Wall clock time and date at job start Sat Apr 11 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86804 * 120.00238 * 2 1 4 4 H 1.48504 * 109.46936 * 275.40326 * 3 2 1 5 5 H 1.48497 * 109.46821 * 35.40179 * 3 2 1 6 6 H 1.48496 * 109.47116 * 155.40182 * 3 2 1 7 7 C 1.39947 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00142 * 342.01022 * 7 2 1 9 9 C 1.41402 * 120.00049 * 162.01526 * 7 2 1 10 10 C 1.40733 * 120.24034 * 329.99328 * 9 7 2 11 11 C 1.37605 * 119.74217 * 180.32219 * 10 9 7 12 12 C 1.38657 * 120.24543 * 359.65618 * 11 10 9 13 13 C 1.38605 * 120.50405 * 0.02647 * 12 11 10 14 14 C 1.37639 * 120.24857 * 0.02562 * 13 12 11 15 15 C 1.50708 * 120.13082 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46954 * 265.00293 * 15 14 13 17 17 O 1.21282 * 120.00025 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99804 * 180.02562 * 16 15 14 19 19 C 1.46499 * 119.99622 * 180.02562 * 18 16 15 20 20 C 1.50705 * 109.47131 * 179.97438 * 19 18 16 21 21 C 1.38251 * 119.92568 * 270.02257 * 20 19 18 22 22 C 1.38243 * 120.13992 * 179.74679 * 21 20 19 23 23 C 1.38534 * 120.03244 * 0.42895 * 22 21 20 24 24 C 1.39272 * 119.82781 * 359.56614 * 23 22 21 25 25 C 1.38229 * 119.93021 * 89.99375 * 20 19 18 26 26 O 1.36496 * 108.64646 * 180.25155 * 24 23 22 27 27 C 1.43988 * 105.48340 * 342.72309 * 26 24 23 28 28 O 1.36504 * 131.53692 * 179.87941 * 23 22 21 29 29 H 0.97002 * 120.00321 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.13380 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.87414 * 179.67792 * 11 10 9 32 32 H 1.08002 * 119.74433 * 180.02562 * 12 11 10 33 33 H 1.08005 * 119.87945 * 179.97438 * 13 12 11 34 34 H 1.08994 * 109.47183 * 144.99639 * 15 14 13 35 35 H 1.09007 * 109.46803 * 24.99784 * 15 14 13 36 36 H 0.96994 * 120.00059 * 359.97438 * 18 16 15 37 37 H 1.08994 * 109.47827 * 59.99661 * 19 18 16 38 38 H 1.09007 * 109.47015 * 299.99282 * 19 18 16 39 39 H 1.08000 * 119.93218 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.98062 * 180.32570 * 22 21 20 41 41 H 1.08007 * 119.98738 * 0.02948 * 25 20 19 42 42 H 1.09009 * 110.57455 * 268.55276 * 27 26 24 43 43 H 1.08995 * 110.57560 * 145.67968 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3756 2.1123 -1.3939 5 1 1.5014 2.6170 0.8111 6 1 3.5922 1.4099 0.5828 7 6 2.0079 -1.2120 -0.0005 8 1 1.5074 -2.1246 0.2879 9 6 3.3701 -1.2418 -0.3787 10 6 3.8681 -0.3103 -1.3086 11 6 5.1939 -0.3528 -1.6743 12 6 6.0398 -1.3042 -1.1248 13 6 5.5617 -2.2223 -0.2031 14 6 4.2389 -2.1991 0.1765 15 6 3.7217 -3.1990 1.1785 16 6 3.1186 -4.3730 0.4512 17 8 3.1092 -4.3953 -0.7614 18 7 2.5888 -5.3976 1.1482 19 6 2.0030 -6.5391 0.4410 20 6 1.4857 -7.5390 1.4429 21 6 2.3144 -8.5447 1.9046 22 6 1.8461 -9.4612 2.8276 23 6 0.5412 -9.3789 3.2857 24 6 -0.2936 -8.3657 2.8207 25 6 0.1839 -7.4483 1.8988 26 8 -1.5131 -8.4958 3.4198 27 6 -1.5429 -9.8365 3.9440 28 8 -0.1554 -10.1439 4.1760 29 1 -0.4851 0.8400 0.0004 30 1 3.2109 0.4315 -1.7379 31 1 5.5772 0.3577 -2.3917 32 1 7.0792 -1.3300 -1.4173 33 1 6.2294 -2.9593 0.2183 34 1 2.9617 -2.7285 1.8022 35 1 4.5441 -3.5436 1.8056 36 1 2.5960 -5.3796 2.1179 37 1 2.7634 -7.0098 -0.1820 38 1 1.1810 -6.1948 -0.1867 39 1 3.3309 -8.6124 1.5462 40 1 2.4973 -10.2426 3.1904 41 1 -0.4614 -6.6616 1.5364 42 1 -1.9704 -10.5239 3.2139 43 1 -2.1040 -9.8704 4.8778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776725277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:41 Heat of formation + Delta-G solvation = -53.369979 kcal Electronic energy + Delta-G solvation = -27797.494027 eV Core-core repulsion = 23773.286114 eV Total energy + Delta-G solvation = -4024.207913 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.43874 -39.44324 -38.39821 -37.44097 -36.56757 -34.33968 -33.54154 -31.92995 -31.01401 -30.51192 -30.26003 -27.50573 -26.33942 -25.33311 -24.57383 -23.24078 -22.11228 -21.35308 -20.50594 -19.40276 -18.21865 -17.91450 -17.64704 -17.30353 -16.73229 -16.08420 -15.88992 -15.42351 -15.07716 -14.73888 -14.59352 -14.27795 -14.12517 -13.88100 -13.68615 -13.56016 -13.25907 -13.17605 -12.97611 -12.67527 -12.38789 -12.21130 -12.05422 -11.84445 -11.37761 -11.36076 -11.14807 -11.03701 -10.76259 -10.68698 -10.21011 -9.66589 -9.51826 -9.33155 -9.08440 -9.06276 -8.71398 -8.33138 -7.54863 -7.45260 -6.89066 -4.42809 0.76999 0.93856 2.44591 2.60983 2.76533 3.12252 3.15825 3.17621 3.25480 3.34601 3.36633 3.87722 4.02943 4.18571 4.33403 4.46231 4.56923 4.62623 4.76221 4.87481 4.94707 5.20907 5.36157 5.49240 5.61396 5.72577 5.79369 5.82522 5.91983 5.93083 6.05743 6.09648 6.13456 6.23616 6.29090 6.33837 6.63234 6.75869 6.77049 6.82859 7.00251 7.25563 7.48002 7.71076 7.79363 7.93411 7.97475 8.19583 8.41155 8.73520 8.86122 8.87620 10.13136 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016182 B = 0.002534 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.878685 B =11048.667707 C =12379.734871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.085 3.915 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.444 4.444 8 H 0.089 0.911 9 C 0.109 3.891 10 C -0.234 4.234 11 C -0.080 4.080 12 C -0.243 4.243 13 C -0.069 4.069 14 C -0.166 4.166 15 C -0.074 4.074 16 C 0.517 3.483 17 O -0.520 6.520 18 N -0.741 5.741 19 C 0.165 3.835 20 C -0.090 4.090 21 C -0.091 4.091 22 C -0.102 4.102 23 C 0.033 3.967 24 C 0.030 3.970 25 C -0.080 4.080 26 O -0.307 6.307 27 C 0.213 3.787 28 O -0.311 6.311 29 H 0.283 0.717 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.398 0.602 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.084 0.916 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 -17.312 8.505 19.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.167 1.167 7 C -0.472 4.472 8 H 0.107 0.893 9 C 0.106 3.894 10 C -0.253 4.253 11 C -0.099 4.099 12 C -0.262 4.262 13 C -0.087 4.087 14 C -0.168 4.168 15 C -0.113 4.113 16 C 0.304 3.696 17 O -0.394 6.394 18 N -0.396 5.396 19 C 0.042 3.958 20 C -0.090 4.090 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.012 4.012 24 C -0.015 4.015 25 C -0.099 4.099 26 O -0.223 6.223 27 C 0.101 3.899 28 O -0.227 6.227 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.231 0.769 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.101 0.899 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.464 -17.235 7.799 18.923 hybrid contribution -0.190 0.541 0.499 0.761 sum -0.654 -16.693 8.298 18.654 Atomic orbital electron populations 1.69706 1.08066 1.30057 1.35606 1.26152 0.94668 1.01657 0.90908 0.86349 0.81325 0.79928 0.78781 1.19790 1.22042 1.16675 1.19413 0.93013 0.95713 1.39088 0.89295 1.17487 0.92637 0.90149 0.89097 1.20998 0.95549 1.04627 1.04093 1.20596 0.93925 0.97272 0.98073 1.20328 0.98170 1.01851 1.05853 1.20428 0.94611 0.96917 0.96791 1.19071 0.93066 1.01566 1.03086 1.20295 1.00627 0.92575 0.97850 1.21137 0.77228 0.82814 0.88391 1.90697 1.55934 1.78623 1.14112 1.46156 1.62985 1.20346 1.10067 1.20041 0.98589 0.85050 0.92156 1.19699 0.92694 0.97410 0.99234 1.20913 1.00099 0.93559 0.96355 1.20060 0.92062 1.01412 0.98568 1.19866 0.95076 0.93137 0.93094 1.19761 0.85322 0.98396 0.97972 1.20088 0.95994 0.98810 0.95018 1.87399 1.32701 1.32163 1.70077 1.25634 0.82646 0.81138 1.00463 1.87359 1.18289 1.62828 1.54220 0.90626 0.88360 0.89049 0.89039 0.89094 0.88142 0.90292 0.76875 0.90526 0.90489 0.84093 0.84574 0.84159 0.89870 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.72 13.93 55.55 0.77 -20.95 16 2 C 0.08 2.23 5.41 -17.34 -0.09 2.13 16 3 Si 0.91 21.00 24.52 -169.99 -4.17 16.84 16 4 H -0.27 -6.19 6.71 56.52 0.38 -5.81 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.24 -5.72 6.85 56.52 0.39 -5.33 16 7 C -0.44 -11.95 8.56 -37.74 -0.32 -12.27 16 8 H 0.09 2.51 6.99 -52.48 -0.37 2.14 16 9 C 0.11 2.81 5.10 -106.82 -0.54 2.27 16 10 C -0.23 -5.86 7.17 -38.87 -0.28 -6.14 16 11 C -0.08 -1.82 10.02 -39.66 -0.40 -2.22 16 12 C -0.24 -5.24 10.05 -39.29 -0.39 -5.64 16 13 C -0.07 -1.49 9.66 -39.66 -0.38 -1.87 16 14 C -0.17 -3.81 4.43 -103.91 -0.46 -4.27 16 15 C -0.07 -1.38 5.19 -29.03 -0.15 -1.53 16 16 C 0.52 9.78 7.42 -10.99 -0.08 9.70 16 17 O -0.52 -12.23 16.03 5.56 0.09 -12.14 16 18 N -0.74 -10.47 5.55 -61.47 -0.34 -10.81 16 19 C 0.17 2.09 5.79 -5.19 -0.03 2.06 16 20 C -0.09 -0.95 5.25 -104.62 -0.55 -1.49 16 21 C -0.09 -0.81 9.69 -39.57 -0.38 -1.19 16 22 C -0.10 -0.93 10.06 -39.47 -0.40 -1.33 16 23 C 0.03 0.35 7.15 -39.09 -0.28 0.07 16 24 C 0.03 0.35 7.15 -39.08 -0.28 0.07 16 25 C -0.08 -0.91 9.71 -39.47 -0.38 -1.29 16 26 O -0.31 -3.47 11.40 -45.68 -0.52 -3.99 16 27 C 0.21 1.64 8.89 101.05 0.90 2.54 16 28 O -0.31 -3.19 11.40 -45.70 -0.52 -3.72 16 29 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 30 H 0.10 2.46 4.74 -52.49 -0.25 2.21 16 31 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 34 H 0.10 1.89 7.15 -51.93 -0.37 1.52 16 35 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 36 H 0.40 4.60 8.46 -40.82 -0.35 4.26 16 37 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 42 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 364.70 15.07 5.50 5.50 Total: -1.00 -32.95 364.70 -8.85 -41.80 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.14 Total: 7.89 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -4.51 Total: -20.41 kcal Atomic # 7 Polarization: -32.19 SS G_CDS: 0.43 Total: -31.76 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.95 Total: -19.85 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.17 Total: 16.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.95 -8.85 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776725277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.575 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds