1.79408 1.43725 1.21998 0.83087 0.92990 1.00089 0.88190 1.22214 1.02140 0.96236 1.01024 1.21277 0.81864 0.86176 0.82483 1.90638 1.49464 1.64466 1.43069 1.48442 1.13003 1.31546 1.38893 1.21709 0.94772 0.97347 0.88947 1.22107 1.00238 0.98137 0.97923 1.21492 0.91984 0.90447 0.93263 0.92639 1.22603 0.95783 1.02834 0.94106 1.21885 0.94685 1.00914 0.97685 1.20820 0.90361 0.97853 0.88405 0.91011 1.22408 0.99343 0.85184 0.91451 1.45118 1.44155 1.41081 1.01912 1.19092 1.12812 1.07603 0.94794 0.91203 1.25327 1.02456 1.01578 0.95934 1.69829 1.46460 1.41540 1.00481 0.85378 0.79347 0.80262 0.76080 1.20523 1.22942 1.21092 0.92486 0.91210 0.93403 0.90917 0.92491 0.91997 0.91487 0.93390 0.91408 0.90258 0.93358 0.88524 0.88491 0.93139 0.88176 0.87685 0.87639 0.95561 0.92163 0.87464 0.91909 0.89510 0.93559 0.93739 0.94888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.19 71.98 0.66 -1.60 16 2 C -0.09 -1.50 2.92 -10.79 -0.03 -1.53 16 3 C -0.15 -1.90 8.95 71.98 0.64 -1.26 16 4 C -0.11 -2.57 5.05 30.59 0.15 -2.42 16 5 C 0.05 1.31 5.50 71.98 0.40 1.71 16 6 O -0.40 -13.62 9.58 -130.53 -1.25 -14.87 16 7 C 0.08 2.42 2.27 29.85 0.07 2.49 16 8 H 0.10 2.55 6.70 -2.38 -0.02 2.53 16 9 C -0.16 -3.42 9.26 71.98 0.67 -2.75 16 10 C 0.49 21.18 6.96 87.66 0.61 21.79 16 11 O -0.60 -33.14 16.22 15.42 0.25 -32.89 16 12 N -0.59 -22.96 2.85 -820.11 -2.34 -25.30 16 13 C 0.09 2.55 4.73 86.49 0.41 2.96 16 14 C -0.14 -4.16 5.13 29.83 0.15 -4.01 16 15 C 0.13 4.74 4.01 44.61 0.18 4.92 16 16 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 17 C -0.11 -3.12 6.01 31.60 0.19 -2.93 16 18 C -0.11 -3.62 5.81 30.40 0.18 -3.44 16 19 C 0.13 5.94 1.97 43.81 0.09 6.03 16 20 H 0.07 3.93 5.58 -2.39 -0.01 3.92 16 21 C 0.14 6.55 5.84 85.46 0.50 7.05 16 22 N -0.60 -28.90 2.69 -650.00 -1.75 -30.64 16 23 C -0.21 -12.03 10.38 84.04 0.87 -11.15 16 24 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 25 C -0.06 -3.50 5.48 84.86 0.46 -3.03 16 26 N -0.93 -56.41 8.85 21.65 0.19 -56.22 16 27 Si 0.96 49.01 29.55 68.60 2.03 51.04 16 28 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 29 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 30 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.73 6.56 -2.39 -0.02 0.71 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.40 6.21 -2.39 -0.01 1.38 16 41 H 0.05 1.13 8.09 -2.39 -0.02 1.11 16 42 H 0.10 1.60 6.54 -2.39 -0.02 1.58 16 43 H 0.10 1.49 7.78 -2.39 -0.02 1.47 16 44 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.10 1.94 4.55 -2.39 -0.01 1.93 16 46 H 0.11 2.46 3.93 -2.39 -0.01 2.45 16 47 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.11 1.97 7.40 -2.39 -0.02 1.95 16 51 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 52 H 0.09 2.25 6.17 -2.38 -0.01 2.24 16 53 H 0.05 2.78 6.13 -2.38 -0.01 2.76 16 54 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 55 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -80.77 404.44 4.19 -76.58 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.86 Total: 19.48 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 6.20 Total: 12.83 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -3.89 Total: -112.16 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -1.00 Total: -47.76 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 2.03 Total: 51.04 kcal Total: -80.77 4.19 -76.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270503919.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.290 kcal (2) G-P(sol) polarization free energy of solvation -80.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds