Wall clock time and date at job start Sat Apr 11 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00187 * 2 1 4 4 C 1.53001 * 109.47363 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46874 * 55.00323 * 4 3 2 6 6 C 1.52997 * 109.47002 * 295.00564 * 4 3 2 7 7 C 1.52999 * 109.47201 * 175.00576 * 4 3 2 8 8 C 1.50696 * 109.46748 * 185.00256 * 7 4 3 9 9 O 1.21281 * 120.00382 * 359.97438 * 8 7 4 10 10 N 1.34779 * 119.99661 * 179.97438 * 8 7 4 11 11 C 1.46934 * 120.63020 * 179.97438 * 10 8 7 12 12 C 1.53191 * 108.77642 * 233.58903 * 11 10 8 13 13 C 1.53047 * 109.31053 * 305.36698 * 12 11 10 14 14 C 1.53001 * 109.45814 * 181.38581 * 13 12 11 15 15 H 1.08996 * 110.88803 * 302.39733 * 14 13 12 16 16 C 1.55159 * 111.03830 * 66.30161 * 14 13 12 17 17 C 1.54338 * 103.02244 * 153.39448 * 16 14 13 18 18 N 1.47024 * 107.26010 * 338.14091 * 17 16 14 19 19 C 1.36937 * 125.64167 * 178.84693 * 18 17 16 20 20 H 1.08003 * 120.00130 * 189.75464 * 19 18 17 21 21 C 1.38820 * 120.00182 * 9.75491 * 19 18 17 22 22 N 1.31615 * 119.99875 * 195.14155 * 21 19 18 23 23 Si 1.86789 * 119.99937 * 15.14177 * 21 19 18 24 24 H 1.48508 * 109.47342 * 54.48976 * 23 21 19 25 25 H 1.48500 * 109.47225 * 174.49146 * 23 21 19 26 26 H 1.48499 * 109.47361 * 294.49128 * 23 21 19 27 27 C 1.47421 * 108.70828 * 358.58741 * 18 17 16 28 28 C 1.53037 * 109.52883 * 61.37036 * 13 12 11 29 29 C 1.46930 * 120.63187 * 359.97438 * 10 8 7 30 30 H 1.08997 * 109.47045 * 299.99766 * 1 2 3 31 31 H 1.08997 * 109.47457 * 59.99005 * 1 2 3 32 32 H 1.08998 * 109.47392 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46937 * 60.00483 * 3 2 1 34 34 H 1.09000 * 109.47666 * 300.00666 * 3 2 1 35 35 H 1.09003 * 109.47374 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.47110 * 299.99615 * 6 4 3 37 37 H 1.08996 * 109.47662 * 59.99819 * 6 4 3 38 38 H 1.08995 * 109.47152 * 64.99900 * 7 4 3 39 39 H 1.08997 * 109.47045 * 305.00126 * 7 4 3 40 40 H 1.08996 * 109.58227 * 113.80004 * 11 10 8 41 41 H 1.08998 * 109.70184 * 353.44832 * 11 10 8 42 42 H 1.08997 * 109.49713 * 185.41733 * 12 11 10 43 43 H 1.08998 * 109.52505 * 65.33110 * 12 11 10 44 44 H 1.09000 * 109.45821 * 301.35782 * 13 12 11 45 45 H 1.09001 * 110.72227 * 271.95611 * 16 14 13 46 46 H 1.09002 * 110.72039 * 35.22937 * 16 14 13 47 47 H 1.09001 * 109.98951 * 218.66916 * 17 16 14 48 48 H 1.08997 * 109.77846 * 97.49473 * 17 16 14 49 49 H 0.97006 * 120.00193 * 2.97793 * 22 21 19 50 50 H 1.08993 * 110.36637 * 143.19488 * 27 18 17 51 51 H 1.09007 * 110.36086 * 265.40568 * 27 18 17 52 52 H 1.09002 * 109.49428 * 58.58369 * 28 13 12 53 53 H 1.09005 * 109.49821 * 178.67452 * 28 13 12 54 54 H 1.09007 * 109.58262 * 246.19847 * 29 10 8 55 55 H 1.08997 * 109.58553 * 6.47400 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5685 -0.8428 6 6 3.9962 0.5363 1.3063 7 6 4.1573 2.5769 -0.1262 8 6 5.6537 2.4493 -0.2504 9 8 6.1719 1.3528 -0.2391 10 7 6.4162 3.5537 -0.3741 11 6 7.8765 3.4455 -0.4956 12 6 8.5271 4.3268 0.5753 13 6 7.9900 5.7545 0.4505 14 6 8.6633 6.6456 1.4963 15 1 8.4975 6.2583 2.5016 16 6 10.1790 6.8007 1.2032 17 6 10.5188 8.1644 1.8411 18 7 9.2629 8.9214 1.9473 19 6 9.1295 10.1750 2.4819 20 1 8.1461 10.5846 2.6593 21 6 10.2584 10.9195 2.7957 22 7 10.1540 11.9781 3.5707 23 14 11.9255 10.4187 2.1181 24 1 11.8464 10.3103 0.6391 25 1 12.9370 11.4418 2.4861 26 1 12.3184 9.1060 2.6903 27 6 8.1720 8.1098 1.3774 28 6 6.4769 5.7537 0.6795 29 6 5.8031 4.8889 -0.3900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8898 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8901 34 1 1.6886 1.8465 -0.8899 35 1 5.0828 0.4498 1.3057 36 1 3.6810 1.1524 2.1485 37 1 3.5533 -0.4556 1.3959 38 1 3.9149 3.1643 0.7594 39 1 3.7603 3.0736 -1.0115 40 1 8.1868 3.7828 -1.4845 41 1 8.1815 2.4091 -0.3507 42 1 9.6080 4.3313 0.4354 43 1 8.2897 3.9340 1.5639 44 1 8.2062 6.1380 -0.5466 45 1 10.7472 5.9992 1.6754 46 1 10.3636 6.8248 0.1292 47 1 11.2252 8.7049 1.2110 48 1 10.9447 8.0119 2.8328 49 1 9.2961 12.2133 3.9577 50 1 7.2556 8.2503 1.9504 51 1 8.0094 8.3735 0.3323 52 1 6.2586 5.3471 1.6670 53 1 6.0984 6.7739 0.6138 54 1 5.9442 5.3441 -1.3704 55 1 4.7376 4.8042 -0.1765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277283124.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:25 Heat of formation + Delta-G solvation = -90.570813 kcal Electronic energy + Delta-G solvation = -30310.915196 eV Core-core repulsion = 26347.170066 eV Total energy + Delta-G solvation = -3963.745131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -41.41284 -40.05359 -39.03320 -38.09848 -35.66981 -35.32420 -33.87290 -32.24245 -31.28734 -29.85316 -29.02103 -28.16941 -26.70773 -26.15531 -24.90422 -24.12457 -22.46458 -22.23703 -21.28971 -20.84679 -19.84968 -19.52761 -18.29770 -17.47771 -17.09947 -16.95230 -16.78647 -16.53473 -16.35307 -15.86501 -15.62314 -15.22952 -15.17729 -14.92232 -14.80067 -14.50888 -14.31921 -14.11706 -13.91898 -13.85501 -13.51749 -13.27251 -13.18321 -12.99778 -12.95278 -12.91595 -12.43812 -12.31589 -12.25432 -12.16367 -12.00227 -11.88373 -11.82681 -11.64812 -11.49813 -11.39776 -11.31877 -11.09134 -10.95491 -10.68162 -10.59887 -10.57355 -9.58077 -9.07078 -8.65424 -5.45711 1.39973 1.48962 1.66795 1.71536 2.02648 2.54531 2.87738 3.12092 3.34299 3.54468 3.63751 3.77357 3.82522 3.89695 3.97314 4.05852 4.12287 4.23454 4.28054 4.29712 4.42287 4.45608 4.47291 4.48329 4.49854 4.52816 4.58257 4.61014 4.66602 4.72768 4.73408 4.78156 4.87633 4.88143 4.90679 4.93867 4.95186 4.99528 5.04321 5.07632 5.11536 5.19075 5.22747 5.30244 5.32973 5.37912 5.43119 5.55412 5.61483 5.65311 6.11260 6.27827 6.46900 6.83683 7.22892 7.48245 8.12151 8.87949 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025274 B = 0.001988 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.600301 B =14078.494975 C =14784.296646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.066 3.934 4 C -0.072 4.072 5 H 0.063 0.937 6 C -0.144 4.144 7 C -0.130 4.130 8 C 0.510 3.490 9 O -0.581 6.581 10 N -0.611 5.611 11 C 0.112 3.888 12 C -0.119 4.119 13 C -0.065 4.065 14 C -0.080 4.080 15 H 0.069 0.931 16 C -0.113 4.113 17 C 0.096 3.904 18 N -0.638 5.638 19 C -0.310 4.310 20 H 0.046 0.954 21 C -0.085 4.085 22 N -0.966 5.966 23 Si 1.113 2.887 24 H -0.285 1.285 25 H -0.314 1.314 26 H -0.254 1.254 27 C 0.138 3.862 28 C -0.130 4.130 29 C 0.108 3.892 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.022 0.978 48 H 0.028 0.972 49 H 0.246 0.754 50 H 0.034 0.966 51 H 0.031 0.969 52 H 0.062 0.938 53 H 0.080 0.920 54 H 0.085 0.915 55 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.542 -23.912 -11.730 31.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.010 4.010 4 C -0.091 4.091 5 H 0.081 0.919 6 C -0.202 4.202 7 C -0.169 4.169 8 C 0.300 3.700 9 O -0.461 6.461 10 N -0.344 5.344 11 C -0.010 4.010 12 C -0.157 4.157 13 C -0.084 4.084 14 C -0.099 4.099 15 H 0.087 0.913 16 C -0.151 4.151 17 C -0.029 4.029 18 N -0.365 5.365 19 C -0.439 4.439 20 H 0.064 0.936 21 C -0.277 4.277 22 N -0.611 5.611 23 Si 0.942 3.058 24 H -0.212 1.212 25 H -0.244 1.244 26 H -0.179 1.179 27 C 0.013 3.987 28 C -0.169 4.169 29 C -0.014 4.014 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.039 0.961 48 H 0.046 0.954 49 H 0.055 0.945 50 H 0.052 0.948 51 H 0.049 0.951 52 H 0.080 0.920 53 H 0.098 0.902 54 H 0.103 0.897 55 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.621 -24.156 -11.741 30.580 hybrid contribution -1.815 0.601 0.598 2.004 sum -16.437 -23.555 -11.143 30.809 Atomic orbital electron populations 1.22897 0.79606 1.03590 1.00914 1.87849 1.21292 1.29036 1.95618 1.22641 0.92395 0.84452 1.01562 1.20768 0.93327 0.95661 0.99340 0.91866 1.21810 1.01376 1.00540 0.96433 1.21703 0.90058 0.98634 1.06524 1.21088 0.90592 0.83348 0.74927 1.90659 1.75781 1.27562 1.52109 1.48280 1.07349 1.06869 1.71852 1.21572 0.79312 1.00760 0.99367 1.21880 1.01053 0.94019 0.98788 1.21019 0.94842 0.94047 0.98477 1.22264 0.94593 0.93626 0.99450 0.91275 1.22635 0.96482 0.94510 1.01435 1.22154 0.89219 0.93712 0.97770 1.44988 1.05177 1.15079 1.71303 1.20084 0.93939 0.92741 1.37096 0.93609 1.27131 1.05962 0.95509 0.99113 1.71011 1.26282 1.30206 1.33575 0.83323 0.72068 0.74909 0.75543 1.21237 1.24351 1.17885 1.21794 0.90606 0.90422 0.95856 1.21964 0.94833 1.00695 0.99362 1.21958 0.98701 0.80781 0.99962 0.93176 0.93002 0.89069 0.91873 0.91544 0.93011 0.92423 0.93261 0.86564 0.85980 0.90287 0.90685 0.89576 0.92561 0.89988 0.88877 0.89579 0.96089 0.95416 0.94479 0.94803 0.95107 0.91968 0.90160 0.89692 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -6.95 10.24 -148.98 -1.53 -8.47 16 3 C 0.07 0.80 5.32 71.98 0.38 1.18 16 4 C -0.07 -1.12 2.27 -10.79 -0.02 -1.15 16 5 H 0.06 1.28 7.96 -2.38 -0.02 1.26 16 6 C -0.14 -2.74 8.83 71.98 0.64 -2.10 16 7 C -0.13 -1.49 3.52 29.85 0.11 -1.38 16 8 C 0.51 9.61 7.42 87.66 0.65 10.26 16 9 O -0.58 -15.79 13.38 -3.03 -0.04 -15.83 16 10 N -0.61 -9.76 2.97 -818.95 -2.43 -12.20 16 11 C 0.11 1.91 6.43 86.36 0.56 2.46 16 12 C -0.12 -2.03 5.23 30.67 0.16 -1.87 16 13 C -0.06 -1.20 1.66 -10.77 -0.02 -1.22 16 14 C -0.08 -2.15 2.56 -9.40 -0.02 -2.17 16 15 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 16 C -0.11 -3.19 5.57 31.79 0.18 -3.01 16 17 C 0.10 3.95 4.61 86.73 0.40 4.35 16 18 N -0.64 -30.66 3.33 -691.96 -2.30 -32.97 16 19 C -0.31 -18.20 10.56 84.04 0.89 -17.32 16 20 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 21 C -0.08 -5.16 5.50 84.86 0.47 -4.69 16 22 N -0.97 -63.28 13.71 21.65 0.30 -62.98 16 23 Si 1.11 54.88 24.52 68.60 1.68 56.57 16 24 H -0.28 -13.18 6.82 99.48 0.68 -12.50 16 25 H -0.31 -15.95 7.11 99.48 0.71 -15.24 16 26 H -0.25 -11.07 5.41 99.48 0.54 -10.54 16 27 C 0.14 5.01 5.65 86.86 0.49 5.50 16 28 C -0.13 -2.05 5.18 30.66 0.16 -1.89 16 29 C 0.11 1.20 6.34 86.35 0.55 1.75 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 35 H 0.05 1.23 5.95 -2.39 -0.01 1.22 16 36 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 38 H 0.12 0.91 7.70 -2.39 -0.02 0.89 16 39 H 0.12 0.75 7.94 -2.39 -0.02 0.73 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.55 7.01 -2.39 -0.02 1.53 16 42 H 0.09 1.34 7.45 -2.39 -0.02 1.33 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.46 8.11 -2.39 -0.02 1.44 16 45 H 0.09 2.18 8.11 -2.39 -0.02 2.16 16 46 H 0.09 2.11 8.02 -2.39 -0.02 2.09 16 47 H 0.02 0.93 3.89 -2.39 -0.01 0.92 16 48 H 0.03 1.23 6.70 -2.39 -0.02 1.21 16 49 H 0.25 16.17 8.73 -92.70 -0.81 15.36 16 50 H 0.03 1.26 8.01 -2.39 -0.02 1.24 16 51 H 0.03 1.08 8.04 -2.38 -0.02 1.06 16 52 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.08 1.33 7.21 -2.38 -0.02 1.31 16 54 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 55 H 0.11 0.68 5.93 -2.39 -0.01 0.67 16 Total: -1.00 -79.31 407.34 3.07 -76.24 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.60 Total: 9.45 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 6.80 Total: -9.80 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -4.44 Total: -108.14 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.57 Total: -24.31 kcal Atomic # 14 Polarization: 54.88 SS G_CDS: 1.68 Total: 56.57 kcal Total: -79.31 3.07 -76.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277283124.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.335 kcal (2) G-P(sol) polarization free energy of solvation -79.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds