Wall clock time and date at job start Sat Apr 11 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86806 * 120.00083 * 2 1 4 4 H 1.48499 * 109.46959 * 240.00532 * 3 2 1 5 5 H 1.48504 * 109.46661 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47058 * 120.00099 * 3 2 1 7 7 C 1.40226 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99801 * 197.86245 * 7 2 1 9 9 C 1.41108 * 119.99800 * 17.85782 * 7 2 1 10 10 C 1.40886 * 120.10337 * 204.63417 * 9 7 2 11 11 C 1.36313 * 119.89122 * 180.02562 * 10 9 7 12 12 C 1.40008 * 120.10811 * 0.02562 * 11 10 9 13 13 C 1.47643 * 119.89695 * 179.70199 * 12 11 10 14 14 O 1.21595 * 119.99896 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00313 * 180.02562 * 13 12 11 16 16 C 1.46498 * 120.00153 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.46980 * 180.02562 * 16 15 13 18 18 C 1.38237 * 119.96385 * 259.99576 * 17 16 15 19 19 C 1.38210 * 120.10756 * 179.97438 * 18 17 16 20 20 C 1.38235 * 120.11959 * 0.06804 * 19 18 17 21 21 C 1.38660 * 120.06102 * 359.97438 * 20 19 18 22 22 C 1.38652 * 119.96744 * 79.72301 * 17 16 15 23 23 O 1.36110 * 119.40084 * 359.75396 * 22 17 16 24 24 C 1.43180 * 116.69235 * 162.71226 * 23 22 17 25 25 C 1.53475 * 108.24089 * 46.29884 * 24 23 22 26 26 O 1.36105 * 119.40601 * 179.65536 * 21 20 19 27 27 C 1.40011 * 120.21240 * 359.97438 * 12 11 10 28 28 C 1.36323 * 120.10311 * 359.97438 * 27 12 11 29 29 H 0.97002 * 119.99947 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.05645 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.94775 * 180.02562 * 11 10 9 32 32 H 0.97007 * 119.99880 * 0.02562 * 15 13 12 33 33 H 1.09003 * 109.46982 * 299.99975 * 16 15 13 34 34 H 1.09001 * 109.47550 * 59.99868 * 16 15 13 35 35 H 1.08001 * 119.94874 * 359.93651 * 18 17 16 36 36 H 1.08003 * 119.94257 * 180.08675 * 19 18 17 37 37 H 1.07997 * 119.97211 * 180.02562 * 20 19 18 38 38 H 1.08994 * 109.71276 * 165.99029 * 24 23 22 39 39 H 1.09002 * 109.70414 * 286.61904 * 24 23 22 40 40 H 1.08997 * 109.69890 * 59.97758 * 25 24 23 41 41 H 1.08997 * 109.70394 * 180.55313 * 25 24 23 42 42 H 1.07993 * 119.95340 * 179.97438 * 27 12 11 43 43 H 1.07998 * 120.05334 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0941 1.6964 -1.2126 5 1 1.2754 2.7465 0.0006 6 1 3.0942 1.6964 1.2124 7 6 2.0076 -1.2144 -0.0005 8 1 3.0486 -1.2369 0.2863 9 6 1.3531 -2.4068 -0.3758 10 6 1.8267 -3.6494 0.0894 11 6 1.1914 -4.7987 -0.2763 12 6 0.0702 -4.7457 -1.1132 13 6 -0.6103 -5.9938 -1.5116 14 8 -0.1972 -7.0656 -1.1127 15 7 -1.6895 -5.9453 -2.3176 16 6 -2.3651 -7.1838 -2.7125 17 6 -3.5317 -6.8558 -3.6084 18 6 -4.8130 -6.8263 -3.0904 19 6 -5.8851 -6.5254 -3.9092 20 6 -5.6799 -6.2544 -5.2491 21 6 -4.3973 -6.2832 -5.7752 22 6 -3.3182 -6.5786 -4.9500 23 8 -2.0498 -6.6012 -5.4433 24 6 -1.9146 -6.6892 -6.8660 25 6 -2.8786 -5.6794 -7.5036 26 8 -4.2113 -6.0212 -7.0977 27 6 -0.4043 -3.5132 -1.5781 28 6 0.2238 -2.3584 -1.2169 29 1 -0.4850 0.8401 0.0004 30 1 2.6917 -3.6914 0.7346 31 1 1.5535 -5.7517 0.0801 32 1 -2.0188 -5.0903 -2.6362 33 1 -1.6648 -7.8247 -3.2483 34 1 -2.7239 -7.7015 -1.8229 35 1 -4.9768 -7.0392 -2.0443 36 1 -6.8849 -6.5016 -3.5015 37 1 -6.5192 -6.0191 -5.8867 38 1 -0.8904 -6.4516 -7.1533 39 1 -2.1656 -7.6968 -7.1974 40 1 -2.6312 -4.6725 -7.1674 41 1 -2.8020 -5.7335 -8.5896 42 1 -1.2692 -3.4772 -2.2237 43 1 -0.1426 -1.4082 -1.5763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758968574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:47 Heat of formation + Delta-G solvation = -68.855645 kcal Electronic energy + Delta-G solvation = -28139.505783 eV Core-core repulsion = 24114.626361 eV Total energy + Delta-G solvation = -4024.879422 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46917 -39.09375 -38.04191 -37.45681 -37.00033 -34.30274 -33.84284 -31.42320 -31.32533 -29.95824 -29.40645 -28.60222 -26.71824 -25.30092 -24.86106 -22.14910 -21.47250 -21.20460 -20.83429 -19.56713 -18.75590 -17.60261 -17.51956 -17.39710 -16.55781 -15.75840 -15.51312 -15.38898 -15.04580 -14.88720 -14.68641 -14.48268 -14.04848 -13.93412 -13.81591 -13.54949 -13.15558 -12.93889 -12.66380 -12.37697 -12.09119 -11.96937 -11.90392 -11.84874 -11.36167 -11.32096 -11.29643 -11.24394 -10.96812 -10.62059 -10.59920 -10.04177 -9.53387 -9.32790 -9.10662 -8.62603 -8.50301 -8.25142 -7.68996 -7.51278 -7.01352 -4.58007 1.01362 1.13950 2.27591 2.80777 2.93563 2.94976 2.99296 3.03151 3.06414 3.42399 3.75038 3.91734 3.96181 4.11317 4.36140 4.55807 4.59686 4.64229 4.78099 4.91946 4.99246 5.10645 5.20088 5.28688 5.50712 5.58709 5.64343 5.85990 5.92120 6.08531 6.11459 6.19497 6.32429 6.35128 6.44922 6.71203 6.79359 6.84896 6.98086 7.09538 7.16318 7.20690 7.46169 7.68804 7.82738 7.88455 8.09634 8.30963 8.42252 8.65421 8.78016 9.13924 9.90674 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013052 B = 0.002675 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.706014 B =10465.538777 C =11203.715246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.445 4.445 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.282 4.282 13 C 0.573 3.427 14 O -0.577 6.577 15 N -0.732 5.732 16 C 0.174 3.826 17 C -0.098 4.098 18 C -0.097 4.097 19 C -0.118 4.118 20 C -0.110 4.110 21 C 0.044 3.956 22 C 0.068 3.932 23 O -0.294 6.294 24 C 0.019 3.981 25 C 0.020 3.980 26 O -0.309 6.309 27 C -0.062 4.062 28 C -0.179 4.179 29 H 0.287 0.713 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.397 0.603 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 -6.953 -13.135 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.472 4.472 8 H 0.102 0.898 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.041 4.041 12 C -0.286 4.286 13 C 0.367 3.633 14 O -0.459 6.459 15 N -0.385 5.385 16 C 0.051 3.949 17 C -0.099 4.099 18 C -0.116 4.116 19 C -0.136 4.136 20 C -0.129 4.129 21 C 0.000 4.000 22 C 0.022 3.978 23 O -0.208 6.208 24 C -0.056 4.056 25 C -0.056 4.056 26 O -0.224 6.224 27 C -0.081 4.081 28 C -0.198 4.198 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.232 0.768 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.139 0.861 42 H 0.105 0.895 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.218 -7.561 -12.892 18.105 hybrid contribution 0.166 1.274 -0.422 1.352 sum -10.052 -6.287 -13.314 17.828 Atomic orbital electron populations 1.69739 1.07896 1.30089 1.31833 1.26088 0.94798 1.01825 0.91914 0.86272 0.80210 0.79516 0.80321 1.18506 1.20070 1.18677 1.19808 0.98408 0.91234 1.37783 0.89784 1.17771 0.90372 0.92145 0.87122 1.20712 1.04616 0.92660 1.07896 1.20358 0.92918 0.97140 0.93704 1.18899 1.04432 0.91010 1.14256 1.18574 0.78517 0.89622 0.76537 1.90629 1.66371 1.31666 1.57282 1.45875 1.31690 1.08542 1.52420 1.19844 0.90866 0.88070 0.96165 1.19388 0.95778 1.03359 0.91361 1.20959 0.90794 0.99537 1.00312 1.20901 0.99385 1.00863 0.92495 1.20458 0.94319 1.02627 0.95527 1.18869 0.94067 1.03240 0.83864 1.18761 0.83779 1.01843 0.93384 1.86463 1.22954 1.89023 1.22321 1.23655 1.02317 0.99934 0.79744 1.23691 0.81161 0.99004 1.01712 1.86359 1.30149 1.84932 1.20954 1.20472 0.97301 0.92618 0.97686 1.20967 0.99922 0.96873 1.02022 0.90219 0.88407 0.88104 0.76783 0.90957 0.91071 0.84702 0.84874 0.84880 0.85919 0.90552 0.90119 0.86128 0.89460 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.64 10.95 55.56 0.61 -18.03 16 2 C 0.08 1.76 5.14 -17.31 -0.09 1.67 16 3 Si 0.91 17.36 29.60 -169.99 -5.03 12.33 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.44 -11.15 9.04 -37.75 -0.34 -11.49 16 8 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.13 3.32 5.58 -106.80 -0.60 2.73 16 10 C -0.24 -5.88 9.73 -39.27 -0.38 -6.26 16 11 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 12 C -0.28 -6.60 5.89 -104.73 -0.62 -7.22 16 13 C 0.57 12.62 7.76 -12.42 -0.10 12.52 16 14 O -0.58 -14.10 16.32 5.28 0.09 -14.02 16 15 N -0.73 -13.14 5.50 -62.49 -0.34 -13.48 16 16 C 0.17 2.69 5.43 -5.19 -0.03 2.66 16 17 C -0.10 -1.29 5.26 -104.47 -0.55 -1.84 16 18 C -0.10 -1.08 9.66 -39.59 -0.38 -1.46 16 19 C -0.12 -1.14 10.04 -39.59 -0.40 -1.54 16 20 C -0.11 -1.16 9.96 -39.43 -0.39 -1.55 16 21 C 0.04 0.54 6.49 -39.14 -0.25 0.29 16 22 C 0.07 0.91 6.47 -39.14 -0.25 0.65 16 23 O -0.29 -3.93 9.61 -32.86 -0.32 -4.24 16 24 C 0.02 0.17 7.25 37.40 0.27 0.44 16 25 C 0.02 0.16 7.27 37.40 0.27 0.44 16 26 O -0.31 -3.47 10.43 -32.85 -0.34 -3.81 16 27 C -0.06 -1.40 9.47 -39.61 -0.38 -1.78 16 28 C -0.18 -4.44 8.63 -39.27 -0.34 -4.78 16 29 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 30 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 31 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 32 H 0.40 6.73 6.47 -40.82 -0.26 6.46 16 33 H 0.07 1.19 7.83 -51.93 -0.41 0.79 16 34 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 35 H 0.14 1.28 8.03 -52.49 -0.42 0.86 16 36 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.73 6.37 -52.49 -0.33 1.40 16 43 H 0.12 3.00 6.15 -52.49 -0.32 2.68 16 LS Contribution 365.77 15.07 5.51 5.51 Total: -1.00 -30.73 365.77 -9.83 -40.55 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -5.07 Total: 12.60 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -4.93 Total: -17.41 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.27 Total: -31.51 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.57 Total: -22.07 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.73 -9.83 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758968574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.301 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds