Wall clock time and date at job start Sat Apr 11 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48504 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47038 * 299.99854 * 3 2 1 6 6 H 1.48497 * 109.47031 * 59.99848 * 3 2 1 7 7 C 1.38816 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00166 * 163.07343 * 7 2 1 9 9 N 1.36939 * 119.99817 * 343.06988 * 7 2 1 10 10 C 1.46930 * 120.63122 * 331.84783 * 9 7 2 11 11 C 1.53188 * 108.77753 * 233.58765 * 10 9 7 12 12 C 1.53036 * 109.31364 * 305.36707 * 11 10 9 13 13 N 1.46498 * 109.46393 * 181.38449 * 12 11 10 14 14 C 1.34776 * 120.00713 * 154.97332 * 13 12 11 15 15 O 1.21588 * 119.99358 * 359.97438 * 14 13 12 16 16 N 1.34767 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.40107 * 120.00319 * 359.97438 * 16 14 13 18 18 C 1.38997 * 119.99862 * 179.97438 * 17 16 14 19 19 C 1.39078 * 119.69630 * 179.97438 * 18 17 16 20 20 C 1.38447 * 119.08367 * 179.70028 * 19 18 17 21 21 Cl 1.73597 * 120.76495 * 180.25723 * 20 19 18 22 22 C 1.39028 * 118.47871 * 0.28298 * 20 19 18 23 23 C 1.37975 * 119.31105 * 359.97438 * 22 20 19 24 24 N 1.31990 * 120.86965 * 0.02562 * 23 22 20 25 25 C 1.53045 * 109.52921 * 61.37205 * 12 11 10 26 26 C 1.46926 * 120.63107 * 151.82947 * 9 7 2 27 27 H 0.96994 * 120.00127 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.58083 * 113.80149 * 10 9 7 29 29 H 1.09001 * 109.70088 * 353.44824 * 10 9 7 30 30 H 1.08995 * 109.50051 * 185.41324 * 11 10 9 31 31 H 1.09007 * 109.52210 * 65.33431 * 11 10 9 32 32 H 1.08997 * 109.46262 * 301.35747 * 12 11 10 33 33 H 0.97010 * 119.99880 * 334.96978 * 13 12 11 34 34 H 0.97007 * 119.99839 * 179.97438 * 16 14 13 35 35 H 0.96997 * 119.99699 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.45816 * 359.97438 * 19 18 17 37 37 H 1.08004 * 120.35113 * 179.97438 * 22 20 19 38 38 H 1.07998 * 119.56425 * 179.97438 * 23 22 20 39 39 H 1.09001 * 109.49811 * 58.57519 * 25 12 11 40 40 H 1.09000 * 109.49944 * 178.67870 * 25 12 11 41 41 H 1.08991 * 109.58755 * 246.19920 * 26 9 7 42 42 H 1.08998 * 109.58619 * 6.48184 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3409 1.2661 11 6 0.4975 -3.3209 2.4118 12 6 0.8120 -4.7021 1.8327 13 7 1.0396 -5.6497 2.9265 14 6 0.8358 -6.9674 2.7301 15 8 0.4625 -7.3696 1.6451 16 7 1.0447 -7.8390 3.7366 17 7 1.4743 -7.3754 4.9870 18 6 1.6892 -8.2744 6.0251 19 6 2.1162 -7.8074 7.2636 20 6 2.3203 -8.7133 8.2905 21 17 2.8466 -8.1776 9.8556 22 6 2.0947 -10.0620 8.0394 23 6 1.6769 -10.4547 6.7844 24 7 1.4905 -9.5682 5.8245 25 6 2.0676 -4.6178 0.9617 26 6 1.8139 -3.6528 -0.2007 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6769 -2.6411 0.7346 29 1 0.0968 -1.3359 1.6677 30 1 -0.3831 -3.3862 3.0509 31 1 1.3470 -2.9699 2.9978 32 1 -0.0280 -5.0418 1.2269 33 1 1.3371 -5.3287 3.7923 34 1 0.8976 -8.7873 3.5952 35 1 1.6210 -6.4271 5.1284 36 1 2.2820 -6.7523 7.4234 37 1 2.2449 -10.7948 8.8184 38 1 1.5008 -11.5014 6.5847 39 1 2.9024 -4.2543 1.5610 40 1 2.3046 -5.6064 0.5685 41 1 1.0403 -4.0600 -0.8517 42 1 2.7332 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778661417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:11 Heat of formation + Delta-G solvation = 69.331612 kcal Electronic energy + Delta-G solvation = -26267.530273 eV Core-core repulsion = 22310.795753 eV Total energy + Delta-G solvation = -3956.734520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91564 -40.05456 -37.66400 -37.25311 -36.46631 -34.49439 -32.69735 -32.56178 -31.87759 -30.14323 -29.39415 -28.83484 -25.12613 -24.24838 -23.32605 -22.48578 -22.20518 -20.69483 -19.83550 -18.98509 -18.74551 -17.19770 -16.71829 -16.48705 -16.13214 -15.64190 -15.27744 -15.03159 -14.89426 -14.74497 -14.34586 -14.19720 -13.77931 -13.58593 -13.14470 -12.99444 -12.81980 -12.72709 -12.39888 -11.98756 -11.56361 -11.50046 -11.16946 -10.93791 -10.76343 -10.55829 -10.39037 -10.27735 -10.11775 -10.07052 -9.96630 -9.85288 -9.80716 -9.59285 -8.86702 -8.49934 -7.87771 -6.71696 -5.82597 -3.24830 0.58289 0.74688 1.31655 1.77662 2.88771 3.07989 3.31203 3.34640 3.42954 3.45050 3.81679 4.32509 4.45209 4.46916 4.50966 5.01807 5.02526 5.15669 5.28792 5.36288 5.44763 5.53182 5.54470 5.79528 5.83082 6.02626 6.15751 6.18517 6.26584 6.40601 6.51720 6.53372 6.72202 6.78465 6.88881 6.99576 7.02025 7.27300 7.48080 7.58584 7.77238 8.02612 8.41489 8.47689 9.17751 9.80811 10.37728 11.26428 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.002116 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.265994 B =13229.708280 C =14461.556050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.147 4.147 12 C 0.167 3.833 13 N -0.736 5.736 14 C 0.710 3.290 15 O -0.570 6.570 16 N -0.530 5.530 17 N -0.518 5.518 18 C 0.423 3.577 19 C -0.228 4.228 20 C 0.057 3.943 21 Cl -0.050 7.050 22 C -0.229 4.229 23 C 0.172 3.828 24 N -0.541 5.541 25 C -0.140 4.140 26 C 0.147 3.853 27 H 0.254 0.746 28 H 0.022 0.978 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.385 0.615 34 H 0.440 0.560 35 H 0.432 0.568 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.168 0.832 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.021 0.979 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.857 -19.073 19.620 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.063 3.937 13 N -0.391 5.391 14 C 0.409 3.591 15 O -0.444 6.444 16 N -0.287 5.287 17 N -0.250 5.250 18 C 0.186 3.814 19 C -0.255 4.255 20 C 0.022 3.978 21 Cl -0.021 7.021 22 C -0.253 4.253 23 C 0.014 3.986 24 N -0.260 5.260 25 C -0.181 4.181 26 C 0.020 3.980 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.218 0.782 34 H 0.286 0.714 35 H 0.276 0.724 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.185 0.815 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.188 -19.276 17.839 26.457 hybrid contribution 0.913 1.346 1.548 2.245 sum 4.101 -17.930 19.387 26.724 Atomic orbital electron populations 1.70030 1.05248 1.25456 1.54010 1.25064 0.95303 0.98457 1.00886 0.86228 0.79363 0.83927 0.77287 1.20265 1.21699 1.21579 1.19229 0.92611 0.84697 1.41570 0.91581 1.44108 1.35797 1.01709 1.49941 1.20741 0.88983 0.97854 0.87634 1.22562 1.00522 0.94617 1.00980 1.21015 0.98656 0.87455 0.86543 1.45617 1.72488 1.04946 1.16088 1.15819 0.78986 0.81456 0.82843 1.91035 1.54191 1.77077 1.22075 1.44621 1.73422 1.10533 1.00082 1.43139 1.73092 1.07339 1.01391 1.17930 0.90617 0.87771 0.85118 1.20975 1.11277 1.01512 0.91701 1.20873 0.96120 0.93742 0.87081 1.98412 1.88286 1.90391 1.25001 1.21797 1.08771 0.94589 1.00101 1.22442 0.90511 0.98691 0.86961 1.67086 1.22768 1.00510 1.35648 1.22409 0.97077 0.99683 0.98894 1.20880 0.98008 0.86473 0.92617 0.93625 0.95991 0.88952 0.92685 0.92189 0.89703 0.78168 0.71385 0.72362 0.83606 0.83816 0.81451 0.92377 0.92571 0.96062 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.73 11.19 55.49 0.62 -25.11 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.52 2.99 -172.32 -0.52 -15.03 16 10 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 11 C -0.15 -2.56 5.55 -26.62 -0.15 -2.71 16 12 C 0.17 2.80 2.42 -67.89 -0.16 2.63 16 13 N -0.74 -9.82 5.04 -58.64 -0.30 -10.11 16 14 C 0.71 10.33 8.64 -86.93 -0.75 9.58 16 15 O -0.57 -10.68 16.84 5.29 0.09 -10.59 16 16 N -0.53 -6.05 6.29 27.63 0.17 -5.87 16 17 N -0.52 -4.54 6.42 31.12 0.20 -4.34 16 18 C 0.42 3.68 7.59 -155.02 -1.18 2.51 16 19 C -0.23 -1.66 9.76 -39.19 -0.38 -2.04 16 20 C 0.06 0.40 6.37 -39.21 -0.25 0.15 16 21 Cl -0.05 -0.34 29.02 -51.86 -1.50 -1.84 16 22 C -0.23 -1.39 9.93 -39.38 -0.39 -1.78 16 23 C 0.17 1.13 11.17 -17.58 -0.20 0.93 16 24 N -0.54 -4.89 9.37 -12.46 -0.12 -5.01 16 25 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 26 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.09 2.35 6.07 -51.93 -0.31 2.04 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 32 H 0.08 1.62 7.57 -51.93 -0.39 1.22 16 33 H 0.38 3.94 6.52 -40.82 -0.27 3.68 16 34 H 0.44 5.05 8.05 -182.59 -1.47 3.58 16 35 H 0.43 2.91 6.69 -182.59 -1.22 1.69 16 36 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 38 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -32.18 363.52 -12.22 -44.39 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.43 Total: 5.06 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -3.88 Total: 6.73 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: 0.07 Total: -65.48 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.18 -12.22 -44.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778661417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.726 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds