Wall clock time and date at job start Sat Apr 11 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47105 * 2 1 4 4 O 1.45196 * 109.47236 * 119.99981 * 2 1 3 5 5 C 1.34887 * 117.00271 * 270.00287 * 4 2 1 6 6 O 1.21623 * 119.99968 * 359.97438 * 5 4 2 7 7 C 1.46489 * 120.00302 * 179.97438 * 5 4 2 8 8 C 1.38001 * 126.26572 * 179.68673 * 7 5 4 9 9 C 1.39803 * 106.96938 * 179.85034 * 8 7 5 10 10 N 1.48010 * 126.07782 * 180.12158 * 9 8 7 11 11 O 1.21802 * 119.99638 * 180.34501 * 10 9 8 12 12 O 1.21801 * 120.00102 * 0.35018 * 10 9 8 13 13 C 1.35484 * 107.83825 * 0.41357 * 9 8 7 14 14 N 1.34963 * 108.99028 * 359.74475 * 13 9 8 15 15 C 1.46493 * 125.63585 * 179.97438 * 14 13 9 16 16 C 1.50695 * 109.46891 * 239.99982 * 2 1 3 17 17 O 1.21282 * 120.00140 * 254.97053 * 16 2 1 18 18 N 1.34783 * 120.00363 * 74.97684 * 16 2 1 19 19 C 1.46504 * 119.99299 * 4.87164 * 18 16 2 20 20 C 1.46492 * 120.00593 * 184.87493 * 18 16 2 21 21 C 1.50695 * 109.47303 * 89.99289 * 20 18 16 22 22 H 1.08004 * 120.00149 * 0.02562 * 21 20 18 23 23 C 1.37880 * 120.00340 * 179.97438 * 21 20 18 24 24 N 1.31521 * 119.99829 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00369 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46882 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47240 * 120.00136 * 25 23 21 28 28 H 1.48494 * 109.47115 * 240.00329 * 25 23 21 29 29 H 1.09003 * 109.47344 * 296.94961 * 1 2 3 30 30 H 1.08999 * 109.47200 * 56.94620 * 1 2 3 31 31 H 1.08999 * 109.47489 * 176.94788 * 1 2 3 32 32 H 1.07997 * 126.51342 * 359.97438 * 8 7 5 33 33 H 1.08001 * 125.50828 * 179.71881 * 13 9 8 34 34 H 1.08999 * 109.47305 * 270.02644 * 15 14 13 35 35 H 1.09009 * 109.47085 * 30.02366 * 15 14 13 36 36 H 1.09004 * 109.47133 * 150.02085 * 15 14 13 37 37 H 1.09001 * 109.47347 * 84.70214 * 19 18 16 38 38 H 1.09010 * 109.46675 * 204.69939 * 19 18 16 39 39 H 1.08999 * 109.47554 * 324.69708 * 19 18 16 40 40 H 1.08994 * 109.47497 * 209.99930 * 20 18 16 41 41 H 1.09001 * 109.46971 * 329.99651 * 20 18 16 42 42 H 0.96999 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1855 5 6 2.2181 0.0677 2.2865 6 8 1.9977 1.2633 2.2556 7 6 2.7052 -0.5556 3.5194 8 6 2.9632 0.0878 4.7127 9 6 3.4042 -0.8856 5.6141 10 7 3.7955 -0.6555 7.0229 11 8 4.1710 -1.5880 7.7106 12 8 3.7417 0.4662 7.4945 13 6 3.4161 -2.0757 4.9668 14 7 2.9952 -1.8898 3.6980 15 6 2.8683 -2.9347 2.6791 16 6 2.0323 -0.7104 -1.2304 17 8 2.4912 -1.8294 -1.1398 18 7 1.9716 -0.1023 -2.4317 19 6 1.5174 1.2873 -2.5271 20 6 2.3598 -0.8307 -3.6420 21 6 1.1543 -1.5290 -4.2164 22 1 0.1948 -1.4389 -3.7289 23 6 1.2760 -2.2822 -5.3649 24 7 2.4444 -2.3915 -5.9589 25 14 -0.2185 -3.1473 -6.0773 26 1 -1.4041 -2.8673 -5.2281 27 1 -0.4682 -2.6508 -7.4544 28 1 0.0287 -4.6110 -6.1161 29 1 -0.3634 0.4658 0.9161 30 1 -0.3633 0.5605 -0.8613 31 1 -0.3634 -1.0262 -0.0547 32 1 2.8447 1.1424 4.9127 33 1 3.7146 -3.0205 5.3965 34 1 3.8059 -3.0229 2.1304 35 1 2.6382 -3.8854 3.1603 36 1 2.0663 -2.6734 1.9886 37 1 2.3568 1.9575 -2.3417 38 1 1.1187 1.4716 -3.5248 39 1 0.7387 1.4668 -1.7858 40 1 2.7578 -0.1300 -4.3759 41 1 3.1227 -1.5683 -3.3931 42 1 2.5300 -2.9217 -6.7666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761024125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:06 Heat of formation + Delta-G solvation = -62.114281 kcal Electronic energy + Delta-G solvation = -29294.872785 eV Core-core repulsion = 24859.436428 eV Total energy + Delta-G solvation = -4435.436358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.82655 -41.75063 -40.62890 -39.05692 -36.76991 -36.64278 -35.08107 -33.96530 -32.99325 -31.94289 -30.66863 -28.27600 -27.92479 -26.31404 -25.95855 -24.89319 -23.86146 -22.32493 -21.61143 -20.62527 -19.51950 -19.07028 -18.63403 -17.73092 -17.41396 -17.00391 -16.73932 -16.70482 -16.52002 -15.89604 -15.69897 -15.24854 -14.79315 -14.49232 -14.32706 -13.85916 -13.59774 -13.47936 -13.16802 -12.98747 -12.80437 -12.47951 -12.34058 -12.22853 -11.91804 -11.74740 -11.61629 -11.46552 -11.37206 -11.28901 -11.17346 -11.04928 -10.95602 -10.71918 -10.30268 -9.97940 -9.77909 -9.41492 -9.14548 -8.58012 -7.89605 -6.18864 -4.24704 0.04389 0.48965 1.05383 1.81793 1.83186 2.21313 2.45754 3.01903 3.19418 3.27579 3.30498 3.62340 3.84969 4.10397 4.12420 4.30861 4.39279 4.61387 4.75216 4.79932 4.83876 4.89160 4.89685 5.15919 5.24558 5.34093 5.39442 5.48903 5.53752 5.72451 5.79329 5.89256 5.97286 6.05044 6.10129 6.23745 6.81947 7.23261 7.25256 7.33120 7.51909 7.76415 8.05256 8.10824 8.64778 8.82462 9.40945 10.89252 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.002312 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.964780 B =12107.349239 C =12691.809138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.072 3.928 3 H 0.107 0.893 4 O -0.327 6.327 5 C 0.539 3.461 6 O -0.486 6.486 7 C -0.021 4.021 8 C -0.041 4.041 9 C -0.139 4.139 10 N 0.066 4.934 11 O -0.173 6.173 12 O -0.162 6.162 13 C 0.124 3.876 14 N -0.389 5.389 15 C 0.055 3.945 16 C 0.511 3.489 17 O -0.524 6.524 18 N -0.593 5.593 19 C 0.070 3.930 20 C 0.245 3.755 21 C -0.531 4.531 22 H 0.059 0.941 23 C 0.062 3.938 24 N -0.892 5.892 25 Si 0.899 3.101 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.179 0.821 33 H 0.203 0.797 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 3.204 18.019 18.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 H 0.125 0.875 4 O -0.243 6.243 5 C 0.382 3.618 6 O -0.373 6.373 7 C -0.131 4.131 8 C -0.066 4.066 9 C -0.231 4.231 10 N 0.583 4.417 11 O -0.385 6.385 12 O -0.377 6.377 13 C -0.023 4.023 14 N -0.061 5.061 15 C -0.084 4.084 16 C 0.296 3.704 17 O -0.400 6.400 18 N -0.326 5.326 19 C -0.073 4.073 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.531 5.531 25 Si 0.727 3.273 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.197 0.803 33 H 0.220 0.780 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.821 2.544 16.801 17.013 hybrid contribution -0.728 -0.291 -0.242 0.820 sum -1.549 2.253 16.559 16.783 Atomic orbital electron populations 1.22196 0.91728 1.04492 1.03886 1.22800 0.96252 0.97612 0.81980 0.87534 1.86668 1.76960 1.40940 1.19683 1.19442 0.74889 0.84959 0.82511 1.90937 1.48025 1.14651 1.83693 1.19403 1.15808 0.83245 0.94607 1.21104 0.96818 1.00444 0.88239 1.20060 1.21807 0.96491 0.84715 1.42525 0.97396 1.00374 1.01383 1.94542 1.49466 1.35904 1.58606 1.94566 1.58279 1.09648 1.75199 1.21726 0.97501 0.99477 0.83551 1.44307 1.43681 1.08135 1.09966 1.22790 1.07091 0.88498 0.90063 1.19670 0.80345 0.86703 0.83729 1.90675 1.45115 1.18797 1.85456 1.48087 1.64078 1.12866 1.07546 1.21899 0.98889 0.82772 1.03774 1.19396 0.96702 0.92056 0.79153 1.21429 0.95222 1.30788 1.09502 0.92301 1.24946 0.96247 0.96201 0.96667 1.69939 1.23093 1.40388 1.19670 0.86426 0.82585 0.79495 0.78813 1.19786 1.20855 1.20813 0.91113 0.89135 0.90592 0.80339 0.78032 0.88209 0.88193 0.86319 0.93235 0.89888 0.92119 0.94529 0.93564 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.29 37.16 0.35 -1.67 16 2 C 0.07 1.03 2.15 -27.89 -0.06 0.97 16 3 H 0.11 1.41 6.40 -51.93 -0.33 1.08 16 4 O -0.33 -4.47 6.89 -47.56 -0.33 -4.79 16 5 C 0.54 6.80 7.89 34.05 0.27 7.07 16 6 O -0.49 -6.86 16.15 -19.36 -0.31 -7.17 16 7 C -0.02 -0.22 6.89 -82.00 -0.56 -0.79 16 8 C -0.04 -0.43 10.39 -39.08 -0.41 -0.83 16 9 C -0.14 -1.40 7.11 -80.35 -0.57 -1.97 16 10 N 0.07 0.79 4.45 33.77 0.15 0.94 16 11 O -0.17 -2.11 19.03 -29.46 -0.56 -2.67 16 12 O -0.16 -2.12 19.05 -29.46 -0.56 -2.69 16 13 C 0.12 0.92 11.03 -17.16 -0.19 0.73 16 14 N -0.39 -3.26 3.15 -120.40 -0.38 -3.64 16 15 C 0.05 0.38 10.56 59.84 0.63 1.01 16 16 C 0.51 9.73 6.97 -10.99 -0.08 9.65 16 17 O -0.52 -11.93 16.12 -13.62 -0.22 -12.15 16 18 N -0.59 -11.54 2.86 -182.96 -0.52 -12.06 16 19 C 0.07 1.01 9.85 59.85 0.59 1.60 16 20 C 0.25 6.00 5.17 -5.20 -0.03 5.97 16 21 C -0.53 -14.08 9.39 -34.44 -0.32 -14.40 16 22 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 23 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 24 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 25 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.02 6.02 -51.93 -0.31 0.71 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.20 0.81 8.06 -52.49 -0.42 0.38 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.38 8.14 -51.92 -0.42 -0.05 16 36 H 0.12 1.08 6.15 -51.93 -0.32 0.76 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.20 8.03 -51.92 -0.42 0.79 16 39 H 0.06 0.70 4.70 -51.93 -0.24 0.46 16 40 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 41 H 0.05 1.28 7.36 -51.93 -0.38 0.90 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 373.65 15.07 5.63 5.63 Total: -1.00 -33.62 373.65 -6.80 -40.42 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -4.93 Total: -1.88 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -0.48 Total: 8.93 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.01 Total: -39.35 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.98 Total: -29.46 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.62 -6.80 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761024125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.695 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds