Wall clock time and date at job start Sat Apr 11 2020 05:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34897 * 116.99827 * 270.00025 * 4 2 1 6 6 O 1.21613 * 119.99799 * 0.02562 * 5 4 2 7 7 C 1.46491 * 119.99337 * 179.97438 * 5 4 2 8 8 C 1.37998 * 126.25834 * 180.02562 * 7 5 4 9 9 C 1.39794 * 106.96961 * 179.97438 * 8 7 5 10 10 C 1.35484 * 107.84208 * 359.97438 * 9 8 7 11 11 N 1.48025 * 125.50894 * 179.97438 * 10 9 8 12 12 O 1.21805 * 119.99693 * 359.97438 * 11 10 9 13 13 O 1.21800 * 120.00221 * 179.97438 * 11 10 9 14 14 N 1.34963 * 108.98518 * 359.75497 * 10 9 8 15 15 C 1.46501 * 125.63660 * 180.28260 * 14 10 9 16 16 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 17 17 O 1.21283 * 119.99478 * 244.99823 * 16 2 1 18 18 N 1.34773 * 120.00430 * 64.99170 * 16 2 1 19 19 C 1.46506 * 119.99969 * 0.02562 * 18 16 2 20 20 C 1.46499 * 120.00036 * 179.72648 * 18 16 2 21 21 C 1.50703 * 109.47126 * 270.27831 * 20 18 16 22 22 H 1.08002 * 119.99820 * 359.97438 * 21 20 18 23 23 C 1.37876 * 119.99889 * 180.02562 * 21 20 18 24 24 N 1.31518 * 120.00192 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00045 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46767 * 89.99886 * 25 23 21 27 27 H 1.48493 * 109.47240 * 210.00027 * 25 23 21 28 28 H 1.48500 * 109.46974 * 329.99973 * 25 23 21 29 29 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 30 30 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 31 31 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 32 32 H 1.08002 * 126.51860 * 359.97438 * 8 7 5 33 33 H 1.08000 * 126.08117 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.46982 * 270.14001 * 15 14 10 35 35 H 1.09002 * 109.46921 * 30.13463 * 15 14 10 36 36 H 1.09000 * 109.46974 * 150.14271 * 15 14 10 37 37 H 1.08999 * 109.46892 * 269.72362 * 19 18 16 38 38 H 1.09000 * 109.46803 * 29.71536 * 19 18 16 39 39 H 1.09000 * 109.47214 * 149.72329 * 19 18 16 40 40 H 1.08994 * 109.47173 * 30.28203 * 20 18 16 41 41 H 1.09005 * 109.47077 * 150.28374 * 20 18 16 42 42 H 0.96995 * 119.99689 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2182 0.0677 2.2865 6 8 1.9969 1.2632 2.2558 7 6 2.7053 -0.5557 3.5194 8 6 2.9571 0.0866 4.7145 9 6 3.4035 -0.8857 5.6142 10 6 3.4151 -2.0760 4.9671 11 7 3.8239 -3.3710 5.5562 12 8 4.1892 -3.4237 6.7170 13 8 3.7949 -4.3838 4.8802 14 7 2.9892 -1.8909 3.6998 15 6 2.8544 -2.9372 2.6833 16 6 2.0324 -0.7103 -1.2306 17 8 2.6530 -1.7465 -1.1216 18 7 1.7918 -0.1940 -2.4521 19 6 1.0425 1.0580 -2.5836 20 6 2.2854 -0.8814 -3.6479 21 6 3.6681 -0.3821 -3.9797 22 1 4.1325 0.3722 -3.3618 23 6 4.3397 -0.8874 -5.0726 24 7 3.7739 -1.8055 -5.8254 25 14 6.0533 -0.2679 -5.4843 26 1 7.0628 -1.1059 -4.7887 27 1 6.2694 -0.3480 -6.9513 28 1 6.1897 1.1425 -5.0402 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.8330 1.1403 4.9164 33 1 3.6884 -0.7180 6.6423 34 1 3.7900 -3.0307 2.1319 35 1 2.6213 -3.8858 3.1670 36 1 2.0516 -2.6734 1.9947 37 1 -0.0212 0.8370 -2.6727 38 1 1.2123 1.6773 -1.7029 39 1 1.3786 1.5909 -3.4731 40 1 2.3218 -1.9546 -3.4611 41 1 1.6162 -0.6807 -4.4846 42 1 4.2463 -2.1607 -6.5945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761054695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:15 Heat of formation + Delta-G solvation = -53.840775 kcal Electronic energy + Delta-G solvation = -29672.747351 eV Core-core repulsion = 25237.669760 eV Total energy + Delta-G solvation = -4435.077591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.00979 -41.79022 -40.62404 -39.06445 -37.02764 -36.76848 -35.09484 -33.71299 -33.02286 -31.95739 -31.06807 -27.86674 -27.44092 -26.92466 -26.30967 -24.80398 -23.65837 -22.25777 -21.77484 -20.68215 -19.12896 -19.07653 -18.83799 -18.48408 -18.11353 -17.03345 -16.66890 -16.65074 -16.25336 -15.62122 -15.48898 -14.77037 -14.70670 -14.45541 -14.16096 -13.95493 -13.73630 -13.48013 -13.17379 -12.95405 -12.75685 -12.53907 -12.33962 -12.24161 -11.93196 -11.88256 -11.66135 -11.54972 -11.47117 -11.31496 -11.20446 -11.05118 -10.94963 -10.68903 -10.26550 -9.76547 -9.69756 -9.50934 -9.11584 -8.53994 -7.88446 -6.15418 -4.20969 -0.43819 0.58277 0.77850 1.80615 1.88538 2.11374 2.45239 3.06082 3.24625 3.31151 3.33204 3.61041 4.00176 4.11920 4.31433 4.35257 4.62282 4.73633 4.75463 4.86022 4.94436 5.01746 5.19436 5.20561 5.27679 5.41872 5.45809 5.48518 5.52842 5.65855 5.70128 5.80380 5.91088 5.97302 6.08453 6.18976 6.83094 7.21144 7.25093 7.26299 7.33997 7.79789 8.08511 8.12687 8.68188 8.85595 9.44656 10.92725 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002823 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.134641 B = 9914.918621 C =10918.680437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.070 3.930 3 H 0.111 0.889 4 O -0.325 6.325 5 C 0.537 3.463 6 O -0.480 6.480 7 C 0.038 3.962 8 C -0.106 4.106 9 C -0.104 4.104 10 C 0.077 3.923 11 N 0.056 4.944 12 O -0.132 6.132 13 O -0.164 6.164 14 N -0.379 5.379 15 C 0.043 3.957 16 C 0.509 3.491 17 O -0.521 6.521 18 N -0.593 5.593 19 C 0.074 3.926 20 C 0.247 3.753 21 C -0.532 4.532 22 H 0.057 0.943 23 C 0.063 3.937 24 N -0.893 5.893 25 Si 0.899 3.101 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 4.634 19.623 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 H 0.128 0.872 4 O -0.240 6.240 5 C 0.380 3.620 6 O -0.366 6.366 7 C -0.080 4.080 8 C -0.132 4.132 9 C -0.132 4.132 10 C -0.121 4.121 11 N 0.575 4.425 12 O -0.349 6.349 13 O -0.375 6.375 14 N -0.055 5.055 15 C -0.096 4.096 16 C 0.293 3.707 17 O -0.397 6.397 18 N -0.326 5.326 19 C -0.069 4.069 20 C 0.128 3.872 21 C -0.570 4.570 22 H 0.076 0.924 23 C -0.140 4.140 24 N -0.532 5.532 25 Si 0.726 3.274 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.196 0.804 33 H 0.194 0.806 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.226 4.582 18.815 20.669 hybrid contribution 1.082 0.086 -0.346 1.139 sum -6.144 4.668 18.469 20.016 Atomic orbital electron populations 1.22309 0.91923 1.04240 1.04408 1.22797 0.95988 0.97840 0.82150 0.87173 1.86693 1.76755 1.40881 1.19679 1.19517 0.74964 0.84999 0.82565 1.90935 1.47657 1.14447 1.83606 1.19891 1.11015 0.81909 0.95150 1.21474 1.01856 1.00744 0.89083 1.20850 1.02649 0.87957 1.01714 1.20815 1.16978 0.86398 0.87910 1.42547 0.98351 1.00855 1.00737 1.94590 1.48371 1.91999 0.99986 1.94576 1.58387 1.23753 1.60824 1.43980 1.44289 1.08562 1.08699 1.22981 1.06958 0.89321 0.90323 1.19675 0.81284 0.85985 0.83774 1.90704 1.39787 1.23433 1.85735 1.48084 1.53678 1.23968 1.06852 1.21878 0.95446 0.86656 1.02968 1.19380 0.94331 0.93823 0.79625 1.21398 1.00885 1.23315 1.11446 0.92435 1.24928 0.98258 0.94834 0.95937 1.69922 1.38071 1.28052 1.17111 0.86485 0.84230 0.79197 0.77458 1.20485 1.21013 1.19881 0.91099 0.88889 0.90846 0.80408 0.80573 0.88082 0.87192 0.86487 0.92953 0.92313 0.90113 0.93597 0.94477 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 9.27 37.16 0.34 -1.54 16 2 C 0.07 1.02 2.17 -27.88 -0.06 0.96 16 3 H 0.11 1.53 6.15 -51.93 -0.32 1.21 16 4 O -0.32 -4.67 6.86 -47.71 -0.33 -5.00 16 5 C 0.54 6.97 7.89 34.06 0.27 7.24 16 6 O -0.48 -6.66 16.15 -19.35 -0.31 -6.97 16 7 C 0.04 0.42 6.88 -82.00 -0.56 -0.14 16 8 C -0.11 -0.92 10.66 -39.09 -0.42 -1.34 16 9 C -0.10 -0.87 10.46 -39.98 -0.42 -1.29 16 10 C 0.08 0.84 7.85 -144.54 -1.14 -0.29 16 11 N 0.06 0.68 4.45 32.90 0.15 0.82 16 12 O -0.13 -1.59 19.00 -29.46 -0.56 -2.15 16 13 O -0.16 -2.12 16.64 -29.46 -0.49 -2.61 16 14 N -0.38 -4.30 3.15 -116.78 -0.37 -4.67 16 15 C 0.04 0.48 9.96 59.85 0.60 1.07 16 16 C 0.51 9.90 7.10 -10.99 -0.08 9.82 16 17 O -0.52 -12.32 16.09 -14.05 -0.23 -12.55 16 18 N -0.59 -11.63 2.86 -182.95 -0.52 -12.16 16 19 C 0.07 1.05 8.92 59.85 0.53 1.58 16 20 C 0.25 6.12 5.16 -5.19 -0.03 6.09 16 21 C -0.53 -14.55 9.38 -34.44 -0.32 -14.87 16 22 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 25 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.90 5.12 -51.93 -0.27 0.64 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.11 1.10 6.20 -51.93 -0.32 0.78 16 36 H 0.12 1.34 6.16 -51.93 -0.32 1.02 16 37 H 0.05 0.60 7.04 -51.93 -0.37 0.23 16 38 H 0.06 0.68 6.06 -51.93 -0.31 0.37 16 39 H 0.08 1.18 8.07 -51.93 -0.42 0.77 16 40 H 0.05 1.28 7.43 -51.93 -0.39 0.90 16 41 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -33.26 367.48 -7.57 -40.83 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.79 Total: -1.33 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -1.38 Total: 8.92 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.01 Total: -41.04 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -1.92 Total: -29.28 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.26 -7.57 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761054695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.008 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds