Wall clock time and date at job start Sat Apr 11 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47279 * 2 1 4 4 C 1.53001 * 109.47173 * 240.00527 * 2 1 3 5 5 O 1.42896 * 109.47591 * 64.99793 * 4 2 1 6 6 C 1.52998 * 109.47338 * 120.00424 * 2 1 3 7 7 N 1.46905 * 109.46983 * 294.99697 * 6 2 1 8 8 C 1.47964 * 111.00289 * 293.95593 * 7 6 2 9 9 C 1.50470 * 112.68831 * 191.41983 * 8 7 6 10 10 C 1.54167 * 108.44061 * 93.85448 * 9 8 7 11 11 C 1.46051 * 112.40283 * 281.20119 * 10 9 8 12 12 C 1.54905 * 112.07358 * 181.94922 * 11 10 9 13 13 C 1.54425 * 101.81201 * 147.11659 * 12 11 10 14 14 N 1.46732 * 105.45845 * 334.30877 * 13 12 11 15 15 C 1.46499 * 124.33870 * 196.93775 * 14 13 12 16 16 C 1.53004 * 109.47198 * 90.00312 * 15 14 13 17 17 C 1.50700 * 109.47208 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99770 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00083 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46986 * 270.00126 * 21 19 17 23 23 H 1.48496 * 109.47029 * 30.00143 * 21 19 17 24 24 H 1.48499 * 109.47352 * 149.99973 * 21 19 17 25 25 C 1.34315 * 111.32385 * 17.21052 * 14 13 12 26 26 O 1.21280 * 124.90492 * 179.71102 * 25 14 13 27 27 C 1.54558 * 112.07734 * 60.82682 * 11 10 9 28 28 C 1.48057 * 110.99997 * 165.22675 * 7 6 2 29 29 H 1.08998 * 109.47279 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47091 * 299.99383 * 1 2 3 31 31 H 1.08999 * 109.47372 * 60.00035 * 1 2 3 32 32 H 1.09000 * 109.47393 * 185.00236 * 4 2 1 33 33 H 1.09006 * 109.46769 * 304.99478 * 4 2 1 34 34 H 0.96698 * 114.00592 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.47275 * 175.00490 * 6 2 1 36 36 H 1.09001 * 109.47486 * 54.99917 * 6 2 1 37 37 H 1.09008 * 108.84134 * 70.58723 * 8 7 6 38 38 H 1.09005 * 108.83867 * 312.24474 * 8 7 6 39 39 H 1.09002 * 109.64300 * 334.17158 * 9 8 7 40 40 H 1.09004 * 109.64217 * 213.53703 * 9 8 7 41 41 H 1.08999 * 108.90027 * 160.44522 * 10 9 8 42 42 H 1.09009 * 108.89542 * 41.94851 * 10 9 8 43 43 H 1.09000 * 110.96735 * 28.98110 * 12 11 10 44 44 H 1.09007 * 110.99057 * 265.25091 * 12 11 10 45 45 H 1.09010 * 110.24585 * 215.31683 * 13 12 11 46 46 H 1.08995 * 110.32544 * 93.35091 * 13 12 11 47 47 H 1.09000 * 109.47602 * 330.00259 * 15 14 13 48 48 H 1.08998 * 109.47492 * 210.00248 * 15 14 13 49 49 H 1.08994 * 109.47074 * 60.00190 * 16 15 14 50 50 H 1.08998 * 109.47285 * 300.00026 * 16 15 14 51 51 H 0.97005 * 119.99661 * 359.97438 * 20 19 17 52 52 H 1.09003 * 109.60417 * 41.86006 * 27 11 10 53 53 H 1.09012 * 109.59912 * 162.33090 * 27 11 10 54 54 H 1.09003 * 108.77761 * 205.62064 * 28 7 6 55 55 H 1.09006 * 108.77618 * 323.92050 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 1.6619 0.0169 -2.4131 6 6 2.0400 -0.7213 1.2492 7 7 1.6514 0.0373 2.4456 8 6 2.3390 1.3467 2.4898 9 6 2.1881 2.0370 3.8183 10 6 3.4069 1.6825 4.6933 11 6 3.2968 0.3535 5.2889 12 6 4.5020 0.0245 6.2048 13 6 3.8444 -0.8593 7.2871 14 7 2.4328 -0.4598 7.3137 15 6 1.5080 -0.7654 8.4081 16 6 1.5479 0.3638 9.4398 17 6 0.5961 0.0498 10.5652 18 1 0.0206 -0.8640 10.5467 19 6 0.4599 0.9290 11.6185 20 7 1.1603 2.0419 11.6408 21 14 -0.7193 0.5394 13.0139 22 1 -2.0595 1.0966 12.6995 23 1 -0.8217 -0.9327 13.1791 24 1 -0.2144 1.1448 14.2724 25 6 2.0956 0.2168 6.2035 26 8 0.9904 0.6571 5.9679 27 6 3.2061 -0.7573 4.2181 28 6 1.8075 -0.7832 3.6681 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 3.1263 -0.7994 -1.2057 33 1 1.6053 -1.7198 -1.2952 34 1 1.9525 -0.3831 -3.2442 35 1 3.1263 -0.7995 1.2055 36 1 1.6054 -1.7199 1.2951 37 1 1.9258 1.9878 1.7110 38 1 3.3999 1.1941 2.2910 39 1 1.2750 1.6964 4.3066 40 1 2.1464 3.1159 3.6680 41 1 3.4957 2.4204 5.4906 42 1 4.3060 1.7202 4.0782 43 1 4.9185 0.9317 6.6423 44 1 5.2663 -0.5300 5.6602 45 1 4.3070 -0.6750 8.2568 46 1 3.9336 -1.9126 7.0214 47 1 1.8028 -1.7014 8.8824 48 1 0.4966 -0.8610 8.0131 49 1 1.2529 1.2998 8.9656 50 1 2.5592 0.4595 9.8348 51 1 1.7729 2.2440 10.9164 52 1 3.9115 -0.5484 3.4138 53 1 3.4390 -1.7213 4.6706 54 1 1.1236 -0.4104 4.4306 55 1 1.5430 -1.8146 3.4345 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274068438.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:35:48 Heat of formation + Delta-G solvation = -114.068507 kcal Electronic energy + Delta-G solvation = -31497.475774 eV Core-core repulsion = 27532.711707 eV Total energy + Delta-G solvation = -3964.764067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.59937 -39.66824 -38.18270 -37.64267 -36.63622 -35.58712 -34.00297 -33.48106 -31.82737 -29.92477 -28.39435 -27.35889 -26.81595 -26.14122 -25.21961 -24.07510 -23.23252 -22.03482 -21.38409 -20.34291 -19.71686 -19.06439 -18.29017 -17.61422 -17.43707 -17.09715 -16.53869 -16.27986 -16.13326 -15.69538 -15.46665 -15.40803 -14.88945 -14.77450 -14.72096 -14.66694 -14.35189 -14.13207 -13.91283 -13.63743 -13.62499 -13.44229 -13.28014 -13.14027 -12.98005 -12.72453 -12.72000 -12.43641 -12.33531 -12.18412 -12.06416 -11.98648 -11.92303 -11.89957 -11.61764 -11.47441 -11.37126 -11.16107 -10.91252 -10.83306 -10.61978 -10.29527 -9.60187 -8.99018 -8.76812 -6.48009 1.49654 1.59494 1.60296 1.77181 2.09996 2.54083 2.80361 3.09525 3.14041 3.42412 3.53466 3.61324 3.87426 3.94366 3.98372 4.06648 4.12145 4.16290 4.21898 4.27326 4.32815 4.39399 4.41419 4.47211 4.55302 4.60677 4.62675 4.65254 4.67718 4.70406 4.75336 4.78539 4.83412 4.89060 4.96684 4.99001 5.01610 5.04525 5.09275 5.13672 5.15988 5.20362 5.26660 5.36345 5.37806 5.46807 5.50551 5.60073 5.91751 6.08968 6.25870 6.28956 6.29721 6.46370 6.94313 7.22801 7.35884 8.63591 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.002368 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.495856 B =11819.483671 C =12270.817883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 H 0.065 0.935 4 C 0.083 3.917 5 O -0.594 6.594 6 C 0.070 3.930 7 N -0.555 5.555 8 C 0.076 3.924 9 C -0.143 4.143 10 C -0.095 4.095 11 C -0.077 4.077 12 C -0.116 4.116 13 C 0.093 3.907 14 N -0.621 5.621 15 C 0.150 3.850 16 C 0.010 3.990 17 C -0.619 4.619 18 H 0.058 0.942 19 C -0.040 4.040 20 N -0.935 5.935 21 Si 1.124 2.876 22 H -0.277 1.277 23 H -0.262 1.262 24 H -0.280 1.280 25 C 0.507 3.493 26 O -0.565 6.565 27 C -0.116 4.116 28 C 0.032 3.968 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.396 0.604 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.044 0.956 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.132 0.868 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.052 0.948 49 H -0.032 1.032 50 H -0.004 1.004 51 H 0.252 0.748 52 H 0.096 0.904 53 H 0.089 0.911 54 H 0.070 0.930 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.454 -9.820 -25.699 29.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.107 4.107 3 H 0.084 0.916 4 C 0.005 3.995 5 O -0.402 6.402 6 C -0.058 4.058 7 N -0.280 5.280 8 C -0.050 4.050 9 C -0.181 4.181 10 C -0.133 4.133 11 C -0.080 4.080 12 C -0.153 4.153 13 C -0.029 4.029 14 N -0.352 5.352 15 C 0.028 3.972 16 C -0.028 4.028 17 C -0.657 4.657 18 H 0.076 0.924 19 C -0.238 4.238 20 N -0.572 5.572 21 Si 0.944 3.056 22 H -0.202 1.202 23 H -0.186 1.186 24 H -0.205 1.205 25 C 0.297 3.703 26 O -0.445 6.445 27 C -0.155 4.155 28 C -0.095 4.095 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.246 0.754 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.150 0.850 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.070 0.930 49 H -0.014 1.014 50 H 0.014 0.986 51 H 0.061 0.939 52 H 0.114 0.886 53 H 0.107 0.893 54 H 0.088 0.912 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.542 -8.593 -23.902 27.132 hybrid contribution 1.238 -0.503 -1.317 1.876 sum 10.780 -9.096 -25.218 28.895 Atomic orbital electron populations 1.21561 0.95067 1.01269 1.00689 1.21096 0.96651 1.00040 0.92905 0.91611 1.22166 0.98509 0.94079 0.84708 1.86438 1.82056 1.54194 1.17539 1.22046 0.98400 0.96784 0.88530 1.61659 1.60310 1.03987 1.02055 1.21674 0.96725 0.89785 0.96846 1.21603 1.00053 1.00223 0.96180 1.20374 0.99646 0.93822 0.99412 1.20476 0.93178 0.98802 0.95575 1.22935 0.96449 1.00849 0.95070 1.22352 0.79092 1.00518 1.00919 1.48617 1.12729 1.55102 1.18786 1.21156 0.91912 0.98220 0.85932 1.19364 0.95514 0.93798 0.94153 1.22386 1.26742 1.08897 1.07653 0.92404 1.27579 1.00028 0.92662 1.03489 1.70897 1.25971 1.25606 1.34704 0.82873 0.73588 0.76736 0.72433 1.20240 1.18599 1.20500 1.21595 0.89971 0.76316 0.82442 1.90571 1.26689 1.50852 1.76429 1.21907 0.98784 0.97463 0.97375 1.22242 0.97083 0.97253 0.92897 0.93038 0.93417 0.93580 0.92355 0.92666 0.75421 0.93450 0.90460 0.91443 0.93347 0.90875 0.91223 0.93678 0.88109 0.90324 0.85008 0.90865 0.88371 0.89380 0.92983 1.01367 0.98569 0.93861 0.88562 0.89292 0.91249 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.98 71.98 0.65 -1.96 16 2 C -0.09 -1.49 2.55 -10.80 -0.03 -1.51 16 3 H 0.07 1.27 6.56 -2.39 -0.02 1.25 16 4 C 0.08 1.04 6.43 71.98 0.46 1.50 16 5 O -0.59 -8.60 13.19 -148.98 -1.97 -10.56 16 6 C 0.07 1.13 4.27 86.30 0.37 1.50 16 7 N -0.55 -12.29 4.13 -900.37 -3.72 -16.01 16 8 C 0.08 1.62 4.48 85.28 0.38 2.00 16 9 C -0.14 -3.80 5.55 30.17 0.17 -3.63 16 10 C -0.09 -2.22 4.14 28.85 0.12 -2.10 16 11 C -0.08 -1.83 0.57 -53.60 -0.03 -1.86 16 12 C -0.12 -2.13 6.03 31.73 0.19 -1.94 16 13 C 0.09 2.23 7.06 86.82 0.61 2.84 16 14 N -0.62 -22.08 2.93 -817.90 -2.40 -24.48 16 15 C 0.15 6.52 5.87 86.38 0.51 7.03 16 16 C 0.01 0.53 4.61 29.85 0.14 0.67 16 17 C -0.62 -36.44 9.11 25.60 0.23 -36.21 16 18 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 19 C -0.04 -2.41 5.46 84.65 0.46 -1.95 16 20 N -0.93 -60.08 13.65 21.45 0.29 -59.79 16 21 Si 1.12 51.43 29.90 68.60 2.05 53.48 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 25 C 0.51 18.32 5.69 88.01 0.50 18.82 16 26 O -0.56 -25.68 12.92 -3.03 -0.04 -25.72 16 27 C -0.12 -2.13 4.38 30.26 0.13 -2.00 16 28 C 0.03 0.78 4.99 85.21 0.43 1.20 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 1.16 7.75 -2.38 -0.02 1.14 16 31 H 0.05 0.97 7.82 -2.39 -0.02 0.95 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.40 1.96 9.12 -74.06 -0.68 1.28 16 35 H 0.05 0.62 7.82 -2.39 -0.02 0.60 16 36 H 0.08 1.19 7.67 -2.39 -0.02 1.17 16 37 H 0.07 1.44 6.88 -2.38 -0.02 1.43 16 38 H 0.05 0.82 6.39 -2.38 -0.02 0.81 16 39 H 0.07 2.62 4.61 -2.39 -0.01 2.61 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.04 1.22 8.12 -2.39 -0.02 1.20 16 42 H 0.10 1.66 7.50 -2.38 -0.02 1.64 16 43 H 0.08 1.53 7.98 -2.39 -0.02 1.51 16 44 H 0.13 1.32 7.86 -2.38 -0.02 1.30 16 45 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 48 H 0.05 2.45 7.92 -2.39 -0.02 2.43 16 49 H -0.03 -2.01 8.01 -2.39 -0.02 -2.03 16 50 H 0.00 -0.22 8.01 -2.39 -0.02 -0.24 16 51 H 0.25 16.59 7.22 -92.70 -0.67 15.92 16 52 H 0.10 1.33 6.88 -2.39 -0.02 1.32 16 53 H 0.09 1.37 7.71 -2.38 -0.02 1.36 16 54 H 0.07 2.35 3.85 -2.39 -0.01 2.34 16 55 H 0.07 1.55 7.56 -2.38 -0.02 1.53 16 Total: -1.00 -80.34 406.18 -0.19 -80.54 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.29 Total: 20.13 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 5.29 Total: -17.58 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -5.82 Total: -100.28 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -2.00 Total: -36.28 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.48 kcal Total: -80.34 -0.19 -80.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274068438.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.533 kcal (2) G-P(sol) polarization free energy of solvation -80.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds