Wall clock time and date at job start Sat Apr 11 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47031 * 2 1 4 4 C 1.52999 * 109.47255 * 239.99344 * 2 1 3 5 5 O 1.42903 * 109.46811 * 59.39607 * 4 2 1 6 6 C 1.53008 * 109.46740 * 119.99452 * 2 1 3 7 7 N 1.46903 * 109.46793 * 185.94947 * 6 2 1 8 8 C 1.44265 * 111.00448 * 282.50719 * 7 6 2 9 9 C 1.53872 * 108.24067 * 221.59170 * 8 7 6 10 10 C 1.46030 * 112.74184 * 278.03523 * 9 8 7 11 11 C 1.54437 * 111.20057 * 61.24865 * 10 9 8 12 12 C 1.54115 * 109.05015 * 160.84458 * 11 10 9 13 13 C 1.54592 * 101.62998 * 266.97447 * 12 11 10 14 14 N 1.46830 * 105.48392 * 334.99803 * 13 12 11 15 15 C 1.46503 * 124.36132 * 196.86316 * 14 13 12 16 16 C 1.53003 * 109.46883 * 90.00528 * 15 14 13 17 17 C 1.50704 * 109.46732 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00383 * 0.27046 * 17 16 15 19 19 C 1.37876 * 119.99721 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00194 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00051 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47277 * 59.99931 * 21 19 17 23 23 H 1.48501 * 109.47479 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47254 * 300.00158 * 21 19 17 25 25 C 1.34613 * 111.27047 * 17.13378 * 14 13 12 26 26 O 1.21281 * 125.03937 * 179.10161 * 25 14 13 27 27 C 1.50281 * 109.61038 * 282.99314 * 11 10 9 28 28 C 1.48034 * 110.99954 * 49.88206 * 7 6 2 29 29 H 1.09002 * 109.47156 * 304.84622 * 1 2 3 30 30 H 1.08993 * 109.47184 * 64.84253 * 1 2 3 31 31 H 1.08995 * 109.47401 * 184.84621 * 1 2 3 32 32 H 1.09001 * 109.47159 * 179.39421 * 4 2 1 33 33 H 1.08998 * 109.47271 * 299.40047 * 4 2 1 34 34 H 0.96700 * 113.99964 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.47106 * 65.95816 * 6 2 1 36 36 H 1.08991 * 109.47183 * 305.94914 * 6 2 1 37 37 H 1.09003 * 109.70648 * 101.89924 * 8 7 6 38 38 H 1.09006 * 109.74062 * 341.29969 * 8 7 6 39 39 H 1.08999 * 108.82980 * 157.19953 * 9 8 7 40 40 H 1.08996 * 108.83344 * 38.87902 * 9 8 7 41 41 H 1.09000 * 109.13321 * 300.81380 * 10 9 8 42 42 H 1.08996 * 109.09159 * 181.66500 * 10 9 8 43 43 H 1.09001 * 110.99137 * 148.88337 * 12 11 10 44 44 H 1.08998 * 111.02717 * 25.08030 * 12 11 10 45 45 H 1.08997 * 110.24019 * 215.99403 * 13 12 11 46 46 H 1.08997 * 110.31479 * 94.03851 * 13 12 11 47 47 H 1.08997 * 109.47291 * 329.99993 * 15 14 13 48 48 H 1.09001 * 109.46722 * 210.00192 * 15 14 13 49 49 H 1.08995 * 109.47110 * 59.99470 * 16 15 14 50 50 H 1.09000 * 109.46661 * 299.99532 * 16 15 14 51 51 H 0.97000 * 120.00462 * 179.97438 * 20 19 17 52 52 H 1.08994 * 108.81252 * 212.62343 * 27 11 10 53 53 H 1.09006 * 108.81247 * 330.90371 * 27 11 10 54 54 H 1.08997 * 108.73085 * 313.39565 * 28 7 6 55 55 H 1.09005 * 108.72543 * 71.57466 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 1.5521 -0.0561 -2.4159 6 6 2.0399 -0.7212 1.2494 7 7 3.5019 -0.5981 1.3233 8 6 4.1445 -1.5102 0.4088 9 6 5.3594 -2.1302 1.1211 10 6 6.5354 -1.2650 1.0879 11 6 6.2632 0.0752 1.8053 12 6 7.6084 0.7333 2.1693 13 6 7.8309 0.2127 3.6078 14 7 6.4912 -0.0920 4.1259 15 6 6.1751 -0.2739 5.5448 16 6 5.7903 1.0738 6.1584 17 6 5.4645 0.8865 7.6179 18 1 5.5300 -0.0947 8.0642 19 6 5.0887 1.9690 8.3847 20 7 5.0150 3.1650 7.8427 21 14 4.6842 1.7369 10.1935 22 1 5.8709 1.1914 10.9001 23 1 4.3120 3.0451 10.7894 24 1 3.5486 0.7895 10.3292 25 6 5.5922 -0.1884 3.1287 26 8 4.4162 -0.4470 3.2739 27 6 5.4412 0.9654 0.9162 28 6 3.9251 0.8100 1.1517 29 1 -0.3633 0.5872 0.8434 30 1 -0.3633 0.4368 -0.9301 31 1 -0.3634 -1.0239 0.0868 32 1 3.1300 -0.7120 -1.2546 33 1 1.6855 -1.7521 -1.2437 34 1 1.8371 -0.4599 -3.2471 35 1 1.7662 -1.7750 1.1977 36 1 1.5922 -0.2725 2.1360 37 1 4.4747 -0.9696 -0.4782 38 1 3.4462 -2.2963 0.1214 39 1 5.6051 -3.0762 0.6387 40 1 5.0959 -2.3258 2.1605 41 1 6.8037 -1.0666 0.0502 42 1 7.3650 -1.7720 1.5807 43 1 7.5279 1.8202 2.1552 44 1 8.4024 0.3941 1.5040 45 1 8.3054 0.9813 4.2178 46 1 8.4437 -0.6885 3.5936 47 1 7.0468 -0.6735 6.0630 48 1 5.3422 -0.9699 5.6451 49 1 4.9186 1.4733 5.6402 50 1 6.6232 1.7697 6.0581 51 1 4.7503 3.9265 8.3820 52 1 5.7213 2.0023 1.1013 53 1 5.6619 0.7241 -0.1236 54 1 3.3932 1.2340 0.3000 55 1 3.6527 1.3689 2.0471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274068439.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:35:51 Heat of formation + Delta-G solvation = -73.836386 kcal Electronic energy + Delta-G solvation = -32522.107039 eV Core-core repulsion = 28559.087568 eV Total energy + Delta-G solvation = -3963.019472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.23029 -40.02511 -37.84082 -37.09019 -36.42392 -35.29000 -33.92815 -33.33212 -32.11446 -29.92855 -28.01135 -27.44610 -26.96841 -26.51012 -24.93281 -23.75036 -23.14307 -21.64782 -21.43270 -20.51041 -19.29419 -18.61234 -18.16966 -17.30821 -17.18054 -16.93408 -16.65486 -16.45445 -16.16451 -15.57317 -15.45616 -15.10366 -14.83966 -14.56012 -14.50994 -14.31475 -14.09130 -14.01063 -13.73516 -13.65148 -13.59779 -13.41543 -13.13196 -12.96001 -12.83116 -12.70428 -12.58114 -12.49995 -12.35715 -12.10285 -12.04127 -11.88623 -11.86041 -11.73345 -11.48373 -11.40678 -11.29462 -11.22853 -11.12734 -10.69968 -10.59592 -9.98427 -9.24918 -8.41218 -8.23016 -6.36081 1.37375 1.41846 1.49389 2.07216 2.34704 2.49967 3.09362 3.09734 3.35202 3.42474 3.67413 3.78643 3.87010 3.90957 4.06343 4.14537 4.17611 4.26635 4.29905 4.35614 4.41891 4.47700 4.53985 4.56300 4.58788 4.67153 4.69871 4.71698 4.77898 4.79892 4.86171 4.91322 4.96435 4.99035 5.01206 5.08086 5.12260 5.16177 5.18578 5.23524 5.27391 5.30939 5.35771 5.39107 5.43367 5.53759 5.60712 5.68928 5.95376 6.21113 6.38627 6.62439 6.69805 6.79927 6.90646 7.33304 7.75547 8.88643 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.003316 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.738216 B = 8442.098575 C = 9813.537674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.132 4.132 3 H 0.066 0.934 4 C 0.075 3.925 5 O -0.591 6.591 6 C 0.076 3.924 7 N -0.517 5.517 8 C 0.063 3.937 9 C -0.124 4.124 10 C -0.086 4.086 11 C -0.080 4.080 12 C -0.115 4.115 13 C 0.097 3.903 14 N -0.637 5.637 15 C 0.150 3.850 16 C 0.030 3.970 17 C -0.546 4.546 18 H 0.064 0.936 19 C 0.000 4.000 20 N -0.933 5.933 21 Si 0.969 3.031 22 H -0.260 1.260 23 H -0.282 1.282 24 H -0.270 1.270 25 C 0.501 3.499 26 O -0.507 6.507 27 C -0.097 4.097 28 C 0.071 3.929 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.395 0.605 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.126 0.874 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.048 0.952 49 H -0.029 1.029 50 H -0.006 1.006 51 H 0.264 0.736 52 H 0.069 0.931 53 H 0.096 0.904 54 H 0.045 0.955 55 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -10.285 -23.743 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.153 4.153 3 H 0.084 0.916 4 C -0.002 4.002 5 O -0.399 6.399 6 C -0.053 4.053 7 N -0.240 5.240 8 C -0.065 4.065 9 C -0.163 4.163 10 C -0.123 4.123 11 C -0.084 4.084 12 C -0.152 4.152 13 C -0.026 4.026 14 N -0.372 5.372 15 C 0.028 3.972 16 C -0.008 4.008 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.573 5.573 21 Si 0.793 3.207 22 H -0.184 1.184 23 H -0.207 1.207 24 H -0.195 1.195 25 C 0.288 3.712 26 O -0.379 6.379 27 C -0.135 4.135 28 C -0.056 4.056 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.244 0.756 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.115 0.885 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.144 0.856 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.095 0.905 48 H 0.066 0.934 49 H -0.010 1.010 50 H 0.012 0.988 51 H 0.072 0.928 52 H 0.088 0.912 53 H 0.114 0.886 54 H 0.063 0.937 55 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.673 -10.031 -22.644 24.910 hybrid contribution -0.615 0.458 0.553 0.946 sum 2.058 -9.572 -22.091 24.163 Atomic orbital electron populations 1.21617 0.94336 1.01920 1.01396 1.21889 0.97347 1.00857 0.95159 0.91560 1.22627 0.98229 0.94796 0.84564 1.86433 1.77552 1.58784 1.17141 1.22141 0.88018 1.00119 0.94988 1.61109 1.04796 1.05674 1.52385 1.22072 0.96201 0.95251 0.93007 1.20639 0.95449 0.99139 1.01026 1.20556 0.98190 0.92430 1.01144 1.20890 0.95870 0.98592 0.93017 1.22798 0.96777 1.00693 0.94962 1.22215 0.83794 1.00962 0.95599 1.48760 1.10933 1.71359 1.06163 1.21122 0.99512 0.97252 0.79306 1.19144 0.93944 0.93182 0.94515 1.21547 1.46401 0.94816 0.95621 0.91786 1.26017 0.95015 0.94733 1.03987 1.70115 1.48730 1.00113 1.38305 0.85446 0.79213 0.77468 0.78594 1.18440 1.20735 1.19492 1.21156 0.86156 0.76657 0.87257 1.90841 1.15305 1.46873 1.84916 1.21340 0.92802 0.99256 1.00109 1.22322 0.95634 0.89314 0.98330 0.93540 0.92368 0.92130 0.91776 0.92863 0.75567 0.90429 0.93485 0.92416 0.91053 0.90393 0.94348 0.88512 0.91049 0.90652 0.85610 0.91813 0.89549 0.90489 0.93377 1.01045 0.98811 0.92755 0.91230 0.88552 0.93700 0.95743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.11 71.98 0.66 -2.30 16 2 C -0.13 -3.01 2.22 -10.79 -0.02 -3.03 16 3 H 0.07 1.74 5.66 -2.39 -0.01 1.73 16 4 C 0.07 1.30 5.30 71.98 0.38 1.69 16 5 O -0.59 -10.34 12.88 -148.98 -1.92 -12.26 16 6 C 0.08 2.03 5.05 86.31 0.44 2.47 16 7 N -0.52 -14.45 1.40 -895.69 -1.26 -15.71 16 8 C 0.06 1.28 3.54 87.09 0.31 1.59 16 9 C -0.12 -2.64 5.16 28.75 0.15 -2.49 16 10 C -0.09 -1.54 4.29 28.94 0.12 -1.42 16 11 C -0.08 -1.94 0.57 -52.94 -0.03 -1.97 16 12 C -0.11 -2.32 6.09 31.51 0.19 -2.13 16 13 C 0.10 2.58 7.30 86.86 0.63 3.22 16 14 N -0.64 -23.84 2.94 -818.09 -2.40 -26.24 16 15 C 0.15 6.79 5.88 86.38 0.51 7.30 16 16 C 0.03 1.71 5.30 29.85 0.16 1.87 16 17 C -0.55 -32.45 9.11 25.60 0.23 -32.21 16 18 H 0.06 3.60 7.74 -2.91 -0.02 3.58 16 19 C 0.00 0.03 5.46 84.65 0.46 0.49 16 20 N -0.93 -59.10 13.29 21.45 0.28 -58.81 16 21 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 22 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 25 C 0.50 18.29 5.51 87.68 0.48 18.77 16 26 O -0.51 -22.25 11.51 -3.03 -0.03 -22.28 16 27 C -0.10 -2.22 4.77 30.13 0.14 -2.08 16 28 C 0.07 2.04 4.21 86.50 0.36 2.40 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.29 7.52 -2.39 -0.02 1.27 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.02 4.52 -2.39 -0.01 1.01 16 33 H 0.05 0.81 8.04 -2.39 -0.02 0.79 16 34 H 0.39 3.09 9.12 -74.06 -0.68 2.42 16 35 H 0.08 1.89 7.56 -2.39 -0.02 1.87 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 0.96 4.96 -2.39 -0.01 0.94 16 38 H 0.07 1.29 6.49 -2.38 -0.02 1.28 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.04 1.16 6.23 -2.39 -0.01 1.15 16 41 H 0.10 1.15 7.64 -2.39 -0.02 1.13 16 42 H 0.07 1.20 7.94 -2.39 -0.02 1.18 16 43 H 0.07 1.60 7.50 -2.39 -0.02 1.58 16 44 H 0.13 1.51 7.85 -2.39 -0.02 1.49 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 48 H 0.05 2.32 7.92 -2.39 -0.02 2.31 16 49 H -0.03 -1.89 8.14 -2.39 -0.02 -1.91 16 50 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 51 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 52 H 0.07 1.61 7.40 -2.39 -0.02 1.59 16 53 H 0.10 1.56 6.71 -2.38 -0.02 1.55 16 54 H 0.05 1.17 5.25 -2.39 -0.01 1.16 16 55 H 0.02 0.92 7.51 -2.38 -0.02 0.91 16 Total: -1.00 -78.98 396.89 2.07 -76.91 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.20 Total: 18.52 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 5.18 Total: -7.84 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -3.38 Total: -100.76 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.95 Total: -34.54 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -78.98 2.07 -76.91 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274068439.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.074 kcal (2) G-P(sol) polarization free energy of solvation -78.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds