Wall clock time and date at job start Sat Apr 11 2020 05:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86804 * 120.00238 * 2 1 4 4 H 1.48504 * 109.46936 * 275.40326 * 3 2 1 5 5 H 1.48497 * 109.46821 * 35.40179 * 3 2 1 6 6 H 1.48496 * 109.47116 * 155.40182 * 3 2 1 7 7 C 1.39947 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00142 * 342.01022 * 7 2 1 9 9 C 1.41402 * 120.00049 * 162.01526 * 7 2 1 10 10 C 1.40733 * 120.24034 * 329.99328 * 9 7 2 11 11 C 1.37605 * 119.74217 * 180.32219 * 10 9 7 12 12 C 1.38657 * 120.24543 * 359.65618 * 11 10 9 13 13 C 1.38605 * 120.50405 * 0.02647 * 12 11 10 14 14 C 1.37639 * 120.24857 * 0.02562 * 13 12 11 15 15 C 1.50708 * 120.13082 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.46954 * 265.00293 * 15 14 13 17 17 O 1.21282 * 120.00025 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99804 * 180.02562 * 16 15 14 19 19 C 1.46499 * 119.99622 * 180.02562 * 18 16 15 20 20 C 1.50705 * 109.47131 * 179.97438 * 19 18 16 21 21 C 1.38251 * 119.92568 * 270.02257 * 20 19 18 22 22 C 1.38243 * 120.13992 * 179.74679 * 21 20 19 23 23 C 1.38534 * 120.03244 * 0.42895 * 22 21 20 24 24 C 1.39272 * 119.82781 * 359.56614 * 23 22 21 25 25 C 1.38229 * 119.93021 * 89.99375 * 20 19 18 26 26 O 1.36496 * 108.64646 * 180.25155 * 24 23 22 27 27 C 1.43988 * 105.48340 * 342.72309 * 26 24 23 28 28 O 1.36504 * 131.53692 * 179.87941 * 23 22 21 29 29 H 0.97002 * 120.00321 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.13380 * 359.97438 * 10 9 7 31 31 H 1.07997 * 119.87414 * 179.67792 * 11 10 9 32 32 H 1.08002 * 119.74433 * 180.02562 * 12 11 10 33 33 H 1.08005 * 119.87945 * 179.97438 * 13 12 11 34 34 H 1.08994 * 109.47183 * 144.99639 * 15 14 13 35 35 H 1.09007 * 109.46803 * 24.99784 * 15 14 13 36 36 H 0.96994 * 120.00059 * 359.97438 * 18 16 15 37 37 H 1.08994 * 109.47827 * 59.99661 * 19 18 16 38 38 H 1.09007 * 109.47015 * 299.99282 * 19 18 16 39 39 H 1.08000 * 119.93218 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.98062 * 180.32570 * 22 21 20 41 41 H 1.08007 * 119.98738 * 0.02948 * 25 20 19 42 42 H 1.09009 * 110.57455 * 268.55276 * 27 26 24 43 43 H 1.08995 * 110.57560 * 145.67968 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3756 2.1123 -1.3939 5 1 1.5014 2.6170 0.8111 6 1 3.5922 1.4099 0.5828 7 6 2.0079 -1.2120 -0.0005 8 1 1.5074 -2.1246 0.2879 9 6 3.3701 -1.2418 -0.3787 10 6 3.8681 -0.3103 -1.3086 11 6 5.1939 -0.3528 -1.6743 12 6 6.0398 -1.3042 -1.1248 13 6 5.5617 -2.2223 -0.2031 14 6 4.2389 -2.1991 0.1765 15 6 3.7217 -3.1990 1.1785 16 6 3.1186 -4.3730 0.4512 17 8 3.1092 -4.3953 -0.7614 18 7 2.5888 -5.3976 1.1482 19 6 2.0030 -6.5391 0.4410 20 6 1.4857 -7.5390 1.4429 21 6 2.3144 -8.5447 1.9046 22 6 1.8461 -9.4612 2.8276 23 6 0.5412 -9.3789 3.2857 24 6 -0.2936 -8.3657 2.8207 25 6 0.1839 -7.4483 1.8988 26 8 -1.5131 -8.4958 3.4198 27 6 -1.5429 -9.8365 3.9440 28 8 -0.1554 -10.1439 4.1760 29 1 -0.4851 0.8400 0.0004 30 1 3.2109 0.4315 -1.7379 31 1 5.5772 0.3577 -2.3917 32 1 7.0792 -1.3300 -1.4173 33 1 6.2294 -2.9593 0.2183 34 1 2.9617 -2.7285 1.8022 35 1 4.5441 -3.5436 1.8056 36 1 2.5960 -5.3796 2.1179 37 1 2.7634 -7.0098 -0.1820 38 1 1.1810 -6.1948 -0.1867 39 1 3.3309 -8.6124 1.5462 40 1 2.4973 -10.2426 3.1904 41 1 -0.4614 -6.6616 1.5364 42 1 -1.9704 -10.5239 3.2139 43 1 -2.1040 -9.8704 4.8778 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776725277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:40 Heat of formation + Delta-G solvation = -74.916815 kcal Electronic energy + Delta-G solvation = -27798.428368 eV Core-core repulsion = 23773.286114 eV Total energy + Delta-G solvation = -4025.142254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.18566 -40.86728 -39.57373 -38.93488 -37.33505 -35.59478 -35.45827 -33.54651 -32.16163 -31.94477 -31.36505 -28.90976 -27.37412 -26.66275 -25.94762 -24.02696 -23.22429 -22.95172 -22.05823 -20.98344 -19.22919 -18.97895 -18.77561 -18.39622 -17.84623 -17.55646 -17.15505 -16.76344 -16.50669 -16.05696 -15.71030 -15.49784 -15.40805 -15.19230 -14.90921 -14.70033 -14.55278 -14.34160 -14.03150 -13.91153 -13.78230 -13.65010 -13.57805 -13.13192 -13.02190 -12.66368 -12.62448 -12.46961 -12.14729 -11.97172 -11.87735 -11.50882 -11.34263 -10.94841 -10.81126 -10.03033 -9.93020 -9.36657 -9.26926 -9.11641 -8.84118 -6.41898 -0.05235 0.14932 0.83193 0.93949 1.28351 1.41308 1.50570 1.73257 1.85831 2.15271 2.23762 2.47100 2.65167 2.77529 3.40387 3.58604 3.60330 3.77455 3.96142 4.03860 4.11910 4.15863 4.25770 4.32775 4.40610 4.42580 4.49488 4.59936 4.64618 4.74963 4.79688 4.94759 4.97268 5.01774 5.02956 5.15843 5.19988 5.34014 5.40752 5.45387 5.52076 5.71392 5.90195 5.99261 6.06037 6.08990 6.32834 6.49241 6.67280 6.83991 6.94554 7.44745 8.23781 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016182 B = 0.002534 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.878685 B =11048.667707 C =12379.734871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.047 3.953 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.249 1.249 7 C -0.469 4.469 8 H 0.057 0.943 9 C 0.082 3.918 10 C -0.257 4.257 11 C -0.093 4.093 12 C -0.230 4.230 13 C -0.078 4.078 14 C -0.171 4.171 15 C -0.075 4.075 16 C 0.518 3.482 17 O -0.574 6.574 18 N -0.721 5.721 19 C 0.168 3.832 20 C -0.091 4.091 21 C -0.077 4.077 22 C -0.097 4.097 23 C 0.026 3.974 24 C 0.011 3.989 25 C -0.094 4.094 26 O -0.330 6.330 27 C 0.204 3.796 28 O -0.320 6.320 29 H 0.290 0.710 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.412 0.588 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.128 0.872 42 H 0.104 0.896 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 -18.784 9.558 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.166 4.166 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.173 1.173 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.079 3.921 10 C -0.277 4.277 11 C -0.111 4.111 12 C -0.249 4.249 13 C -0.096 4.096 14 C -0.172 4.172 15 C -0.114 4.114 16 C 0.306 3.694 17 O -0.452 6.452 18 N -0.375 5.375 19 C 0.045 3.955 20 C -0.092 4.092 21 C -0.095 4.095 22 C -0.115 4.115 23 C -0.018 4.018 24 C -0.033 4.033 25 C -0.113 4.113 26 O -0.247 6.247 27 C 0.094 3.906 28 O -0.237 6.237 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.249 0.751 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.185 0.815 40 H 0.182 0.818 41 H 0.146 0.854 42 H 0.122 0.878 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.536 -18.737 8.902 20.899 hybrid contribution -0.994 0.805 0.181 1.292 sum 1.543 -17.932 9.083 20.160 Atomic orbital electron populations 1.69745 1.09090 1.31034 1.38193 1.26776 0.95228 1.04052 0.90594 0.85527 0.79886 0.77008 0.78862 1.19512 1.20620 1.17278 1.19331 0.94122 0.95019 1.41421 0.92439 1.17744 0.92595 0.91765 0.89962 1.21142 0.96901 1.04933 1.04686 1.20974 0.93109 0.98354 0.98638 1.20888 0.99745 1.00159 1.04077 1.20912 0.94472 0.97598 0.96612 1.19565 0.93663 1.01051 1.02940 1.20354 1.01967 0.91839 0.97276 1.21118 0.77086 0.83518 0.87699 1.90672 1.58454 1.79867 1.16243 1.45955 1.61125 1.19618 1.10769 1.20028 0.98038 0.84825 0.92581 1.19446 0.92652 0.97755 0.99323 1.21158 1.00769 0.92211 0.95363 1.20399 0.91631 1.01684 0.97816 1.20154 0.95674 0.92886 0.93111 1.19891 0.85922 0.99004 0.98513 1.20077 0.96480 0.98985 0.95735 1.87360 1.32830 1.34173 1.70329 1.26122 0.81933 0.80050 1.02502 1.87332 1.19365 1.62778 1.54221 0.89982 0.89314 0.86198 0.85358 0.85277 0.88865 0.85822 0.75132 0.89590 0.92731 0.81484 0.81848 0.85446 0.87821 0.82243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.10 13.93 21.83 0.30 -47.79 16 2 C 0.05 2.59 5.41 85.26 0.46 3.05 16 3 Si 0.96 44.33 24.52 68.60 1.68 46.01 16 4 H -0.27 -12.10 6.71 99.48 0.67 -11.43 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.25 -11.53 6.85 99.48 0.68 -10.85 16 7 C -0.47 -26.53 8.56 23.46 0.20 -26.33 16 8 H 0.06 3.49 6.99 -2.91 -0.02 3.47 16 9 C 0.08 4.27 5.10 -21.29 -0.11 4.16 16 10 C -0.26 -12.90 7.17 22.73 0.16 -12.73 16 11 C -0.09 -4.00 10.02 22.22 0.22 -3.78 16 12 C -0.23 -9.05 10.05 22.46 0.23 -8.83 16 13 C -0.08 -3.10 9.66 22.22 0.21 -2.88 16 14 C -0.17 -7.65 4.43 -19.40 -0.09 -7.74 16 15 C -0.07 -2.74 5.19 29.10 0.15 -2.58 16 16 C 0.52 19.57 7.42 87.66 0.65 20.22 16 17 O -0.57 -27.53 16.03 -3.04 -0.05 -27.58 16 18 N -0.72 -20.02 5.55 -466.78 -2.59 -22.61 16 19 C 0.17 4.25 5.79 85.63 0.50 4.75 16 20 C -0.09 -1.85 5.25 -19.86 -0.10 -1.96 16 21 C -0.08 -1.17 9.69 22.27 0.22 -0.95 16 22 C -0.10 -1.50 10.06 22.34 0.22 -1.27 16 23 C 0.03 0.53 7.15 22.59 0.16 0.70 16 24 C 0.01 0.25 7.15 22.59 0.16 0.41 16 25 C -0.09 -2.18 9.71 22.34 0.22 -1.97 16 26 O -0.33 -7.48 11.40 -76.01 -0.87 -8.34 16 27 C 0.20 2.90 8.89 113.37 1.01 3.91 16 28 O -0.32 -6.09 11.40 -76.09 -0.87 -6.96 16 29 H 0.29 14.79 8.30 -92.71 -0.77 14.02 16 30 H 0.09 4.51 4.74 -2.91 -0.01 4.50 16 31 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 34 H 0.09 3.56 7.15 -2.39 -0.02 3.54 16 35 H 0.12 3.32 8.05 -2.38 -0.02 3.30 16 36 H 0.41 9.05 8.46 -92.71 -0.78 8.26 16 37 H 0.09 2.05 8.08 -2.39 -0.02 2.03 16 38 H 0.05 1.64 8.09 -2.38 -0.02 1.62 16 39 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 42 H 0.10 1.01 8.14 -2.38 -0.02 1.00 16 43 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.12 364.70 2.30 -72.82 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.21 Total: 28.29 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 4.48 Total: -33.83 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -2.29 Total: -70.41 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -1.78 Total: -42.88 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.68 Total: 46.01 kcal Total: -75.12 2.30 -72.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776725277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.097 kcal (2) G-P(sol) polarization free energy of solvation -75.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds