Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86811 * 119.99692 * 2 1 4 4 H 1.48498 * 109.47029 * 239.99674 * 3 2 1 5 5 H 1.48499 * 109.46911 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46836 * 119.99640 * 3 2 1 7 7 C 1.39941 * 120.00436 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00145 * 162.23087 * 7 2 1 9 9 C 1.41392 * 120.00003 * 342.22762 * 7 2 1 10 10 C 1.40735 * 120.24311 * 335.27479 * 9 7 2 11 11 C 1.37599 * 119.74865 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24541 * 359.72665 * 11 10 9 13 13 C 1.38614 * 120.50065 * 0.55122 * 12 11 10 14 14 S 1.76194 * 119.87551 * 179.71834 * 13 12 11 15 15 O 1.42100 * 106.40158 * 156.18609 * 14 13 12 16 16 O 1.42099 * 106.40223 * 23.27398 * 14 13 12 17 17 N 1.65594 * 107.22151 * 269.72828 * 14 13 12 18 18 C 1.46505 * 119.99837 * 65.00175 * 17 14 13 19 19 C 1.53003 * 109.47087 * 164.99971 * 18 17 14 20 20 C 1.52998 * 109.47030 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.47030 * 179.97438 * 20 19 18 22 22 O 1.42902 * 112.84600 * 53.80410 * 21 20 19 23 23 C 1.53778 * 113.61459 * 282.49704 * 21 20 19 24 24 C 1.53776 * 87.08172 * 220.02058 * 23 21 20 25 25 C 1.53781 * 87.08345 * 25.43272 * 24 23 21 26 26 C 1.37640 * 120.24525 * 359.45192 * 13 12 11 27 27 H 0.96999 * 120.00100 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.12545 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.88021 * 180.02562 * 11 10 9 30 30 H 1.07993 * 119.74939 * 180.29477 * 12 11 10 31 31 H 0.96996 * 120.00162 * 245.00082 * 17 14 13 32 32 H 1.08997 * 109.47173 * 285.00046 * 18 17 14 33 33 H 1.08997 * 109.46779 * 44.99907 * 18 17 14 34 34 H 1.08997 * 109.47176 * 300.00074 * 19 18 17 35 35 H 1.08998 * 109.47040 * 59.99585 * 19 18 17 36 36 H 1.08997 * 109.47163 * 300.00035 * 20 19 18 37 37 H 1.08997 * 109.46846 * 59.99930 * 20 19 18 38 38 H 0.96701 * 113.99916 * 309.66332 * 22 21 20 39 39 H 1.08999 * 113.61431 * 334.56696 * 23 21 20 40 40 H 1.09001 * 113.61722 * 105.47033 * 23 21 20 41 41 H 1.09000 * 113.61629 * 270.88536 * 24 23 21 42 42 H 1.08998 * 113.61963 * 139.98324 * 24 23 21 43 43 H 1.09002 * 113.61766 * 220.02594 * 25 24 23 44 44 H 1.08994 * 113.61748 * 89.11530 * 25 24 23 45 45 H 1.08003 * 120.12388 * 180.25033 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.0959 1.6965 -1.2124 5 1 1.2771 2.7465 -0.0006 6 1 3.0958 1.6966 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0493 -1.2340 -0.2860 9 6 1.3517 -2.4074 0.3727 10 6 0.2235 -2.3641 1.2129 11 6 -0.4070 -3.5338 1.5701 12 6 0.0619 -4.7514 1.1010 13 6 1.1756 -4.8065 0.2775 14 16 1.7617 -6.3633 -0.3032 15 8 2.4876 -6.0993 -1.4959 16 8 0.6562 -7.2544 -0.2474 17 7 2.8639 -6.9156 0.8024 18 6 2.4328 -7.2508 2.1619 19 6 3.5227 -8.0710 2.8549 20 6 3.0722 -8.4216 4.2744 21 6 4.1619 -9.2423 4.9672 22 8 5.4397 -8.6033 4.9396 23 6 4.1978 -10.7151 4.5263 24 6 4.4649 -11.0677 5.9991 25 6 3.7574 -9.7512 6.3609 26 6 1.8220 -3.6490 -0.0926 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1460 -1.4164 1.5759 29 1 -1.2732 -3.5030 2.2144 30 1 -0.4420 -5.6642 1.3825 31 1 3.7949 -7.0172 0.5500 32 1 2.2559 -6.3335 2.7235 33 1 1.5124 -7.8331 2.1179 34 1 3.6996 -8.9882 2.2933 35 1 4.4431 -7.4887 2.8987 36 1 2.8950 -7.5046 4.8363 37 1 2.1520 -9.0041 4.2300 38 1 5.7099 -8.3020 4.0614 39 1 3.2411 -11.0834 4.1558 40 1 5.0294 -10.9522 3.8628 41 1 5.5231 -11.0807 6.2600 42 1 3.9334 -11.9567 6.3387 43 1 4.2336 -9.2099 7.1784 44 1 2.6804 -9.8559 6.4919 45 1 2.6872 -3.6939 -0.7375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591469202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = -124.684645 kcal Electronic energy + Delta-G solvation = -26852.212223 eV Core-core repulsion = 22960.355825 eV Total energy + Delta-G solvation = -3891.856398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.66846 -39.44604 -38.28400 -37.08469 -36.89232 -35.67058 -35.53501 -33.01715 -31.91828 -31.58655 -27.82737 -27.34764 -26.59912 -24.09602 -23.66778 -22.80747 -22.19410 -20.59925 -20.50221 -19.61638 -18.40163 -17.82692 -17.69043 -17.04646 -16.85632 -16.64020 -16.42069 -16.06400 -15.84104 -15.57007 -15.20699 -15.04548 -14.58391 -14.30889 -14.12362 -13.81002 -13.68997 -13.27886 -13.24232 -13.17972 -13.06701 -13.04392 -12.87298 -12.70628 -12.64064 -12.56810 -12.43438 -12.21596 -11.95965 -11.82325 -11.67139 -11.56416 -11.35351 -11.14083 -10.93801 -10.49691 -10.38036 -9.84860 -9.56171 -8.73642 -6.45843 -0.47877 0.40887 0.84460 1.36703 1.46208 1.49743 2.14443 2.18478 2.55023 2.80380 3.19972 3.44997 3.51278 3.62423 3.72300 3.82730 3.96520 4.10281 4.20321 4.28409 4.33953 4.45040 4.56328 4.69236 4.79294 4.80080 4.84619 4.86370 4.90185 4.90499 5.01076 5.07404 5.07473 5.12715 5.20156 5.22348 5.36690 5.41322 5.46406 5.50934 5.56438 5.88513 5.93436 6.09979 6.16173 6.52055 6.79359 6.84289 6.85480 8.24437 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013947 B = 0.002600 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.177092 B =10766.795233 C =11650.184814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.499 4.499 8 H 0.080 0.920 9 C 0.061 3.939 10 C -0.141 4.141 11 C -0.123 4.123 12 C -0.147 4.147 13 C -0.639 4.639 14 S 2.721 3.279 15 O -0.998 6.998 16 O -0.987 6.987 17 N -1.104 6.104 18 C 0.110 3.890 19 C -0.122 4.122 20 C -0.134 4.134 21 C 0.104 3.896 22 O -0.562 6.562 23 C -0.162 4.162 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.147 4.147 27 H 0.292 0.708 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.427 0.573 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.389 0.611 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.649 -15.635 10.682 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.528 4.528 8 H 0.099 0.901 9 C 0.058 3.942 10 C -0.161 4.161 11 C -0.142 4.142 12 C -0.167 4.167 13 C -0.727 4.727 14 S 2.813 3.187 15 O -0.988 6.988 16 O -0.977 6.977 17 N -0.867 5.867 18 C -0.015 4.015 19 C -0.161 4.161 20 C -0.173 4.173 21 C 0.063 3.937 22 O -0.371 6.371 23 C -0.200 4.200 24 C -0.175 4.175 25 C -0.171 4.171 26 C -0.168 4.168 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.264 0.736 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.239 0.761 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.967 -16.030 10.570 20.107 hybrid contribution 0.480 1.805 -0.477 1.928 sum 6.446 -14.225 10.093 18.595 Atomic orbital electron populations 1.69816 1.09020 1.31059 1.35142 1.26782 0.95540 1.04643 0.91034 0.85210 0.78783 0.75350 0.80171 1.18504 1.19095 1.18171 1.19846 0.98651 0.92261 1.42047 0.90139 1.18051 0.92723 0.93008 0.90414 1.21650 0.98302 0.97679 0.98469 1.21155 0.99789 0.92687 1.00565 1.20486 0.96886 0.98184 1.01176 1.30276 1.08786 1.19145 1.14501 1.00722 0.72683 0.73019 0.72273 1.93502 1.73210 1.86358 1.45775 1.93490 1.53832 1.63538 1.86844 1.55166 1.24019 1.82233 1.25259 1.21491 0.99345 1.00070 0.80612 1.21722 0.98192 1.00625 0.95589 1.22070 0.99122 1.01191 0.94908 1.22282 0.83304 0.90946 0.97133 1.86452 1.35137 1.79005 1.36518 1.23633 1.03139 0.96075 0.97152 1.22748 1.00621 0.97617 0.96497 1.23125 1.01713 0.96679 0.95582 1.20833 1.01792 0.92210 1.01922 0.89746 0.87002 0.85510 0.84858 0.73618 0.91729 0.90053 0.89636 0.90074 0.91230 0.89188 0.76064 0.88232 0.91079 0.90925 0.90352 0.91840 0.87474 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.97 10.97 21.82 0.24 -41.73 16 2 C 0.04 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 37.11 29.60 68.60 2.03 39.14 16 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 6 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 7 C -0.50 -26.35 9.05 23.46 0.21 -26.14 16 8 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 9 C 0.06 3.24 5.57 -21.29 -0.12 3.12 16 10 C -0.14 -7.12 8.70 22.73 0.20 -6.92 16 11 C -0.12 -5.36 10.02 22.22 0.22 -5.14 16 12 C -0.15 -6.04 9.53 22.46 0.21 -5.82 16 13 C -0.64 -27.08 5.94 22.22 0.13 -26.94 16 14 S 2.72 95.54 5.73 -56.49 -0.32 95.22 16 15 O -1.00 -40.79 17.27 -128.00 -2.21 -43.00 16 16 O -0.99 -37.42 16.73 -128.00 -2.14 -39.56 16 17 N -1.10 -26.83 6.00 -187.48 -1.12 -27.95 16 18 C 0.11 2.26 6.22 86.38 0.54 2.79 16 19 C -0.12 -1.69 4.92 30.59 0.15 -1.54 16 20 C -0.13 -1.82 4.85 30.59 0.15 -1.67 16 21 C 0.10 1.50 1.38 -10.27 -0.01 1.48 16 22 O -0.56 -9.61 13.39 -148.98 -2.00 -11.61 16 23 C -0.16 -2.00 7.32 31.12 0.23 -1.77 16 24 C -0.14 -1.79 8.02 31.12 0.25 -1.54 16 25 C -0.13 -1.87 7.47 31.12 0.23 -1.63 16 26 C -0.15 -7.12 9.26 22.73 0.21 -6.91 16 27 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 28 H 0.11 5.81 6.18 -2.91 -0.02 5.79 16 29 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 30 H 0.13 4.71 7.59 -2.91 -0.02 4.68 16 31 H 0.43 8.15 8.65 -96.75 -0.84 7.32 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.65 7.75 -2.39 -0.02 1.63 16 34 H 0.09 1.01 8.05 -2.39 -0.02 0.99 16 35 H 0.08 0.96 6.75 -2.39 -0.02 0.95 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.05 8.05 -2.39 -0.02 1.03 16 38 H 0.39 4.34 7.18 -74.06 -0.53 3.81 16 39 H 0.10 1.03 8.03 -2.39 -0.02 1.01 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.11 1.17 8.10 -2.39 -0.02 1.15 16 45 H 0.11 5.19 7.60 -2.91 -0.02 5.17 16 Total: -1.00 -68.51 381.46 -2.84 -71.35 By element: Atomic # 1 Polarization: 34.95 SS G_CDS: -0.35 Total: 34.60 kcal Atomic # 6 Polarization: -79.50 SS G_CDS: 3.04 Total: -76.46 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -0.88 Total: -69.68 kcal Atomic # 8 Polarization: -87.82 SS G_CDS: -6.35 Total: -94.16 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Atomic # 16 Polarization: 95.54 SS G_CDS: -0.32 Total: 95.22 kcal Total: -68.51 -2.84 -71.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591469202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.333 kcal (2) G-P(sol) polarization free energy of solvation -68.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds