Wall clock time and date at job start Sat Apr 11 2020 05:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46670 * 2 1 4 4 O 1.45197 * 109.47339 * 120.00165 * 2 1 3 5 5 C 1.34897 * 116.99827 * 270.00025 * 4 2 1 6 6 O 1.21613 * 119.99799 * 0.02562 * 5 4 2 7 7 C 1.46491 * 119.99337 * 179.97438 * 5 4 2 8 8 C 1.37998 * 126.25834 * 180.02562 * 7 5 4 9 9 C 1.39794 * 106.96961 * 179.97438 * 8 7 5 10 10 C 1.35484 * 107.84208 * 359.97438 * 9 8 7 11 11 N 1.48025 * 125.50894 * 179.97438 * 10 9 8 12 12 O 1.21805 * 119.99693 * 359.97438 * 11 10 9 13 13 O 1.21800 * 120.00221 * 179.97438 * 11 10 9 14 14 N 1.34963 * 108.98518 * 359.75497 * 10 9 8 15 15 C 1.46501 * 125.63660 * 180.28260 * 14 10 9 16 16 C 1.50702 * 109.47230 * 240.00733 * 2 1 3 17 17 O 1.21283 * 119.99478 * 244.99823 * 16 2 1 18 18 N 1.34773 * 120.00430 * 64.99170 * 16 2 1 19 19 C 1.46506 * 119.99969 * 0.02562 * 18 16 2 20 20 C 1.46499 * 120.00036 * 179.72648 * 18 16 2 21 21 C 1.50703 * 109.47126 * 270.27831 * 20 18 16 22 22 H 1.08002 * 119.99820 * 359.97438 * 21 20 18 23 23 C 1.37876 * 119.99889 * 180.02562 * 21 20 18 24 24 N 1.31518 * 120.00192 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00045 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46767 * 89.99886 * 25 23 21 27 27 H 1.48493 * 109.47240 * 210.00027 * 25 23 21 28 28 H 1.48500 * 109.46974 * 329.99973 * 25 23 21 29 29 H 1.08998 * 109.46972 * 299.99294 * 1 2 3 30 30 H 1.09005 * 109.47553 * 60.00228 * 1 2 3 31 31 H 1.09002 * 109.46624 * 179.97438 * 1 2 3 32 32 H 1.08002 * 126.51860 * 359.97438 * 8 7 5 33 33 H 1.08000 * 126.08117 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.46982 * 270.14001 * 15 14 10 35 35 H 1.09002 * 109.46921 * 30.13463 * 15 14 10 36 36 H 1.09000 * 109.46974 * 150.14271 * 15 14 10 37 37 H 1.08999 * 109.46892 * 269.72362 * 19 18 16 38 38 H 1.09000 * 109.46803 * 29.71536 * 19 18 16 39 39 H 1.09000 * 109.47214 * 149.72329 * 19 18 16 40 40 H 1.08994 * 109.47173 * 30.28203 * 20 18 16 41 41 H 1.09005 * 109.47077 * 150.28374 * 20 18 16 42 42 H 0.96995 * 119.99689 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2182 0.0677 2.2865 6 8 1.9969 1.2632 2.2558 7 6 2.7053 -0.5557 3.5194 8 6 2.9571 0.0866 4.7145 9 6 3.4035 -0.8857 5.6142 10 6 3.4151 -2.0760 4.9671 11 7 3.8239 -3.3710 5.5562 12 8 4.1892 -3.4237 6.7170 13 8 3.7949 -4.3838 4.8802 14 7 2.9892 -1.8909 3.6998 15 6 2.8544 -2.9372 2.6833 16 6 2.0324 -0.7103 -1.2306 17 8 2.6530 -1.7465 -1.1216 18 7 1.7918 -0.1940 -2.4521 19 6 1.0425 1.0580 -2.5836 20 6 2.2854 -0.8814 -3.6479 21 6 3.6681 -0.3821 -3.9797 22 1 4.1325 0.3722 -3.3618 23 6 4.3397 -0.8874 -5.0726 24 7 3.7739 -1.8055 -5.8254 25 14 6.0533 -0.2679 -5.4843 26 1 7.0628 -1.1059 -4.7887 27 1 6.2694 -0.3480 -6.9513 28 1 6.1897 1.1425 -5.0402 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.8330 1.1403 4.9164 33 1 3.6884 -0.7180 6.6423 34 1 3.7900 -3.0307 2.1319 35 1 2.6213 -3.8858 3.1670 36 1 2.0516 -2.6734 1.9947 37 1 -0.0212 0.8370 -2.6727 38 1 1.2123 1.6773 -1.7029 39 1 1.3786 1.5909 -3.4731 40 1 2.3218 -1.9546 -3.4611 41 1 1.6162 -0.6807 -4.4846 42 1 4.2463 -2.1607 -6.5945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761054695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:13 Heat of formation + Delta-G solvation = -72.080999 kcal Electronic energy + Delta-G solvation = -29673.538307 eV Core-core repulsion = 25237.669760 eV Total energy + Delta-G solvation = -4435.868547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.86419 -42.69485 -41.73060 -40.48216 -37.97667 -37.85672 -36.74203 -34.96040 -34.49242 -33.21967 -31.99433 -29.65204 -28.31596 -27.85375 -27.63671 -26.10578 -25.03752 -23.60703 -22.60676 -21.64028 -20.51547 -19.92975 -19.79081 -19.46559 -19.01111 -18.72605 -18.26546 -17.69628 -17.58233 -17.05831 -16.60769 -16.40897 -15.91718 -15.57386 -15.17059 -14.87737 -14.79096 -14.51600 -14.36767 -14.20234 -13.87245 -13.70081 -13.64338 -13.53830 -13.32786 -13.09705 -12.87569 -12.83904 -12.68793 -12.56566 -12.50126 -12.41273 -12.25384 -12.19553 -12.08688 -11.73929 -10.68666 -10.68263 -10.45956 -10.33886 -9.55276 -8.27129 -6.41537 -1.34803 -0.25971 -0.10198 0.89631 1.01673 1.21068 1.34435 1.36853 1.46168 1.54800 1.59549 2.21586 2.37652 3.03361 3.05962 3.32068 3.35546 3.47781 3.68281 3.76714 3.99608 4.03406 4.20341 4.29737 4.41120 4.52762 4.58026 4.63143 4.66370 4.71713 4.83126 4.85750 4.90108 5.00422 5.07767 5.18037 5.20516 5.32466 5.47264 5.74019 5.99779 6.19769 6.31959 6.55790 6.67516 7.15986 7.32171 8.80067 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002823 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.134641 B = 9914.918621 C =10918.680437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 H 0.123 0.877 4 O -0.339 6.339 5 C 0.539 3.461 6 O -0.488 6.488 7 C 0.018 3.982 8 C -0.085 4.085 9 C -0.082 4.082 10 C 0.063 3.937 11 N 0.056 4.944 12 O -0.118 6.118 13 O -0.203 6.203 14 N -0.392 5.392 15 C 0.050 3.950 16 C 0.500 3.500 17 O -0.576 6.576 18 N -0.598 5.598 19 C 0.067 3.933 20 C 0.260 3.740 21 C -0.546 4.546 22 H 0.052 0.948 23 C 0.011 3.989 24 N -0.925 5.925 25 Si 0.964 3.036 26 H -0.282 1.282 27 H -0.274 1.274 28 H -0.262 1.262 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.208 0.792 33 H 0.211 0.789 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.002 0.998 41 H 0.033 0.967 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 7.430 21.605 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 H 0.141 0.859 4 O -0.255 6.255 5 C 0.383 3.617 6 O -0.375 6.375 7 C -0.098 4.098 8 C -0.110 4.110 9 C -0.110 4.110 10 C -0.135 4.135 11 N 0.572 4.428 12 O -0.341 6.341 13 O -0.405 6.405 14 N -0.069 5.069 15 C -0.090 4.090 16 C 0.286 3.714 17 O -0.456 6.456 18 N -0.330 5.330 19 C -0.075 4.075 20 C 0.140 3.860 21 C -0.585 4.585 22 H 0.071 0.929 23 C -0.189 4.189 24 N -0.565 5.565 25 Si 0.788 3.212 26 H -0.209 1.209 27 H -0.199 1.199 28 H -0.186 1.186 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.087 0.913 32 H 0.225 0.775 33 H 0.228 0.772 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.020 0.980 41 H 0.051 0.949 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.584 7.379 20.751 23.293 hybrid contribution 1.164 -0.732 -0.858 1.620 sum -6.420 6.647 19.893 21.935 Atomic orbital electron populations 1.22330 0.88845 1.04621 1.06290 1.22680 0.98022 0.96927 0.80048 0.85939 1.86709 1.77146 1.41565 1.20070 1.19706 0.74586 0.84897 0.82490 1.90920 1.48282 1.14570 1.83767 1.20009 1.12296 0.82117 0.95387 1.21911 0.99658 1.01932 0.87528 1.21357 1.00430 0.86358 1.02885 1.21095 1.17947 0.86312 0.88136 1.42710 0.98135 1.01272 1.00684 1.94557 1.47346 1.92155 0.99993 1.94589 1.60272 1.24605 1.61072 1.43981 1.45358 1.08628 1.08948 1.22816 1.05849 0.89918 0.90383 1.20575 0.80208 0.85496 0.85082 1.90671 1.42226 1.26007 1.86711 1.48041 1.53880 1.25428 1.05652 1.22223 0.96551 0.84493 1.04222 1.18842 0.93729 0.91883 0.81589 1.21688 1.02125 1.23206 1.11445 0.92937 1.25800 1.02213 0.94960 0.95879 1.70030 1.39737 1.29104 1.17622 0.85473 0.79093 0.78992 0.77622 1.20852 1.19856 1.18621 0.88925 0.87151 0.91308 0.77481 0.77192 0.89566 0.86652 0.87217 0.89616 0.89163 0.90783 0.97970 0.94873 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.27 71.98 0.67 -2.55 16 2 C 0.08 2.25 2.17 29.85 0.06 2.32 16 3 H 0.12 3.11 6.15 -2.39 -0.01 3.10 16 4 O -0.34 -9.66 6.86 -51.73 -0.35 -10.01 16 5 C 0.54 13.22 7.89 69.97 0.55 13.78 16 6 O -0.49 -12.32 16.15 19.47 0.31 -12.01 16 7 C 0.02 0.38 6.88 40.32 0.28 0.66 16 8 C -0.08 -1.18 10.66 22.59 0.24 -0.94 16 9 C -0.08 -1.11 10.46 22.01 0.23 -0.88 16 10 C 0.06 1.28 7.85 128.09 1.01 2.28 16 11 N 0.06 1.31 4.45 -49.81 -0.22 1.09 16 12 O -0.12 -2.64 19.00 18.88 0.36 -2.28 16 13 O -0.20 -5.41 16.64 18.89 0.31 -5.10 16 14 N -0.39 -8.72 3.15 -523.37 -1.65 -10.37 16 15 C 0.05 1.17 9.96 127.77 1.27 2.44 16 16 C 0.50 19.77 7.10 87.66 0.62 20.39 16 17 O -0.58 -28.75 16.09 15.71 0.25 -28.50 16 18 N -0.60 -23.64 2.86 -851.12 -2.43 -26.07 16 19 C 0.07 1.75 8.92 127.77 1.14 2.89 16 20 C 0.26 13.41 5.16 85.63 0.44 13.85 16 21 C -0.55 -30.59 9.38 25.60 0.24 -30.35 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 23 C 0.01 0.62 5.46 84.65 0.46 1.08 16 24 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 25 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.11 1.76 5.12 -2.38 -0.01 1.75 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.21 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.21 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.12 2.50 6.20 -2.39 -0.01 2.48 16 36 H 0.11 2.70 6.16 -2.39 -0.01 2.68 16 37 H 0.09 1.70 7.04 -2.39 -0.02 1.68 16 38 H 0.09 1.81 6.06 -2.39 -0.01 1.79 16 39 H 0.07 2.07 8.07 -2.39 -0.02 2.05 16 40 H 0.00 0.13 7.43 -2.39 -0.02 0.11 16 41 H 0.03 1.71 8.07 -2.38 -0.02 1.69 16 42 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -75.67 367.48 7.19 -68.48 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.08 Total: 8.06 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 7.22 Total: 24.97 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -4.02 Total: -89.77 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: 0.89 Total: -57.90 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -75.67 7.19 -68.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761054695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.601 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds