Wall clock time and date at job start Sat Apr 11 2020 05:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86802 * 119.99707 * 2 1 4 4 H 1.48502 * 109.47258 * 275.41554 * 3 2 1 5 5 H 1.48499 * 109.47211 * 35.41318 * 3 2 1 6 6 H 1.48496 * 109.47213 * 155.41442 * 3 2 1 7 7 C 1.39883 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99902 * 341.71269 * 7 2 1 9 9 C 1.41213 * 120.00316 * 161.71599 * 7 2 1 10 10 C 1.40829 * 120.17607 * 330.16615 * 9 7 2 11 11 C 1.36447 * 119.80952 * 179.97438 * 10 9 7 12 12 C 1.39307 * 120.18200 * 359.97438 * 11 10 9 13 13 O 1.35683 * 119.81419 * 180.02562 * 12 11 10 14 14 C 1.42895 * 116.99760 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.46925 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.46839 * 54.99724 * 15 14 13 17 17 O 1.42895 * 109.47202 * 295.00065 * 15 14 13 18 18 C 1.52996 * 109.46923 * 174.99912 * 15 14 13 19 19 N 1.46904 * 109.47000 * 185.00288 * 18 15 14 20 20 C 1.46896 * 111.00156 * 180.02562 * 19 18 15 21 21 H 1.09003 * 108.85259 * 327.87284 * 20 19 18 22 22 C 1.52938 * 108.88707 * 209.43536 * 20 19 18 23 23 C 1.55156 * 108.96125 * 209.10135 * 22 20 19 24 24 S 1.83991 * 100.90900 * 41.43911 * 23 22 20 25 25 O 1.42101 * 109.47033 * 211.59508 * 24 23 22 26 26 C 1.53703 * 108.89221 * 86.44982 * 20 19 18 27 27 C 1.39312 * 120.36872 * 0.27545 * 12 11 10 28 28 C 1.36435 * 120.18243 * 359.44323 * 27 12 11 29 29 H 0.97002 * 120.00194 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.09952 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.90419 * 180.02562 * 11 10 9 32 32 H 1.08998 * 109.47564 * 59.99865 * 14 13 12 33 33 H 1.08999 * 109.47249 * 299.99667 * 14 13 12 34 34 H 0.96701 * 113.99873 * 300.00128 * 17 15 14 35 35 H 1.08998 * 109.47217 * 304.99659 * 18 15 14 36 36 H 1.08997 * 109.47453 * 65.00185 * 18 15 14 37 37 H 1.00901 * 111.00142 * 56.04578 * 19 18 15 38 38 H 1.09004 * 109.60715 * 329.02979 * 22 20 19 39 39 H 1.08999 * 109.60557 * 89.17314 * 22 20 19 40 40 H 1.08999 * 111.13314 * 283.52763 * 23 22 20 41 41 H 1.09001 * 111.13061 * 159.34728 * 23 22 20 42 42 H 1.09004 * 110.34429 * 242.49417 * 26 20 19 43 43 H 1.09000 * 110.33825 * 4.75146 * 26 20 19 44 44 H 1.08004 * 119.90497 * 179.70410 * 27 12 11 45 45 H 1.08001 * 120.09650 * 180.27627 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3759 2.1126 -1.3938 5 1 1.5021 2.6170 0.8113 6 1 3.5929 1.4100 0.5825 7 6 2.0083 -1.2114 0.0005 8 1 1.5093 -2.1230 0.2945 9 6 3.3670 -1.2424 -0.3831 10 6 3.8605 -0.3106 -1.3166 11 6 5.1747 -0.3471 -1.6816 12 6 6.0276 -1.3022 -1.1331 13 8 7.3333 -1.3314 -1.5010 14 6 8.1538 -2.3361 -0.9017 15 6 9.5825 -2.2131 -1.4355 16 1 9.9462 -1.1990 -1.2697 17 8 9.5944 -2.5006 -2.8352 18 6 10.4877 -3.2057 -0.7032 19 7 11.8793 -3.0056 -1.1292 20 6 12.7792 -3.9440 -0.4455 21 1 12.3856 -4.1473 0.5504 22 6 14.1577 -3.2962 -0.3071 23 6 15.2392 -4.4088 -0.3006 24 16 14.5997 -5.5237 -1.6171 25 8 14.9531 -6.8662 -1.3137 26 6 12.8245 -5.2588 -1.2405 27 6 5.5463 -2.2309 -0.2130 28 6 4.2362 -2.2044 0.1669 29 1 -0.4850 0.8400 0.0004 30 1 3.2006 0.4308 -1.7424 31 1 5.5548 0.3671 -2.3970 32 1 7.7585 -3.3219 -1.1466 33 1 8.1573 -2.2047 0.1803 34 1 9.2824 -3.3885 -3.0570 35 1 10.4099 -3.0436 0.3718 36 1 10.1778 -4.2234 -0.9405 37 1 12.1698 -2.0511 -0.9789 38 1 14.3312 -2.6226 -1.1463 39 1 14.2057 -2.7342 0.6255 40 1 15.2737 -4.9176 0.6627 41 1 16.2172 -4.0076 -0.5663 42 1 12.4386 -6.0802 -0.6367 43 1 12.2516 -5.1637 -2.1629 44 1 6.2131 -2.9712 0.2040 45 1 3.8656 -2.9222 0.8837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579947927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:13 Heat of formation + Delta-G solvation = -130.816885 kcal Electronic energy + Delta-G solvation = -25982.307008 eV Core-core repulsion = 22090.184697 eV Total energy + Delta-G solvation = -3892.122312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78543 -39.39184 -38.37119 -37.34770 -36.78235 -35.24467 -33.95816 -32.07021 -31.72526 -30.89441 -29.62327 -27.04253 -26.18534 -24.63360 -23.31963 -22.46564 -22.35827 -21.32564 -19.38400 -19.00352 -18.50286 -17.69127 -17.55950 -17.13808 -16.95643 -16.82042 -16.15106 -15.74760 -15.72285 -15.48655 -15.29296 -15.09857 -14.84401 -14.68750 -14.54356 -14.18230 -14.16146 -13.85158 -13.62119 -13.44543 -13.02838 -12.86353 -12.70214 -12.66080 -12.59912 -12.34310 -12.23035 -11.97236 -11.85597 -11.74387 -11.64009 -11.30338 -11.02300 -10.94096 -10.83456 -9.72242 -9.47002 -9.26473 -9.01743 -8.86871 -6.38930 0.74474 0.76888 0.83436 1.27374 1.39887 1.47703 1.49213 2.13112 2.32402 2.58349 2.81146 3.16404 3.46089 3.57475 3.67642 3.86935 3.92942 4.04677 4.06888 4.15468 4.18189 4.20754 4.25202 4.31762 4.44671 4.47308 4.60026 4.62846 4.68876 4.81731 4.86487 4.94160 4.98431 5.06698 5.11931 5.15878 5.16809 5.40966 5.53423 5.71201 5.87826 5.94550 6.09759 6.31107 6.46598 6.58322 6.80609 6.91451 6.95419 8.22182 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.035369 B = 0.001688 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.452943 B =16584.378543 C =16801.109432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.046 3.954 3 Si 0.961 3.039 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.485 4.485 8 H 0.056 0.944 9 C 0.045 3.955 10 C -0.212 4.212 11 C -0.113 4.113 12 C 0.014 3.986 13 O -0.324 6.324 14 C 0.024 3.976 15 C 0.127 3.873 16 H 0.103 0.897 17 O -0.556 6.556 18 C 0.037 3.963 19 N -0.668 5.668 20 C 0.099 3.901 21 H 0.038 0.962 22 C -0.114 4.114 23 C -0.414 4.414 24 S 1.259 4.741 25 O -0.937 6.937 26 C -0.414 4.414 27 C -0.156 4.156 28 C -0.185 4.185 29 H 0.292 0.708 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.383 0.617 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.355 0.645 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.148 0.852 42 H 0.069 0.931 43 H 0.144 0.856 44 H 0.136 0.864 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.613 -2.709 -2.782 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.167 4.167 3 Si 0.785 3.215 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.043 3.957 10 C -0.231 4.231 11 C -0.131 4.131 12 C -0.030 4.030 13 O -0.240 6.240 14 C -0.053 4.053 15 C 0.067 3.933 16 H 0.121 0.879 17 O -0.362 6.362 18 C -0.093 4.093 19 N -0.301 5.301 20 C -0.012 4.012 21 H 0.056 0.944 22 C -0.152 4.152 23 C -0.554 4.554 24 S 1.461 4.539 25 O -0.933 6.933 26 C -0.553 4.553 27 C -0.174 4.174 28 C -0.204 4.204 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.142 0.858 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.232 0.768 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.175 0.825 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.166 0.834 42 H 0.088 0.912 43 H 0.162 0.838 44 H 0.154 0.846 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 31.100 -2.942 -4.231 31.524 hybrid contribution -1.638 -0.724 3.511 3.941 sum 29.462 -3.665 -0.721 29.698 Atomic orbital electron populations 1.69754 1.09048 1.31243 1.38080 1.26770 0.95317 1.04035 0.90618 0.85550 0.79569 0.76881 0.79522 1.18297 1.20359 1.17844 1.19339 0.94497 0.95571 1.42148 0.92608 1.17873 0.93052 0.93175 0.91629 1.20729 0.95670 1.04012 1.02717 1.19962 0.92404 0.99148 1.01618 1.18702 0.83801 0.99461 1.01065 1.85905 1.17442 1.54336 1.66280 1.23607 0.91869 0.91485 0.98292 1.21750 0.89835 1.00022 0.81719 0.87941 1.86608 1.88645 1.38617 1.22371 1.22520 0.89338 0.99901 0.97572 1.60495 1.00369 1.09174 1.60050 1.21578 0.94132 0.91019 0.94515 0.94355 1.22138 0.89358 0.97671 1.06078 1.28020 1.06954 1.08407 1.11987 1.70400 0.87185 0.87123 1.09165 1.92995 1.79635 1.35697 1.84965 1.27982 1.18738 1.00711 1.07869 1.20850 0.96460 1.00077 1.00037 1.20850 0.93316 1.02941 1.03322 0.89761 0.87788 0.85814 0.91604 0.91289 0.76801 0.93313 0.89929 0.82452 0.86125 0.89457 0.90707 0.83352 0.91174 0.83834 0.84586 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.24 13.93 21.82 0.30 -46.94 16 2 C 0.05 2.49 5.40 85.23 0.46 2.95 16 3 Si 0.96 42.96 24.52 68.60 1.68 44.65 16 4 H -0.26 -10.88 6.71 99.48 0.67 -10.22 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.25 -11.62 6.87 99.48 0.68 -10.94 16 7 C -0.49 -27.34 9.56 23.40 0.22 -27.11 16 8 H 0.06 3.37 8.06 -2.91 -0.02 3.34 16 9 C 0.05 2.30 5.10 -21.28 -0.11 2.19 16 10 C -0.21 -10.10 7.12 22.49 0.16 -9.94 16 11 C -0.11 -4.79 9.92 22.11 0.22 -4.57 16 12 C 0.01 0.54 6.71 22.79 0.15 0.70 16 13 O -0.32 -10.74 10.09 -85.37 -0.86 -11.61 16 14 C 0.02 0.53 4.36 71.98 0.31 0.85 16 15 C 0.13 2.11 3.43 30.60 0.10 2.22 16 16 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 17 O -0.56 -10.80 13.25 -144.34 -1.91 -12.71 16 18 C 0.04 0.41 5.09 86.30 0.44 0.85 16 19 N -0.67 -5.79 6.05 -490.46 -2.97 -8.76 16 20 C 0.10 0.80 3.01 45.13 0.14 0.94 16 21 H 0.04 0.40 7.72 -2.39 -0.02 0.38 16 22 C -0.11 -0.42 5.64 31.31 0.18 -0.24 16 23 C -0.41 -2.54 7.51 72.72 0.55 -1.99 16 24 S 1.26 12.26 14.63 -56.49 -0.83 11.43 16 25 O -0.94 -24.26 18.15 -148.98 -2.70 -26.97 16 26 C -0.41 -4.29 6.95 72.22 0.50 -3.78 16 27 C -0.16 -5.97 8.96 22.11 0.20 -5.77 16 28 C -0.18 -8.33 9.74 22.48 0.22 -8.11 16 29 H 0.29 14.53 8.30 -92.71 -0.77 13.76 16 30 H 0.10 4.94 4.73 -2.91 -0.01 4.93 16 31 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 32 H 0.07 1.37 7.64 -2.39 -0.02 1.35 16 33 H 0.07 1.43 7.66 -2.39 -0.02 1.41 16 34 H 0.38 5.24 9.05 -74.06 -0.67 4.57 16 35 H 0.05 0.52 8.04 -2.39 -0.02 0.50 16 36 H 0.08 0.93 8.05 -2.39 -0.02 0.91 16 37 H 0.35 2.26 8.19 -89.69 -0.73 1.52 16 38 H 0.12 -0.08 7.93 -2.38 -0.02 -0.10 16 39 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.14 1.25 7.89 -2.39 -0.02 1.23 16 44 H 0.14 4.13 6.27 -2.91 -0.02 4.11 16 45 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -78.63 376.15 -3.99 -82.61 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.45 Total: 19.12 kcal Atomic # 6 Polarization: -54.57 SS G_CDS: 3.74 Total: -50.82 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -2.66 Total: -55.70 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -5.48 Total: -51.29 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.68 Total: 44.65 kcal Atomic # 16 Polarization: 12.26 SS G_CDS: -0.83 Total: 11.43 kcal Total: -78.63 -3.99 -82.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579947927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.204 kcal (2) G-P(sol) polarization free energy of solvation -78.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds