Wall clock time and date at job start Sat Apr 11 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00200 * 2 1 4 4 H 1.48500 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47263 * 299.99975 * 3 2 1 6 6 H 1.48500 * 109.47005 * 60.00184 * 3 2 1 7 7 C 1.37879 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99647 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00200 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46943 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46635 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.46899 * 179.97438 * 11 10 9 13 13 O 1.42110 * 110.54263 * 68.37372 * 12 11 10 14 14 O 1.42098 * 110.54526 * 291.62731 * 12 11 10 15 15 N 1.65596 * 104.45297 * 180.02562 * 12 11 10 16 16 C 1.46924 * 120.53996 * 262.30362 * 15 12 11 17 17 C 1.53432 * 107.79958 * 224.69504 * 16 15 12 18 18 H 1.09000 * 109.57429 * 56.75504 * 17 16 15 19 19 C 1.52999 * 109.57345 * 177.00393 * 17 16 15 20 20 O 1.42907 * 109.46956 * 184.99555 * 19 17 16 21 21 C 1.52849 * 108.85209 * 296.81891 * 17 16 15 22 22 C 1.50599 * 110.49158 * 51.32168 * 21 17 16 23 23 C 1.38501 * 118.93264 * 159.54758 * 22 21 17 24 24 C 1.38119 * 120.30629 * 179.58158 * 23 22 21 25 25 C 1.38307 * 120.16229 * 0.02562 * 24 23 22 26 26 C 1.38019 * 119.91252 * 0.09271 * 25 24 23 27 27 C 1.38607 * 121.50037 * 339.32713 * 22 21 17 28 28 H 0.97002 * 119.99865 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47110 * 59.99666 * 9 7 2 30 30 H 1.08997 * 109.47035 * 299.99502 * 9 7 2 31 31 H 1.09003 * 109.46767 * 60.00019 * 10 9 7 32 32 H 1.08997 * 109.47026 * 299.99725 * 10 9 7 33 33 H 1.09003 * 109.47027 * 60.00187 * 11 10 9 34 34 H 1.08997 * 109.47286 * 299.99685 * 11 10 9 35 35 H 1.08992 * 109.80125 * 105.11712 * 16 15 12 36 36 H 1.09007 * 109.84301 * 344.28990 * 16 15 12 37 37 H 1.08998 * 109.47099 * 65.00284 * 19 17 16 38 38 H 1.08994 * 109.47436 * 305.00164 * 19 17 16 39 39 H 0.96699 * 113.99829 * 180.02562 * 20 19 17 40 40 H 1.08994 * 109.30457 * 171.64093 * 21 17 16 41 41 H 1.09003 * 109.29915 * 291.02091 * 21 17 16 42 42 H 1.08001 * 119.84213 * 359.58710 * 23 22 21 43 43 H 1.08004 * 119.91931 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.04486 * 180.02562 * 25 24 23 45 45 H 1.07999 * 119.98896 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 16 2.6588 -6.3659 0.0004 13 8 3.3565 -6.4262 1.2370 14 8 3.3547 -6.4264 -1.2370 15 7 1.7085 -7.7221 0.0005 16 6 1.4193 -8.4310 1.2545 17 6 1.5895 -9.9334 0.9938 18 1 2.5942 -10.1275 0.6185 19 6 1.3701 -10.7075 2.2952 20 8 1.6426 -12.0932 2.0769 21 6 0.5581 -10.3745 -0.0445 22 6 0.6131 -9.4802 -1.2550 23 6 0.0912 -9.9407 -2.4524 24 6 0.1189 -9.1409 -3.5782 25 6 0.6691 -7.8735 -3.5169 26 6 1.1936 -7.4076 -2.3282 27 6 1.1680 -8.2116 -1.1936 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6043 0.8906 32 1 2.8718 -3.6044 -0.8895 33 1 0.8531 -5.0450 -0.8886 34 1 0.8537 -5.0446 0.8914 35 1 0.3961 -8.2243 1.5679 36 1 2.1149 -8.1099 2.0299 37 1 0.3365 -10.5873 2.6196 38 1 2.0394 -10.3223 3.0644 39 1 1.5233 -12.6459 2.8614 40 1 0.7661 -11.4012 -0.3454 41 1 -0.4385 -10.3257 0.3943 42 1 -0.3394 -10.9297 -2.5061 43 1 -0.2902 -9.5061 -4.5086 44 1 0.6894 -7.2495 -4.3982 45 1 1.6240 -6.4183 -2.2790 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589916276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:13 Heat of formation + Delta-G solvation = -131.534439 kcal Electronic energy + Delta-G solvation = -27720.774901 eV Core-core repulsion = 23828.621474 eV Total energy + Delta-G solvation = -3892.153427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34450 -38.84011 -38.17882 -37.34097 -37.02117 -36.54303 -34.74618 -34.22173 -31.97108 -30.79239 -29.74840 -26.89471 -26.31508 -25.65093 -24.02545 -22.89248 -22.33047 -20.97559 -20.14151 -19.08093 -18.62741 -18.53183 -17.73282 -17.39245 -17.11293 -16.87206 -16.53171 -16.30482 -15.87398 -15.25508 -15.23849 -14.97160 -14.74517 -14.54852 -14.46129 -14.12639 -14.04411 -13.96863 -13.60303 -13.51358 -13.40114 -13.19858 -13.06404 -12.81016 -12.69935 -12.64703 -12.43882 -12.27294 -12.16104 -11.82824 -11.65276 -11.61718 -11.48766 -11.36623 -11.01139 -10.82395 -10.60123 -9.69001 -8.99334 -8.24680 -6.35850 -1.08197 0.40220 0.44929 1.30101 1.38722 1.39572 1.52711 2.38004 2.50685 2.81824 2.88626 3.09075 3.25456 3.29010 3.62167 3.70166 3.75699 3.81981 3.94324 4.10021 4.20191 4.28891 4.31697 4.45329 4.46299 4.48847 4.53844 4.59454 4.62614 4.69808 4.83110 4.85038 4.86358 4.99285 5.03761 5.14975 5.21840 5.32129 5.42178 5.57713 5.59051 5.61961 5.63583 5.76503 6.10734 6.16463 6.79572 6.96415 7.33691 8.87068 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002911 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.901433 B = 9616.373960 C =10586.703874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.033 3.967 10 C -0.105 4.105 11 C -0.602 4.602 12 S 2.609 3.391 13 O -0.970 6.970 14 O -0.972 6.972 15 N -0.937 5.937 16 C 0.099 3.901 17 C -0.100 4.100 18 H 0.063 0.937 19 C 0.087 3.913 20 O -0.590 6.590 21 C -0.060 4.060 22 C -0.123 4.123 23 C -0.091 4.091 24 C -0.144 4.144 25 C -0.096 4.096 26 C -0.197 4.197 27 C 0.161 3.839 28 H 0.265 0.735 29 H 0.003 0.997 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.400 0.600 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.141 0.859 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 -26.119 1.227 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.590 4.590 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.144 4.144 11 C -0.734 4.734 12 S 2.709 3.291 13 O -0.960 6.960 14 O -0.962 6.962 15 N -0.761 5.761 16 C -0.024 4.024 17 C -0.120 4.120 18 H 0.081 0.919 19 C 0.008 3.992 20 O -0.399 6.399 21 C -0.096 4.096 22 C -0.127 4.127 23 C -0.109 4.109 24 C -0.163 4.163 25 C -0.115 4.115 26 C -0.219 4.219 27 C 0.066 3.934 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.024 0.976 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.250 0.750 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.171 0.829 43 H 0.169 0.831 44 H 0.159 0.841 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.992 -25.783 0.750 25.871 hybrid contribution -0.245 1.419 0.435 1.504 sum -2.237 -24.364 1.185 24.496 Atomic orbital electron populations 1.70076 1.07630 1.27884 1.51316 1.25931 0.95813 1.03229 0.94528 0.85425 0.79068 0.78808 0.77946 1.18780 1.20222 1.20142 1.21741 0.93741 0.92387 1.51111 0.92115 1.18949 0.93915 0.91642 0.96064 1.21346 0.98735 0.91948 1.02360 1.30526 1.16240 1.13212 1.13433 1.05077 0.75505 0.75189 0.73329 1.93528 1.70642 1.86132 1.45720 1.93568 1.71384 1.85817 1.45440 1.55636 1.65592 1.42447 1.12412 1.22034 1.04622 0.91944 0.83833 1.21355 1.00459 0.93137 0.97064 0.91860 1.22073 1.01071 0.81402 0.94635 1.86415 1.92778 1.18901 1.41822 1.20371 0.99702 0.98141 0.91417 1.19783 1.02496 0.92599 0.97862 1.21303 0.97843 1.00731 0.91033 1.21393 1.01102 0.93959 0.99847 1.21199 0.96408 0.97009 0.96835 1.21389 1.05295 1.00974 0.94217 1.17472 0.97104 0.94226 0.84630 0.92586 0.97874 0.97641 0.91119 0.91414 0.83952 0.83033 0.87443 0.87356 0.90708 0.92282 0.75004 0.89216 0.88621 0.82860 0.83101 0.84135 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.68 4.97 29.85 0.15 1.83 16 10 C -0.10 -4.28 5.16 30.60 0.16 -4.12 16 11 C -0.60 -19.05 5.98 71.98 0.43 -18.62 16 12 S 2.61 82.03 4.81 -56.49 -0.27 81.76 16 13 O -0.97 -33.70 16.40 -127.65 -2.09 -35.80 16 14 O -0.97 -36.06 15.05 -127.65 -1.92 -37.98 16 15 N -0.94 -24.14 3.20 -337.68 -1.08 -25.22 16 16 C 0.10 1.91 5.75 86.44 0.50 2.41 16 17 C -0.10 -1.76 2.59 -10.70 -0.03 -1.79 16 18 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 19 C 0.09 1.01 6.43 71.98 0.46 1.47 16 20 O -0.59 -7.49 13.38 -148.98 -1.99 -9.49 16 21 C -0.06 -0.97 4.90 29.77 0.15 -0.82 16 22 C -0.12 -2.62 5.76 -19.75 -0.11 -2.74 16 23 C -0.09 -1.62 9.66 22.30 0.22 -1.40 16 24 C -0.14 -2.66 10.04 22.26 0.22 -2.43 16 25 C -0.10 -2.22 10.05 22.23 0.22 -2.00 16 26 C -0.20 -5.55 8.32 22.42 0.19 -5.37 16 27 C 0.16 4.25 6.22 38.14 0.24 4.48 16 28 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.14 4.19 7.09 -2.39 -0.02 4.17 16 34 H 0.15 4.12 8.14 -2.39 -0.02 4.10 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.11 2.10 6.70 -2.38 -0.02 2.09 16 37 H 0.07 0.54 8.11 -2.39 -0.02 0.52 16 38 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.40 1.36 9.12 -74.06 -0.68 0.68 16 40 H 0.09 1.40 8.04 -2.39 -0.02 1.38 16 41 H 0.10 1.19 8.10 -2.39 -0.02 1.17 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 45 H 0.12 3.64 4.60 -2.91 -0.01 3.63 16 Total: -1.00 -77.47 374.47 -1.24 -78.71 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.32 Total: 16.70 kcal Atomic # 6 Polarization: -63.01 SS G_CDS: 3.48 Total: -59.52 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -0.79 Total: -80.49 kcal Atomic # 8 Polarization: -77.26 SS G_CDS: -6.01 Total: -83.27 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 82.03 SS G_CDS: -0.27 Total: 81.76 kcal Total: -77.47 -1.24 -78.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589916276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.821 kcal (2) G-P(sol) polarization free energy of solvation -77.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds