Wall clock time and date at job start Sat Apr 11 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35461 * 116.99807 * 2 1 4 4 N 1.32399 * 119.07782 * 359.97438 * 3 2 1 5 5 C 1.32589 * 120.89357 * 180.02562 * 4 3 2 6 6 O 1.35504 * 120.45725 * 180.02562 * 5 4 3 7 7 C 1.39668 * 119.09042 * 359.97438 * 5 4 3 8 8 C 1.39154 * 118.31727 * 0.02562 * 7 5 4 9 9 C 1.48373 * 120.48336 * 179.97438 * 8 7 5 10 10 O 1.21387 * 120.00042 * 359.97438 * 9 8 7 11 11 O 1.34641 * 119.99756 * 180.02562 * 9 8 7 12 12 C 1.45198 * 116.99761 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.47206 * 30.00629 * 12 11 9 14 14 C 1.52996 * 109.47742 * 270.00284 * 12 11 9 15 15 C 1.50706 * 109.47101 * 150.00199 * 12 11 9 16 16 O 1.21281 * 119.99699 * 5.00057 * 15 12 11 17 17 N 1.34773 * 120.00080 * 185.00548 * 15 12 11 18 18 C 1.46499 * 120.00036 * 359.72107 * 17 15 12 19 19 C 1.46506 * 119.99969 * 180.02562 * 17 15 12 20 20 C 1.50703 * 109.46877 * 269.72057 * 19 17 15 21 21 H 1.08005 * 119.99817 * 0.02562 * 20 19 17 22 22 C 1.37871 * 120.00081 * 179.97438 * 20 19 17 23 23 N 1.31520 * 119.99848 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00321 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46938 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47198 * 120.00527 * 24 22 20 27 27 H 1.48498 * 109.47360 * 240.00281 * 24 22 20 28 28 N 1.32058 * 119.07631 * 180.25379 * 3 2 1 29 29 H 1.09002 * 109.46861 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47177 * 300.00156 * 1 2 3 31 31 H 1.09003 * 109.47184 * 60.00938 * 1 2 3 32 32 H 0.96701 * 113.99912 * 269.97447 * 6 5 4 33 33 H 1.07994 * 120.83818 * 180.02562 * 7 5 4 34 34 H 1.08996 * 109.47639 * 180.02562 * 14 12 11 35 35 H 1.09007 * 109.47052 * 300.00440 * 14 12 11 36 36 H 1.09002 * 109.46967 * 59.99917 * 14 12 11 37 37 H 1.09003 * 109.47269 * 270.27384 * 18 17 15 38 38 H 1.08994 * 109.47173 * 30.28203 * 18 17 15 39 39 H 1.09005 * 109.47077 * 150.28374 * 18 17 15 40 40 H 1.09000 * 109.46803 * 29.71536 * 19 17 15 41 41 H 1.09000 * 109.47214 * 149.72329 * 19 17 15 42 42 H 0.96998 * 119.99944 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3050 2.3056 -0.0005 5 6 1.8692 3.5055 -0.0010 6 8 1.1044 4.6241 -0.0010 7 6 3.2626 3.6007 -0.0005 8 6 4.0047 2.4235 0.0000 9 6 5.4877 2.4686 0.0000 10 8 6.0624 3.5378 -0.0009 11 8 6.1960 1.3235 0.0000 12 6 7.6430 1.4436 -0.0005 13 1 7.9318 2.3606 0.5131 14 6 8.1509 1.4855 -1.4431 15 6 8.2456 0.2589 0.7099 16 8 7.5337 -0.6459 1.0913 17 7 9.5755 0.2050 0.9215 18 6 10.4362 1.2952 0.4555 19 6 10.1614 -0.9468 1.6116 20 6 10.1969 -0.6793 3.0943 21 1 9.8204 0.2551 3.4836 22 6 10.7092 -1.6278 3.9539 23 7 11.1673 -2.7658 3.4798 24 14 10.7539 -1.2959 5.7916 25 1 10.1838 0.0476 6.0660 26 1 9.9538 -2.3268 6.5004 27 1 12.1590 -1.3449 6.2695 28 7 3.3636 1.2549 -0.0051 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 0.8824 4.9487 -0.8845 33 1 3.7517 4.5635 -0.0005 34 1 9.2371 1.5751 -1.4435 35 1 7.8621 0.5684 -1.9568 36 1 7.7150 2.3423 -1.9570 37 1 10.7692 1.0860 -0.5611 38 1 9.8771 2.2307 0.4695 39 1 11.3027 1.3798 1.1114 40 1 9.5573 -1.8329 1.4167 41 1 11.1756 -1.1112 1.2477 42 1 11.5280 -3.4330 4.0845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770519858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:28 Heat of formation + Delta-G solvation = -113.383908 kcal Electronic energy + Delta-G solvation = -29146.470895 eV Core-core repulsion = 24708.811319 eV Total energy + Delta-G solvation = -4437.659575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.96668 -40.69005 -39.18721 -38.94485 -37.76081 -36.60216 -34.91511 -33.91901 -32.87007 -31.75300 -31.50586 -27.97317 -27.71394 -26.46760 -26.06100 -24.53090 -24.18914 -22.72394 -21.52813 -19.83937 -19.28022 -18.88517 -18.07705 -17.46239 -16.88154 -16.83532 -16.51525 -16.22256 -16.12986 -15.76145 -15.51051 -15.30611 -14.90929 -14.62413 -14.30856 -13.94531 -13.54541 -13.35063 -12.93230 -12.84748 -12.42198 -12.36972 -12.20533 -12.11910 -11.74301 -11.65062 -11.47779 -11.40356 -11.21411 -11.20307 -11.18245 -10.89741 -10.78376 -10.58896 -10.16334 -9.90196 -9.62505 -9.53711 -8.90841 -8.44183 -7.72226 -6.05093 -4.09876 -0.14319 0.35199 1.80697 2.04272 2.25023 2.69661 3.20637 3.26813 3.30666 3.38693 3.43023 3.64682 3.87450 4.10844 4.29828 4.44837 4.58213 4.71769 4.82057 4.89434 4.91461 4.95223 5.03344 5.17669 5.29704 5.31509 5.48483 5.60474 5.61927 5.83544 5.95273 6.03194 6.15875 6.21053 6.54556 6.72487 6.97323 7.30031 7.40208 7.47641 7.55657 7.91121 8.20873 8.28924 8.85614 9.00246 9.55280 11.03138 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.002642 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.715946 B =10596.149542 C =11407.626230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.277 6.277 3 C 0.527 3.473 4 N -0.571 5.571 5 C 0.404 3.596 6 O -0.466 6.466 7 C -0.219 4.219 8 C 0.208 3.792 9 C 0.525 3.475 10 O -0.484 6.484 11 O -0.293 6.293 12 C 0.066 3.934 13 H 0.109 0.891 14 C -0.171 4.171 15 C 0.508 3.492 16 O -0.512 6.512 17 N -0.596 5.596 18 C 0.076 3.924 19 C 0.246 3.754 20 C -0.528 4.528 21 H 0.058 0.942 22 C 0.061 3.939 23 N -0.894 5.894 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.283 1.283 28 N -0.474 5.474 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.414 0.586 33 H 0.174 0.826 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.652 14.938 -13.436 26.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.177 6.177 3 C 0.224 3.776 4 N -0.312 5.312 5 C 0.214 3.786 6 O -0.274 6.274 7 C -0.243 4.243 8 C 0.062 3.938 9 C 0.366 3.634 10 O -0.371 6.371 11 O -0.205 6.205 12 C 0.008 3.992 13 H 0.127 0.873 14 C -0.228 4.228 15 C 0.292 3.708 16 O -0.387 6.387 17 N -0.330 5.330 18 C -0.068 4.068 19 C 0.128 3.872 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.209 1.209 28 N -0.203 5.203 29 H 0.127 0.873 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.274 0.726 33 H 0.192 0.808 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.071 13.355 -12.580 25.752 hybrid contribution 0.185 1.252 0.664 1.429 sum -17.887 14.607 -11.916 25.987 Atomic orbital electron populations 1.23096 0.75135 1.04138 1.02957 1.86225 1.23698 1.21398 1.86397 1.20214 0.85018 0.84098 0.88236 1.67459 1.43257 0.99251 1.21271 1.18821 0.86364 0.84587 0.88778 1.84754 1.71037 1.37012 1.34615 1.22761 0.93809 1.01361 1.06408 1.20064 0.91779 0.87755 0.94219 1.20446 0.86644 0.82897 0.73398 1.90858 1.70414 1.30673 1.45126 1.86801 1.20283 1.31947 1.81507 1.22833 0.76599 1.00722 0.99070 0.87334 1.22301 1.03279 1.03732 0.93482 1.19678 0.83226 0.87140 0.80802 1.90744 1.59580 1.38250 1.50125 1.48063 1.04989 1.23056 1.56863 1.21850 0.96150 0.89488 0.99311 1.19369 0.93625 0.82929 0.91299 1.21463 1.40794 1.02829 0.91591 0.92354 1.24932 0.95175 0.94820 0.99147 1.69941 1.41276 1.06875 1.35197 0.86431 0.77531 0.78420 0.84982 1.19793 1.20821 1.20933 1.67663 1.07566 1.28561 1.16558 0.87309 0.91597 0.91700 0.72595 0.80849 0.88989 0.90675 0.91236 0.93100 0.92365 0.90247 0.93563 0.94550 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.36 101.05 1.05 1.36 16 2 O -0.28 -3.42 10.56 -18.07 -0.19 -3.61 16 3 C 0.53 6.94 8.48 -91.41 -0.78 6.16 16 4 N -0.57 -6.26 9.22 -14.79 -0.14 -6.40 16 5 C 0.40 3.73 7.83 -16.69 -0.13 3.60 16 6 O -0.47 -2.92 13.57 -18.20 -0.25 -3.17 16 7 C -0.22 -2.17 9.67 -38.71 -0.37 -2.55 16 8 C 0.21 2.79 6.78 -82.72 -0.56 2.23 16 9 C 0.53 7.92 7.94 34.90 0.28 8.19 16 10 O -0.48 -7.15 15.67 -19.18 -0.30 -7.45 16 11 O -0.29 -5.20 9.27 -46.99 -0.44 -5.63 16 12 C 0.07 1.10 2.17 -27.88 -0.06 1.04 16 13 H 0.11 1.67 6.16 -51.93 -0.32 1.35 16 14 C -0.17 -2.16 9.27 37.16 0.34 -1.82 16 15 C 0.51 11.02 7.10 -10.98 -0.08 10.94 16 16 O -0.51 -13.67 16.08 -14.05 -0.23 -13.90 16 17 N -0.60 -12.62 2.86 -182.95 -0.52 -13.15 16 18 C 0.08 1.16 8.92 59.85 0.53 1.69 16 19 C 0.25 6.44 5.17 -5.19 -0.03 6.41 16 20 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 21 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 22 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 24 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 N -0.47 -7.21 10.27 -11.37 -0.12 -7.33 16 29 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.41 0.24 9.06 45.56 0.41 0.65 16 33 H 0.17 1.36 7.72 -52.49 -0.41 0.95 16 34 H 0.09 1.01 5.10 -51.93 -0.26 0.74 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.64 7.01 -51.93 -0.36 0.27 16 38 H 0.06 0.74 6.08 -51.93 -0.32 0.42 16 39 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.05 1.36 7.41 -51.93 -0.38 0.98 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -38.18 371.60 -5.22 -43.40 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -4.13 Total: -3.08 kcal Atomic # 6 Polarization: 23.77 SS G_CDS: -0.23 Total: 23.55 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.04 Total: -52.78 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.40 Total: -33.75 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.18 -5.22 -43.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770519858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.981 kcal (2) G-P(sol) polarization free energy of solvation -38.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds