Wall clock time and date at job start Sat Apr 11 2020 05:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86803 * 119.99405 * 2 1 4 4 H 1.48500 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46975 * 299.99782 * 3 2 1 6 6 H 1.48498 * 109.47557 * 60.00039 * 3 2 1 7 7 C 1.38630 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99936 * 179.97438 * 7 2 1 9 9 O 1.34800 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.35777 * 117.00080 * 174.51703 * 9 7 2 11 11 C 1.38735 * 120.08743 * 354.19171 * 10 9 7 12 12 C 1.38343 * 119.97575 * 180.29716 * 11 10 9 13 13 F 1.35096 * 119.92237 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.15584 * 359.97438 * 12 11 10 15 15 C 1.38188 * 120.17548 * 0.02562 * 14 12 11 16 16 C 1.38712 * 120.02011 * 0.02562 * 15 14 12 17 17 N 1.40093 * 120.07411 * 179.97438 * 16 15 14 18 18 C 1.34777 * 120.00112 * 34.07260 * 17 16 15 19 19 O 1.21296 * 120.00098 * 5.60609 * 18 17 16 20 20 C 1.50699 * 120.00087 * 185.61151 * 18 17 16 21 21 O 1.42894 * 109.47351 * 180.02562 * 20 18 17 22 22 C 1.42900 * 114.00373 * 179.97438 * 21 20 18 23 23 C 1.53181 * 109.53970 * 269.55644 * 22 21 20 24 24 C 1.53099 * 109.15897 * 183.15040 * 23 22 21 25 25 O 1.42906 * 109.41568 * 57.60706 * 24 23 22 26 26 C 1.42909 * 114.09658 * 298.84138 * 25 24 23 27 27 C 1.53087 * 109.41309 * 61.15828 * 26 25 24 28 28 H 0.97003 * 120.00251 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.01341 * 0.25311 * 11 10 9 30 30 H 1.07996 * 119.91659 * 179.97438 * 14 12 11 31 31 H 1.07997 * 119.99298 * 180.02562 * 15 14 12 32 32 H 0.97001 * 119.99643 * 214.07169 * 17 16 15 33 33 H 1.09007 * 109.46849 * 299.99844 * 20 18 17 34 34 H 1.08997 * 109.47367 * 59.99255 * 20 18 17 35 35 H 1.09000 * 109.54200 * 29.81795 * 22 21 20 36 36 H 1.09003 * 109.51913 * 303.05202 * 23 22 21 37 37 H 1.08993 * 109.52361 * 63.24277 * 23 22 21 38 38 H 1.08995 * 109.47846 * 297.62226 * 24 23 22 39 39 H 1.08998 * 109.47605 * 177.58693 * 24 23 22 40 40 H 1.08998 * 109.47721 * 301.17602 * 26 25 24 41 41 H 1.09001 * 109.48656 * 181.14548 * 26 25 24 42 42 H 1.09010 * 109.52164 * 182.48412 * 27 26 25 43 43 H 1.09004 * 109.52817 * 62.29907 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.7095 1.3467 -0.0006 5 1 1.8907 2.3965 -1.2126 6 1 1.8908 2.3966 1.2125 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3350 -2.3680 0.0005 10 6 2.0698 -3.5039 -0.1145 11 6 3.4356 -3.4283 -0.3460 12 6 4.1811 -4.5872 -0.4689 13 9 5.5109 -4.5123 -0.6948 14 6 3.5670 -5.8245 -0.3610 15 6 2.2070 -5.9072 -0.1305 16 6 1.4524 -4.7499 -0.0071 17 7 0.0735 -4.8325 0.2261 18 6 -0.4243 -5.8351 0.9767 19 8 0.3278 -6.6065 1.5340 20 6 -1.9152 -5.9979 1.1236 21 8 -2.1914 -7.1222 1.9611 22 6 -3.5845 -7.3656 2.1667 23 6 -4.0603 -6.6028 3.4069 24 6 -5.5332 -6.9316 3.6647 25 8 -5.6836 -8.3435 3.8256 26 6 -5.2987 -9.1057 2.6797 27 6 -3.8165 -8.8643 2.3824 28 1 -0.4851 0.8401 0.0004 29 1 3.9166 -2.4650 -0.4308 30 1 4.1526 -6.7267 -0.4580 31 1 1.7315 -6.8732 -0.0465 32 1 -0.5231 -4.1680 -0.1528 33 1 -2.3364 -5.0984 1.5729 34 1 -2.3618 -6.1570 0.1421 35 1 -4.1456 -7.0316 1.2940 36 1 -3.4641 -6.9014 4.2692 37 1 -3.9500 -5.5313 3.2401 38 1 -6.1338 -6.5960 2.8193 39 1 -5.8654 -6.4250 4.5708 40 1 -5.8963 -8.7986 1.8214 41 1 -5.4621 -10.1653 2.8761 42 1 -3.5317 -9.4101 1.4828 43 1 -3.2153 -9.2085 3.2240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760789828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:01 Heat of formation + Delta-G solvation = -192.813710 kcal Electronic energy + Delta-G solvation = -28838.718278 eV Core-core repulsion = 24377.694407 eV Total energy + Delta-G solvation = -4461.023872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.86233 -41.69719 -40.68646 -40.12449 -38.44106 -37.87147 -35.62700 -34.32828 -33.56255 -32.10246 -31.26304 -30.63560 -28.46813 -27.37790 -25.23928 -24.58016 -24.12701 -23.27670 -21.70374 -21.30007 -20.17721 -19.60983 -18.52452 -18.48484 -17.65752 -17.32732 -17.04577 -16.98185 -16.93652 -16.62888 -16.55009 -15.98712 -15.82578 -15.66455 -15.46481 -15.30523 -15.24936 -14.92939 -14.44956 -14.21040 -14.02251 -13.77506 -13.73752 -13.42343 -13.27066 -13.06986 -12.63701 -12.44104 -12.35726 -12.24942 -12.13690 -11.92036 -11.69351 -11.38169 -11.25176 -10.91179 -10.82624 -10.68000 -10.56914 -9.60658 -8.81819 -8.53223 -6.18704 0.12153 0.42259 1.37193 1.42200 1.47900 1.52693 1.69597 2.12743 2.62094 2.81192 2.98645 3.03219 3.13157 3.41539 3.56725 3.72898 3.82539 3.91388 3.97494 4.07046 4.12715 4.15560 4.22456 4.27504 4.32124 4.40304 4.52857 4.59474 4.68224 4.76948 4.83013 4.86910 4.99752 5.04976 5.12369 5.18246 5.19172 5.25828 5.31107 5.48489 5.91186 5.95998 6.07356 6.23611 6.43504 6.91755 7.07361 7.58981 8.67458 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.002719 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.277484 B =10293.873876 C =12549.247555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.006 4.006 3 Si 1.010 2.990 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.416 4.416 8 H 0.098 0.902 9 O -0.200 6.200 10 C 0.134 3.866 11 C -0.264 4.264 12 C 0.125 3.875 13 F -0.144 7.144 14 C -0.204 4.204 15 C -0.050 4.050 16 C 0.061 3.939 17 N -0.648 5.648 18 C 0.509 3.491 19 O -0.552 6.552 20 C 0.052 3.948 21 O -0.382 6.382 22 C 0.081 3.919 23 C -0.181 4.181 24 C 0.065 3.935 25 O -0.405 6.405 26 C 0.065 3.935 27 C -0.152 4.152 28 H 0.276 0.724 29 H 0.137 0.863 30 H 0.158 0.842 31 H 0.147 0.853 32 H 0.421 0.579 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.590 -12.122 0.313 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.206 4.206 3 Si 0.830 3.170 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.491 4.491 8 H 0.115 0.885 9 O -0.105 6.105 10 C 0.080 3.920 11 C -0.285 4.285 12 C 0.105 3.895 13 F -0.122 7.122 14 C -0.224 4.224 15 C -0.070 4.070 16 C -0.033 4.033 17 N -0.295 5.295 18 C 0.297 3.703 19 O -0.430 6.430 20 C -0.027 4.027 21 O -0.301 6.301 22 C 0.024 3.976 23 C -0.219 4.219 24 C -0.012 4.012 25 O -0.324 6.324 26 C -0.012 4.012 27 C -0.189 4.189 28 H 0.085 0.915 29 H 0.154 0.846 30 H 0.176 0.824 31 H 0.165 0.835 32 H 0.258 0.742 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.427 -12.699 0.984 16.461 hybrid contribution 0.687 1.657 -0.409 1.840 sum -9.739 -11.042 0.575 14.734 Atomic orbital electron populations 1.70103 1.07425 1.28980 1.47339 1.26337 0.96854 1.01985 0.95471 0.84635 0.78215 0.75472 0.78657 1.18197 1.19118 1.19433 1.21753 0.92479 0.81109 1.53797 0.88498 1.83896 1.34609 1.11816 1.80174 1.19157 0.90158 0.87188 0.95507 1.20957 0.94092 0.99021 1.14415 1.17452 0.76977 0.94152 1.00898 1.91431 1.31320 1.97329 1.92165 1.20852 0.95046 0.96383 1.10104 1.20684 0.93045 0.96890 0.96427 1.17067 0.84755 0.90747 1.10754 1.43112 1.05725 1.29546 1.51116 1.21030 0.91886 0.80155 0.77209 1.90684 1.61234 1.44601 1.46442 1.22254 0.90350 0.92049 0.98052 1.88029 1.25463 1.47404 1.69203 1.22412 0.81112 0.96314 0.97806 1.22756 0.98377 1.01721 0.99054 1.22657 0.93752 0.81258 1.03528 1.87922 1.86272 1.18502 1.39680 1.22723 0.92144 0.97456 0.88851 1.22301 0.98538 0.94565 1.03535 0.91521 0.84569 0.82406 0.83535 0.74194 0.88253 0.86365 0.89220 0.92157 0.89857 0.91035 0.87683 0.90994 0.86958 0.89124 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.34 13.67 21.61 0.30 -49.04 16 2 C -0.01 -0.33 5.49 84.83 0.47 0.13 16 3 Si 1.01 40.05 29.55 68.60 2.03 42.08 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.42 -22.21 9.44 67.91 0.64 -21.57 16 8 H 0.10 4.91 5.30 -2.91 -0.02 4.90 16 9 O -0.20 -10.58 9.30 -22.74 -0.21 -10.79 16 10 C 0.13 6.18 6.66 22.69 0.15 6.33 16 11 C -0.26 -11.49 9.11 22.41 0.20 -11.28 16 12 C 0.13 4.80 7.29 22.37 0.16 4.96 16 13 F -0.14 -5.21 17.26 44.97 0.78 -4.44 16 14 C -0.20 -7.04 10.02 22.33 0.22 -6.82 16 15 C -0.05 -1.84 8.65 22.37 0.19 -1.65 16 16 C 0.06 2.50 6.28 38.23 0.24 2.74 16 17 N -0.65 -22.89 5.20 -303.03 -1.57 -24.46 16 18 C 0.51 16.93 7.64 87.66 0.67 17.60 16 19 O -0.55 -22.47 14.26 15.96 0.23 -22.24 16 20 C 0.05 1.22 6.24 71.24 0.44 1.66 16 21 O -0.38 -10.03 9.53 -129.94 -1.24 -11.27 16 22 C 0.08 1.49 2.70 30.71 0.08 1.57 16 23 C -0.18 -3.28 5.76 30.69 0.18 -3.10 16 24 C 0.06 0.95 6.84 72.02 0.49 1.44 16 25 O -0.40 -7.36 10.77 -148.98 -1.60 -8.96 16 26 C 0.06 0.86 6.84 72.01 0.49 1.35 16 27 C -0.15 -2.55 5.79 30.68 0.18 -2.37 16 28 H 0.28 13.83 8.31 -92.71 -0.77 13.05 16 29 H 0.14 6.02 5.71 -2.91 -0.02 6.01 16 30 H 0.16 4.39 8.06 -2.91 -0.02 4.36 16 31 H 0.15 5.10 6.48 -2.91 -0.02 5.09 16 32 H 0.42 13.86 8.55 -92.71 -0.79 13.06 16 33 H 0.10 2.01 7.99 -2.38 -0.02 1.99 16 34 H 0.12 1.91 8.09 -2.39 -0.02 1.89 16 35 H 0.09 1.19 7.79 -2.39 -0.02 1.17 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.39 7.99 -2.39 -0.02 1.38 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -69.33 366.88 3.79 -65.54 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.27 Total: 32.60 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 4.82 Total: -9.01 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -1.28 Total: -73.51 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -2.83 Total: -53.26 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.78 Total: -4.44 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -69.33 3.79 -65.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760789828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.275 kcal (2) G-P(sol) polarization free energy of solvation -69.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds