Wall clock time and date at job start Sat Apr 11 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00166 * 2 1 4 4 C 1.52999 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46858 * 305.00552 * 4 3 2 6 6 C 1.53001 * 109.47284 * 64.99662 * 4 3 2 7 7 C 1.52997 * 109.47319 * 185.00125 * 4 3 2 8 8 C 1.50695 * 109.47123 * 174.99800 * 7 4 3 9 9 O 1.21277 * 120.00109 * 359.97438 * 8 7 4 10 10 N 1.34774 * 120.00209 * 179.97438 * 8 7 4 11 11 C 1.47467 * 118.68505 * 0.02562 * 10 8 7 12 12 C 1.54003 * 112.20527 * 137.96482 * 11 10 8 13 13 C 1.50806 * 110.40661 * 319.23974 * 12 11 10 14 14 C 1.52848 * 109.44856 * 91.66832 * 13 12 11 15 15 C 1.46801 * 113.93992 * 275.82679 * 14 13 12 16 16 C 1.54716 * 112.87015 * 185.25027 * 15 14 13 17 17 C 1.54405 * 102.89743 * 86.50071 * 16 15 14 18 18 N 1.47061 * 107.28459 * 21.79288 * 17 16 15 19 19 C 1.36935 * 125.64045 * 180.81272 * 18 17 16 20 20 H 1.07990 * 120.00185 * 174.01933 * 19 18 17 21 21 C 1.38813 * 119.99860 * 354.01203 * 19 18 17 22 22 N 1.31623 * 119.99938 * 6.87936 * 21 19 18 23 23 Si 1.86797 * 120.00141 * 186.87944 * 21 19 18 24 24 H 1.48508 * 109.47163 * 94.98770 * 23 21 19 25 25 H 1.48500 * 109.47418 * 214.98526 * 23 21 19 26 26 H 1.48498 * 109.47270 * 334.99037 * 23 21 19 27 27 C 1.47515 * 108.71748 * 1.07557 * 18 17 16 28 28 C 1.44733 * 118.69489 * 179.97438 * 10 8 7 29 29 H 1.09003 * 109.47067 * 59.99933 * 1 2 3 30 30 H 1.08997 * 109.47633 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47311 * 299.99773 * 1 2 3 32 32 H 1.08993 * 109.47013 * 60.00325 * 3 2 1 33 33 H 1.09003 * 109.46899 * 299.99798 * 3 2 1 34 34 H 1.09000 * 109.47342 * 179.97438 * 6 4 3 35 35 H 1.09004 * 109.47240 * 300.00722 * 6 4 3 36 36 H 1.09000 * 109.46932 * 60.00431 * 6 4 3 37 37 H 1.08999 * 109.46853 * 54.99911 * 7 4 3 38 38 H 1.09004 * 109.46963 * 294.99969 * 7 4 3 39 39 H 1.09001 * 108.93638 * 17.26162 * 11 10 8 40 40 H 1.09006 * 108.93392 * 258.66350 * 11 10 8 41 41 H 1.09005 * 109.31350 * 198.95088 * 12 11 10 42 42 H 1.09001 * 109.31399 * 79.52470 * 12 11 10 43 43 H 1.08999 * 109.47346 * 331.66851 * 13 12 11 44 44 H 1.09008 * 109.47354 * 211.66278 * 13 12 11 45 45 H 1.09003 * 108.58712 * 154.67952 * 14 13 12 46 46 H 1.09003 * 108.58799 * 36.98528 * 14 13 12 47 47 H 1.09000 * 110.72727 * 328.14759 * 16 15 14 48 48 H 1.09001 * 110.72548 * 204.85012 * 16 15 14 49 49 H 1.09003 * 109.87675 * 262.37407 * 17 16 15 50 50 H 1.09002 * 109.87832 * 141.21500 * 17 16 15 51 51 H 0.97002 * 120.00111 * 179.97438 * 22 21 19 52 52 H 1.09002 * 110.37227 * 95.08472 * 27 18 17 53 53 H 1.09004 * 110.36983 * 217.42674 * 27 18 17 54 54 H 1.08996 * 109.52369 * 150.59036 * 28 10 8 55 55 H 1.09007 * 109.51822 * 30.40797 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8514 0.5681 0.8409 6 6 3.9952 0.5368 -1.3083 7 6 4.1574 2.5768 0.1251 8 6 5.6539 2.4491 0.2480 9 8 6.1720 1.3526 0.2367 10 7 6.4167 3.5535 0.3706 11 6 5.7565 4.8721 0.3816 12 6 6.3567 5.8147 1.4413 13 6 6.6409 5.0601 2.7157 14 6 8.0756 4.5337 2.6863 15 6 8.2271 3.2564 1.9788 16 6 9.6607 2.6824 2.0744 17 6 9.6265 1.8885 3.3983 18 7 8.2177 1.5809 3.6871 19 6 7.7580 0.9008 4.7831 20 1 6.6958 0.8084 4.9549 21 6 8.6573 0.3298 5.6731 22 7 9.9473 0.5551 5.5407 23 14 8.0366 -0.7583 7.0588 24 1 8.0967 -2.1807 6.6362 25 1 8.8869 -0.5628 8.2605 26 1 6.6329 -0.3967 7.3814 27 6 7.3824 2.1208 2.5977 28 6 7.8509 3.3980 0.4873 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 5.0819 0.4511 -1.3089 35 1 3.5520 -0.4551 -1.3979 36 1 3.6793 1.1532 -2.1498 37 1 3.7611 3.0731 1.0109 38 1 3.9144 3.1646 -0.7601 39 1 4.6956 4.7347 0.5906 40 1 5.8652 5.3303 -0.6015 41 1 5.6516 6.6197 1.6485 42 1 7.2846 6.2412 1.0603 43 1 5.9484 4.2231 2.8045 44 1 6.5159 5.7272 3.5686 45 1 8.4197 4.4054 3.7126 46 1 8.7085 5.2769 2.2012 47 1 10.3954 3.4860 2.1253 48 1 9.8683 2.0211 1.2332 49 1 10.0467 2.4917 4.2031 50 1 10.1933 0.9637 3.2906 51 1 10.5757 0.1565 6.1629 52 1 7.1821 1.3486 1.8549 53 1 6.4483 2.5166 2.9963 54 1 8.3474 4.2731 0.0680 55 1 8.1657 2.5055 -0.0535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278336621.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:42 Heat of formation + Delta-G solvation = -79.128280 kcal Electronic energy + Delta-G solvation = -32429.882187 eV Core-core repulsion = 28466.633242 eV Total energy + Delta-G solvation = -3963.248945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.93412 -39.88921 -38.87585 -37.53537 -35.67334 -35.04907 -34.21594 -32.38120 -30.54511 -29.60189 -28.17337 -27.85288 -27.20991 -26.39856 -25.79033 -24.69043 -22.40510 -21.78034 -21.41861 -19.91249 -19.31674 -18.90901 -18.26612 -17.49887 -17.07008 -16.88207 -16.71259 -16.49783 -16.09719 -15.94684 -15.70780 -15.18387 -15.00707 -14.81946 -14.50709 -14.19880 -14.13639 -13.93812 -13.87439 -13.66784 -13.22185 -13.09006 -13.02261 -12.90489 -12.84409 -12.63751 -12.52212 -12.41063 -12.15859 -12.03414 -12.00134 -11.89855 -11.80702 -11.70106 -11.62943 -11.56440 -11.22519 -11.17590 -11.09620 -10.69756 -10.55930 -10.46107 -9.37444 -8.80024 -7.87410 -5.19143 1.38054 1.42177 1.50127 1.77801 2.17029 2.46977 2.91534 3.30137 3.56512 3.64234 3.73440 3.91164 3.95487 4.04252 4.06404 4.11334 4.18777 4.24188 4.37500 4.46999 4.49791 4.50200 4.52435 4.58892 4.60590 4.63662 4.66790 4.70299 4.74713 4.78515 4.81439 4.85973 4.87566 4.97133 5.01615 5.07659 5.12769 5.17500 5.25490 5.28643 5.35486 5.36818 5.41152 5.42248 5.49778 5.56840 5.66324 5.70012 5.77924 5.88466 6.19939 6.31435 6.55617 7.10358 7.42038 7.79935 8.46492 9.23868 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008893 B = 0.004172 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.706622 B = 6710.055856 C = 8756.380659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.069 3.931 4 C -0.077 4.077 5 H 0.043 0.957 6 C -0.139 4.139 7 C -0.124 4.124 8 C 0.496 3.504 9 O -0.568 6.568 10 N -0.602 5.602 11 C 0.101 3.899 12 C -0.122 4.122 13 C -0.112 4.112 14 C -0.090 4.090 15 C -0.070 4.070 16 C -0.123 4.123 17 C 0.191 3.809 18 N -0.627 5.627 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.974 3.026 24 H -0.290 1.290 25 H -0.288 1.288 26 H -0.269 1.269 27 C 0.142 3.858 28 C 0.139 3.861 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.022 0.978 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.063 0.937 49 H 0.005 0.995 50 H -0.003 1.003 51 H 0.246 0.754 52 H 0.037 0.963 53 H 0.019 0.981 54 H 0.105 0.895 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.415 15.174 -17.087 28.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.007 4.007 4 C -0.096 4.096 5 H 0.061 0.939 6 C -0.196 4.196 7 C -0.163 4.163 8 C 0.286 3.714 9 O -0.447 6.447 10 N -0.334 5.334 11 C -0.020 4.020 12 C -0.160 4.160 13 C -0.149 4.149 14 C -0.128 4.128 15 C -0.072 4.072 16 C -0.161 4.161 17 C 0.066 3.934 18 N -0.353 5.353 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.259 4.259 22 N -0.599 5.599 23 Si 0.802 3.198 24 H -0.217 1.217 25 H -0.215 1.215 26 H -0.194 1.194 27 C 0.017 3.983 28 C 0.015 3.985 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.149 0.851 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.081 0.919 49 H 0.023 0.977 50 H 0.015 0.985 51 H 0.055 0.945 52 H 0.054 0.946 53 H 0.037 0.963 54 H 0.123 0.877 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.969 14.389 -16.941 27.369 hybrid contribution 0.252 -1.250 1.569 2.022 sum -15.717 13.139 -15.372 25.612 Atomic orbital electron populations 1.22899 0.79560 1.03507 1.01007 1.87876 1.21417 1.29229 1.95619 1.22619 0.92031 0.84385 1.01639 1.20786 0.93731 0.95933 0.99128 0.93861 1.21763 1.01253 1.00373 0.96241 1.21682 0.89996 0.98291 1.06366 1.21207 0.90788 0.83819 0.75588 1.90662 1.75487 1.28026 1.50555 1.47803 1.06430 1.07319 1.71859 1.22322 0.97774 0.81304 1.00608 1.21740 1.03011 0.97827 0.93419 1.21051 0.95387 0.99385 0.99113 1.20194 0.98322 0.95320 0.98934 1.20936 0.94742 0.95087 0.96470 1.22782 0.96810 0.99352 0.97206 1.20823 0.85152 0.94774 0.92673 1.44832 1.03135 1.65345 1.22014 1.19354 0.91821 1.25513 1.00100 0.91259 1.25619 0.95680 1.02297 1.02293 1.70210 1.01436 1.48574 1.39681 0.85128 0.77628 0.78692 0.78376 1.21723 1.21465 1.19354 1.22110 0.92588 0.94204 0.89360 1.21370 0.81127 1.02575 0.93412 0.92483 0.89321 0.93316 0.92213 0.90656 0.93317 0.93764 0.91196 0.87138 0.85076 0.88248 0.88788 0.88035 0.90470 0.93659 0.91909 0.95916 0.90066 0.89607 0.91875 0.97678 0.98485 0.94478 0.94570 0.96310 0.87689 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.80 10.24 -148.98 -1.53 -11.33 16 3 C 0.07 1.27 5.32 71.98 0.38 1.65 16 4 C -0.08 -1.83 2.27 -10.79 -0.02 -1.85 16 5 H 0.04 1.43 7.95 -2.39 -0.02 1.41 16 6 C -0.14 -3.48 8.83 71.98 0.64 -2.85 16 7 C -0.12 -2.27 3.50 29.85 0.10 -2.17 16 8 C 0.50 13.66 6.28 87.66 0.55 14.21 16 9 O -0.57 -21.94 10.64 -3.02 -0.03 -21.98 16 10 N -0.60 -13.69 2.07 -818.83 -1.70 -15.39 16 11 C 0.10 1.26 5.95 86.53 0.52 1.78 16 12 C -0.12 -1.64 5.68 30.22 0.17 -1.47 16 13 C -0.11 -2.67 5.43 29.83 0.16 -2.51 16 14 C -0.09 -2.76 4.14 28.62 0.12 -2.64 16 15 C -0.07 -2.46 0.49 -52.51 -0.03 -2.49 16 16 C -0.12 -4.89 5.91 31.66 0.19 -4.70 16 17 C 0.19 10.41 5.15 86.75 0.45 10.86 16 18 N -0.63 -35.97 3.40 -692.37 -2.35 -38.33 16 19 C -0.24 -14.85 10.26 84.03 0.86 -13.99 16 20 H 0.07 4.23 7.84 -2.92 -0.02 4.21 16 21 C -0.07 -4.09 5.48 84.86 0.47 -3.63 16 22 N -0.95 -61.37 10.36 21.65 0.22 -61.15 16 23 Si 0.97 49.56 29.56 68.60 2.03 51.59 16 24 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 25 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 26 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 27 C 0.14 6.59 4.71 86.68 0.41 6.99 16 28 C 0.14 3.78 4.45 87.21 0.39 4.17 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.50 5.95 -2.39 -0.01 1.49 16 35 H 0.04 1.19 7.82 -2.38 -0.02 1.18 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.65 7.41 -2.39 -0.02 1.63 16 38 H 0.13 1.35 8.03 -2.39 -0.02 1.34 16 39 H 0.10 0.86 5.82 -2.39 -0.01 0.85 16 40 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.08 0.93 7.34 -2.39 -0.02 0.92 16 43 H 0.04 1.31 5.54 -2.39 -0.01 1.29 16 44 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.02 0.88 7.91 -2.39 -0.02 0.86 16 46 H 0.08 1.97 7.41 -2.39 -0.02 1.95 16 47 H 0.09 2.91 8.03 -2.39 -0.02 2.89 16 48 H 0.06 2.45 7.64 -2.39 -0.02 2.43 16 49 H 0.01 0.30 7.55 -2.39 -0.02 0.28 16 50 H 0.00 -0.19 7.36 -2.39 -0.02 -0.21 16 51 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 52 H 0.04 1.88 4.88 -2.39 -0.01 1.87 16 53 H 0.02 0.88 6.10 -2.38 -0.01 0.87 16 54 H 0.11 2.09 8.09 -2.39 -0.02 2.07 16 55 H 0.06 1.94 6.89 -2.38 -0.02 1.92 16 Total: -1.00 -85.26 399.64 4.09 -81.17 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.85 Total: 12.40 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 6.60 Total: 3.01 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -3.83 Total: -114.86 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.56 Total: -33.31 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.03 Total: 51.59 kcal Total: -85.26 4.09 -81.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278336621.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.043 kcal (2) G-P(sol) polarization free energy of solvation -85.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds