Wall clock time and date at job start Sat Apr 11 2020 05:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35461 * 116.99807 * 2 1 4 4 N 1.32399 * 119.07782 * 359.97438 * 3 2 1 5 5 C 1.32589 * 120.89357 * 180.02562 * 4 3 2 6 6 O 1.35504 * 120.45725 * 180.02562 * 5 4 3 7 7 C 1.39668 * 119.09042 * 359.97438 * 5 4 3 8 8 C 1.39154 * 118.31727 * 0.02562 * 7 5 4 9 9 C 1.48373 * 120.48336 * 179.97438 * 8 7 5 10 10 O 1.21387 * 120.00042 * 359.97438 * 9 8 7 11 11 O 1.34641 * 119.99756 * 180.02562 * 9 8 7 12 12 C 1.45198 * 116.99761 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.47206 * 30.00629 * 12 11 9 14 14 C 1.52996 * 109.47742 * 270.00284 * 12 11 9 15 15 C 1.50706 * 109.47101 * 150.00199 * 12 11 9 16 16 O 1.21281 * 119.99699 * 5.00057 * 15 12 11 17 17 N 1.34773 * 120.00080 * 185.00548 * 15 12 11 18 18 C 1.46499 * 120.00036 * 359.72107 * 17 15 12 19 19 C 1.46506 * 119.99969 * 180.02562 * 17 15 12 20 20 C 1.50703 * 109.46877 * 269.72057 * 19 17 15 21 21 H 1.08005 * 119.99817 * 0.02562 * 20 19 17 22 22 C 1.37871 * 120.00081 * 179.97438 * 20 19 17 23 23 N 1.31520 * 119.99848 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00321 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46938 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47198 * 120.00527 * 24 22 20 27 27 H 1.48498 * 109.47360 * 240.00281 * 24 22 20 28 28 N 1.32058 * 119.07631 * 180.25379 * 3 2 1 29 29 H 1.09002 * 109.46861 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47177 * 300.00156 * 1 2 3 31 31 H 1.09003 * 109.47184 * 60.00938 * 1 2 3 32 32 H 0.96701 * 113.99912 * 269.97447 * 6 5 4 33 33 H 1.07994 * 120.83818 * 180.02562 * 7 5 4 34 34 H 1.08996 * 109.47639 * 180.02562 * 14 12 11 35 35 H 1.09007 * 109.47052 * 300.00440 * 14 12 11 36 36 H 1.09002 * 109.46967 * 59.99917 * 14 12 11 37 37 H 1.09003 * 109.47269 * 270.27384 * 18 17 15 38 38 H 1.08994 * 109.47173 * 30.28203 * 18 17 15 39 39 H 1.09005 * 109.47077 * 150.28374 * 18 17 15 40 40 H 1.09000 * 109.46803 * 29.71536 * 19 17 15 41 41 H 1.09000 * 109.47214 * 149.72329 * 19 17 15 42 42 H 0.96998 * 119.99944 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2070 0.0000 4 7 1.3050 2.3056 -0.0005 5 6 1.8692 3.5055 -0.0010 6 8 1.1044 4.6241 -0.0010 7 6 3.2626 3.6007 -0.0005 8 6 4.0047 2.4235 0.0000 9 6 5.4877 2.4686 0.0000 10 8 6.0624 3.5378 -0.0009 11 8 6.1960 1.3235 0.0000 12 6 7.6430 1.4436 -0.0005 13 1 7.9318 2.3606 0.5131 14 6 8.1509 1.4855 -1.4431 15 6 8.2456 0.2589 0.7099 16 8 7.5337 -0.6459 1.0913 17 7 9.5755 0.2050 0.9215 18 6 10.4362 1.2952 0.4555 19 6 10.1614 -0.9468 1.6116 20 6 10.1969 -0.6793 3.0943 21 1 9.8204 0.2551 3.4836 22 6 10.7092 -1.6278 3.9539 23 7 11.1673 -2.7658 3.4798 24 14 10.7539 -1.2959 5.7916 25 1 10.1838 0.0476 6.0660 26 1 9.9538 -2.3268 6.5004 27 1 12.1590 -1.3449 6.2695 28 7 3.3636 1.2549 -0.0051 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 0.8824 4.9487 -0.8845 33 1 3.7517 4.5635 -0.0005 34 1 9.2371 1.5751 -1.4435 35 1 7.8621 0.5684 -1.9568 36 1 7.7150 2.3423 -1.9570 37 1 10.7692 1.0860 -0.5611 38 1 9.8771 2.2307 0.4695 39 1 11.3027 1.3798 1.1114 40 1 9.5573 -1.8329 1.4167 41 1 11.1756 -1.1112 1.2477 42 1 11.5280 -3.4330 4.0845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770519858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:26 Heat of formation + Delta-G solvation = -147.102012 kcal Electronic energy + Delta-G solvation = -29147.933021 eV Core-core repulsion = 24708.811319 eV Total energy + Delta-G solvation = -4439.121702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.85579 -41.89575 -40.58324 -39.86117 -38.51071 -37.85242 -36.71322 -34.95510 -34.71803 -33.02543 -32.50136 -29.62957 -28.63165 -27.70639 -27.25295 -25.93484 -25.22213 -24.27410 -22.69810 -20.72862 -20.48050 -20.14906 -18.94767 -18.71861 -18.37466 -18.20070 -17.81256 -17.35283 -17.27450 -17.04459 -16.69065 -16.42936 -16.21894 -15.90048 -15.64119 -14.98981 -14.84747 -14.60110 -14.33824 -14.14597 -13.71467 -13.52475 -13.46498 -13.33127 -13.06177 -12.99984 -12.82931 -12.64341 -12.52989 -12.38100 -12.32024 -12.22217 -12.15601 -12.06889 -12.02259 -11.69616 -10.79890 -10.66092 -10.62924 -10.35548 -9.51838 -8.24603 -6.38978 -1.06669 -0.43220 0.79734 1.00301 1.31283 1.35237 1.38253 1.49478 1.61624 1.97754 2.20812 2.32235 2.39327 2.97133 3.05508 3.06785 3.37785 3.48275 3.67343 3.81096 3.91381 3.96049 4.34220 4.35670 4.36081 4.50038 4.56926 4.61459 4.68975 4.71395 4.85631 4.92856 5.01734 5.11439 5.20165 5.23798 5.51005 5.76841 5.77873 6.02884 6.17951 6.40069 6.59032 6.66262 6.70138 7.20494 7.35549 8.83029 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.002642 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.715946 B =10596.149542 C =11407.626230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.302 6.302 3 C 0.518 3.482 4 N -0.567 5.567 5 C 0.420 3.580 6 O -0.460 6.460 7 C -0.198 4.198 8 C 0.186 3.814 9 C 0.527 3.473 10 O -0.483 6.483 11 O -0.322 6.322 12 C 0.075 3.925 13 H 0.127 0.873 14 C -0.162 4.162 15 C 0.497 3.503 16 O -0.579 6.579 17 N -0.599 5.599 18 C 0.067 3.933 19 C 0.259 3.741 20 C -0.545 4.545 21 H 0.052 0.948 22 C 0.009 3.991 23 N -0.926 5.926 24 Si 0.967 3.033 25 H -0.269 1.269 26 H -0.283 1.283 27 H -0.266 1.266 28 N -0.522 5.522 29 H 0.131 0.869 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.440 0.560 33 H 0.199 0.801 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.075 0.925 40 H -0.001 1.001 41 H 0.036 0.964 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.296 18.159 -13.849 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.203 6.203 3 C 0.215 3.785 4 N -0.309 5.309 5 C 0.229 3.771 6 O -0.273 6.273 7 C -0.222 4.222 8 C 0.042 3.958 9 C 0.368 3.632 10 O -0.369 6.369 11 O -0.236 6.236 12 C 0.017 3.983 13 H 0.144 0.856 14 C -0.219 4.219 15 C 0.284 3.716 16 O -0.458 6.458 17 N -0.331 5.331 18 C -0.075 4.075 19 C 0.138 3.862 20 C -0.584 4.584 21 H 0.070 0.930 22 C -0.190 4.190 23 N -0.566 5.566 24 Si 0.791 3.209 25 H -0.193 1.193 26 H -0.209 1.209 27 H -0.191 1.191 28 N -0.252 5.252 29 H 0.149 0.851 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.306 0.694 33 H 0.216 0.784 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.017 0.983 41 H 0.053 0.947 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.694 16.653 -13.048 28.232 hybrid contribution 0.272 0.324 0.744 0.856 sum -18.422 16.977 -12.304 27.910 Atomic orbital electron populations 1.23388 0.72917 1.05876 1.03526 1.86197 1.26001 1.21693 1.86393 1.20249 0.84701 0.84850 0.88654 1.67561 1.42751 0.99363 1.21231 1.18917 0.86432 0.84868 0.86835 1.84733 1.70230 1.35380 1.36930 1.22967 0.93941 1.00982 1.04316 1.20014 0.90944 0.88614 0.96248 1.20707 0.87295 0.82195 0.72996 1.90832 1.70636 1.30146 1.45282 1.86795 1.20787 1.33863 1.82134 1.22779 0.76545 0.98004 1.00927 0.85576 1.22331 1.04613 1.04422 0.90568 1.20640 0.82930 0.87954 0.80053 1.90701 1.61131 1.41069 1.52916 1.48043 1.05837 1.23132 1.56067 1.22234 0.95544 0.88797 1.00880 1.18858 0.92684 0.83532 0.91089 1.21724 1.40891 1.02778 0.92976 0.92951 1.25838 0.94636 0.94515 1.04058 1.70049 1.41824 1.07725 1.37009 0.85377 0.78307 0.78201 0.78972 1.19295 1.20877 1.19062 1.67497 1.09021 1.30077 1.18628 0.85084 0.91464 0.90562 0.69361 0.78392 0.86822 0.91631 0.88660 0.89586 0.89093 0.90612 0.98260 0.94651 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.36 113.37 1.17 1.70 16 2 O -0.30 -7.62 10.56 -87.59 -0.92 -8.55 16 3 C 0.52 13.75 8.48 180.62 1.53 15.29 16 4 N -0.57 -11.71 9.22 -426.42 -3.93 -15.64 16 5 C 0.42 6.74 7.83 84.92 0.67 7.41 16 6 O -0.46 -4.09 13.57 -88.05 -1.20 -5.29 16 7 C -0.20 -3.50 9.67 22.84 0.22 -3.28 16 8 C 0.19 4.92 6.78 41.84 0.28 5.20 16 9 C 0.53 15.58 7.94 70.52 0.56 16.15 16 10 O -0.48 -13.30 15.67 20.20 0.32 -12.98 16 11 O -0.32 -11.61 9.27 -49.13 -0.46 -12.07 16 12 C 0.08 2.45 2.17 29.85 0.06 2.52 16 13 H 0.13 3.62 6.16 -2.38 -0.01 3.60 16 14 C -0.16 -3.77 9.27 71.98 0.67 -3.10 16 15 C 0.50 22.19 7.10 87.66 0.62 22.81 16 16 O -0.58 -32.83 16.08 15.72 0.25 -32.58 16 17 N -0.60 -25.68 2.86 -851.11 -2.43 -28.11 16 18 C 0.07 1.90 8.92 127.77 1.14 3.04 16 19 C 0.26 14.12 5.17 85.63 0.44 14.56 16 20 C -0.55 -31.92 9.39 25.60 0.24 -31.68 16 21 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 22 C 0.01 0.51 5.46 84.65 0.46 0.97 16 23 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 24 Si 0.97 45.70 29.54 68.60 2.03 47.72 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 26 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 N -0.52 -16.31 10.27 -302.95 -3.11 -19.42 16 29 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 31 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 32 H 0.44 -1.32 9.06 -74.06 -0.67 -1.99 16 33 H 0.20 2.43 7.72 -2.91 -0.02 2.40 16 34 H 0.11 2.10 5.10 -2.39 -0.01 2.08 16 35 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.87 7.01 -2.39 -0.02 1.86 16 38 H 0.09 2.00 6.08 -2.39 -0.01 1.99 16 39 H 0.08 2.24 8.07 -2.38 -0.02 2.22 16 40 H 0.00 -0.05 7.41 -2.39 -0.02 -0.06 16 41 H 0.04 1.90 8.07 -2.39 -0.02 1.88 16 42 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -88.38 371.60 -0.67 -89.05 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 0.42 Total: 2.50 kcal Atomic # 6 Polarization: 43.50 SS G_CDS: 8.07 Total: 51.58 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -9.19 Total: -119.39 kcal Atomic # 8 Polarization: -69.46 SS G_CDS: -2.01 Total: -71.47 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -88.38 -0.67 -89.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770519858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.049 kcal (2) G-P(sol) polarization free energy of solvation -88.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds