Wall clock time and date at job start Sat Apr 11 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86802 * 119.99460 * 2 1 4 4 H 1.48503 * 109.46799 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47223 * 299.99724 * 3 2 1 6 6 H 1.48496 * 109.47086 * 60.00258 * 3 2 1 7 7 C 1.39940 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99816 * 162.27538 * 7 2 1 9 9 C 1.41396 * 120.00060 * 342.27198 * 7 2 1 10 10 C 1.40725 * 120.24634 * 335.24831 * 9 7 2 11 11 C 1.37596 * 119.74735 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.25041 * 359.97438 * 11 10 9 13 13 C 1.38615 * 120.49708 * 0.02902 * 12 11 10 14 14 S 1.76195 * 119.87255 * 179.97438 * 13 12 11 15 15 O 1.42109 * 106.39950 * 203.53632 * 14 13 12 16 16 O 1.42099 * 106.40582 * 336.44980 * 14 13 12 17 17 N 1.65591 * 107.22219 * 89.99440 * 14 13 12 18 18 C 1.46505 * 120.00052 * 64.99730 * 17 14 13 19 19 C 1.52999 * 109.47103 * 164.99940 * 18 17 14 20 20 H 1.09004 * 109.47279 * 55.00095 * 19 18 17 21 21 C 1.52994 * 109.47594 * 295.00185 * 19 18 17 22 22 C 1.52999 * 109.47594 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.46992 * 59.99630 * 22 21 19 24 24 C 1.52998 * 109.47528 * 300.00352 * 23 22 21 25 25 C 1.52999 * 109.46992 * 174.99815 * 19 18 17 26 26 H 1.08995 * 109.47163 * 60.00797 * 25 19 18 27 27 O 1.42896 * 109.47454 * 300.00327 * 25 19 18 28 28 C 1.37632 * 120.25012 * 0.24384 * 13 12 11 29 29 H 0.96998 * 120.00413 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.13097 * 359.97438 * 10 9 7 31 31 H 1.07998 * 119.87800 * 180.02562 * 11 10 9 32 32 H 1.08003 * 119.75267 * 179.97438 * 12 11 10 33 33 H 0.97005 * 120.00437 * 244.99608 * 17 14 13 34 34 H 1.08995 * 109.47019 * 285.00246 * 18 17 14 35 35 H 1.08994 * 109.47216 * 45.00323 * 18 17 14 36 36 H 1.09007 * 109.47204 * 300.00039 * 21 19 18 37 37 H 1.09000 * 109.47392 * 59.99579 * 21 19 18 38 38 H 1.08995 * 109.47256 * 300.00106 * 22 21 19 39 39 H 1.09004 * 109.47421 * 180.02562 * 22 21 19 40 40 H 1.08997 * 109.47217 * 179.97438 * 23 22 21 41 41 H 1.09007 * 109.46812 * 60.00570 * 23 22 21 42 42 H 1.09002 * 109.46620 * 300.00256 * 24 23 22 43 43 H 1.08991 * 109.47100 * 180.02562 * 24 23 22 44 44 H 0.96701 * 114.00533 * 180.02562 * 27 25 19 45 45 H 1.08005 * 120.13291 * 179.71348 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0496 -1.2341 -0.2842 9 6 1.3515 -2.4072 0.3739 10 6 0.2232 -2.3636 1.2137 11 6 -0.4075 -3.5331 1.5711 12 6 0.0644 -4.7514 1.1066 13 6 1.1749 -4.8063 0.2789 14 16 1.7609 -6.3633 -0.3013 15 8 3.1335 -6.1815 -0.6214 16 8 1.3018 -7.3362 0.6271 17 7 0.9852 -6.6777 -1.7301 18 6 1.2202 -5.8209 -2.8951 19 6 0.7019 -6.5188 -4.1541 20 1 -0.3456 -6.7868 -4.0160 21 6 1.5225 -7.7844 -4.4104 22 6 1.0046 -8.4819 -5.6698 23 6 1.1363 -7.5376 -6.8664 24 6 0.3157 -6.2720 -6.6103 25 6 0.8331 -5.5748 -5.3511 26 1 1.8805 -5.3069 -5.4894 27 8 0.0667 -4.3928 -5.1118 28 6 1.8249 -3.6496 -0.0868 29 1 -0.4851 0.8400 0.0004 30 1 -0.1459 -1.4158 1.5771 31 1 -1.2739 -3.5021 2.2152 32 1 -0.4366 -5.6645 1.3924 33 1 0.3752 -7.4290 -1.7958 34 1 0.6957 -4.8748 -2.7620 35 1 2.2888 -5.6326 -2.9980 36 1 2.5700 -7.5164 -4.5486 37 1 1.4290 -8.4569 -3.5576 38 1 -0.0429 -8.7498 -5.5321 39 1 1.5890 -9.3838 -5.8520 40 1 0.7678 -8.0347 -7.7637 41 1 2.1840 -7.2698 -7.0042 42 1 -0.7318 -6.5400 -6.4725 43 1 0.4092 -5.5996 -7.4630 44 1 0.1032 -3.7479 -5.8314 45 1 2.6928 -3.6949 -0.7281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590763628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:22 Heat of formation + Delta-G solvation = -157.591225 kcal Electronic energy + Delta-G solvation = -27865.780875 eV Core-core repulsion = 23972.497541 eV Total energy + Delta-G solvation = -3893.283334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.31651 -39.44429 -38.26703 -36.92493 -36.74554 -35.97119 -35.65948 -31.91486 -31.71077 -31.57986 -30.49030 -27.34480 -26.24394 -23.68736 -23.42129 -22.83228 -22.25789 -20.98725 -20.48544 -19.58995 -18.50866 -18.14798 -17.75055 -17.26277 -16.96304 -16.49888 -16.16549 -15.95579 -15.62908 -15.22607 -15.13159 -15.03060 -14.57002 -14.34450 -14.30923 -13.88993 -13.71026 -13.51581 -13.34249 -13.20392 -13.06046 -13.04335 -12.95987 -12.80337 -12.65351 -12.60946 -12.34780 -12.20182 -11.95281 -11.57206 -11.55166 -11.47383 -11.31840 -11.14594 -11.03460 -10.69899 -10.36625 -9.85661 -9.55734 -8.72599 -6.44655 -0.48928 0.40481 0.84065 1.37651 1.44849 1.53019 2.12532 2.18281 2.55086 2.77964 3.29997 3.43032 3.52197 3.63343 3.78865 4.02905 4.18931 4.25638 4.29134 4.31601 4.43122 4.43814 4.44194 4.52232 4.64515 4.72882 4.83228 4.88848 4.91855 5.01944 5.04802 5.09781 5.20479 5.20871 5.25153 5.28313 5.33747 5.37778 5.41072 5.56162 5.56272 5.88232 5.93783 6.09115 6.13513 6.52540 6.80099 6.84862 6.94534 8.25710 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010849 B = 0.003834 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.267324 B = 7300.731881 C = 9011.027652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.064 3.936 10 C -0.142 4.142 11 C -0.124 4.124 12 C -0.151 4.151 13 C -0.640 4.640 14 S 2.721 3.279 15 O -0.992 6.992 16 O -0.988 6.988 17 N -1.101 6.101 18 C 0.123 3.877 19 C -0.078 4.078 20 H 0.085 0.915 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.143 4.143 25 C 0.106 3.894 26 H 0.059 0.941 27 O -0.586 6.586 28 C -0.144 4.144 29 H 0.292 0.708 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.426 0.574 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.392 0.608 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 -10.396 -13.929 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.526 4.526 8 H 0.097 0.903 9 C 0.061 3.939 10 C -0.162 4.162 11 C -0.143 4.143 12 C -0.172 4.172 13 C -0.728 4.728 14 S 2.814 3.186 15 O -0.982 6.982 16 O -0.978 6.978 17 N -0.863 5.863 18 C -0.003 4.003 19 C -0.099 4.099 20 H 0.103 0.897 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.181 4.181 25 C 0.046 3.954 26 H 0.077 0.923 27 O -0.394 6.394 28 C -0.165 4.165 29 H 0.103 0.897 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.241 0.759 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.660 -10.950 -12.978 16.993 hybrid contribution -0.391 1.677 -0.274 1.743 sum -1.052 -9.273 -13.253 16.209 Atomic orbital electron populations 1.69829 1.08944 1.30916 1.34966 1.26739 0.95509 1.04455 0.90989 0.85147 0.79392 0.76011 0.79148 1.18301 1.18726 1.18742 1.19871 0.98475 0.92236 1.41979 0.90328 1.18040 0.92537 0.92981 0.90341 1.21636 0.98435 0.97581 0.98499 1.21143 0.99889 0.92706 1.00561 1.20458 0.97032 0.98041 1.01629 1.30267 1.09147 1.19388 1.14016 1.00715 0.72920 0.72782 0.72231 1.93495 1.33348 1.86996 1.84326 1.93493 1.82436 1.59599 1.62307 1.55127 1.63773 1.41829 1.25592 1.21333 1.01013 0.93086 0.84882 1.21319 1.01359 0.95235 0.91946 0.89715 1.21653 0.99492 0.95216 0.99182 1.21572 1.01840 0.98460 0.93777 1.21511 1.00407 0.95058 0.98454 1.22186 1.00643 0.98187 0.97043 1.21844 0.94532 0.84854 0.94147 0.92256 1.86564 1.73210 1.31012 1.48664 1.20846 1.00978 0.92093 1.02597 0.89748 0.86882 0.85598 0.85175 0.73648 0.92552 0.91024 0.91476 0.90787 0.91505 0.90542 0.90421 0.91516 0.91527 0.90334 0.75891 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.64 10.97 21.83 0.24 -41.40 16 2 C 0.04 1.91 5.14 85.25 0.44 2.35 16 3 Si 0.98 37.35 29.60 68.60 2.03 39.38 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 5 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 6 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 7 C -0.50 -26.63 9.05 23.46 0.21 -26.42 16 8 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 9 C 0.06 3.49 5.57 -21.29 -0.12 3.37 16 10 C -0.14 -7.39 8.69 22.73 0.20 -7.19 16 11 C -0.12 -5.71 10.02 22.22 0.22 -5.49 16 12 C -0.15 -6.68 9.53 22.46 0.21 -6.47 16 13 C -0.64 -28.79 5.94 22.22 0.13 -28.66 16 14 S 2.72 102.42 5.73 -56.49 -0.32 102.10 16 15 O -0.99 -41.91 16.73 -128.00 -2.14 -44.05 16 16 O -0.99 -39.35 17.27 -128.00 -2.21 -41.56 16 17 N -1.10 -31.86 5.53 -187.49 -1.04 -32.89 16 18 C 0.12 3.58 5.54 86.38 0.48 4.06 16 19 C -0.08 -1.71 1.96 -10.80 -0.02 -1.73 16 20 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 21 C -0.12 -2.09 5.09 30.59 0.16 -1.93 16 22 C -0.12 -1.58 5.92 30.59 0.18 -1.40 16 23 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 24 C -0.14 -2.06 5.54 30.58 0.17 -1.89 16 25 C 0.11 2.11 2.90 30.58 0.09 2.20 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 O -0.59 -14.22 12.56 -148.98 -1.87 -16.09 16 28 C -0.14 -7.25 9.26 22.73 0.21 -7.04 16 29 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 30 H 0.11 6.02 6.18 -2.91 -0.02 6.00 16 31 H 0.13 4.94 8.06 -2.91 -0.02 4.92 16 32 H 0.13 5.05 7.60 -2.91 -0.02 5.03 16 33 H 0.43 9.70 8.37 -96.74 -0.81 8.89 16 34 H 0.06 1.95 7.54 -2.39 -0.02 1.94 16 35 H 0.07 2.15 7.75 -2.39 -0.02 2.13 16 36 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.07 1.28 7.54 -2.39 -0.02 1.26 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.39 6.26 9.08 -74.06 -0.67 5.59 16 45 H 0.11 5.36 7.60 -2.91 -0.02 5.34 16 Total: -1.00 -68.75 374.97 -3.04 -71.79 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -0.47 Total: 40.21 kcal Atomic # 6 Polarization: -80.23 SS G_CDS: 2.74 Total: -77.49 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -0.80 Total: -74.29 kcal Atomic # 8 Polarization: -95.47 SS G_CDS: -6.22 Total: -101.70 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 16 Polarization: 102.42 SS G_CDS: -0.32 Total: 102.10 kcal Total: -68.75 -3.04 -71.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590763628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.798 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds