Wall clock time and date at job start Sat Apr 11 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48504 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47038 * 299.99854 * 3 2 1 6 6 H 1.48497 * 109.47031 * 59.99848 * 3 2 1 7 7 C 1.38816 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00166 * 163.07343 * 7 2 1 9 9 N 1.36939 * 119.99817 * 343.06988 * 7 2 1 10 10 C 1.46930 * 120.63122 * 331.84783 * 9 7 2 11 11 C 1.53188 * 108.77753 * 233.58765 * 10 9 7 12 12 C 1.53036 * 109.31364 * 305.36707 * 11 10 9 13 13 N 1.46498 * 109.46393 * 181.38449 * 12 11 10 14 14 C 1.34776 * 120.00713 * 154.97332 * 13 12 11 15 15 O 1.21588 * 119.99358 * 359.97438 * 14 13 12 16 16 N 1.34767 * 120.00270 * 180.02562 * 14 13 12 17 17 N 1.40107 * 120.00319 * 359.97438 * 16 14 13 18 18 C 1.38997 * 119.99862 * 179.97438 * 17 16 14 19 19 C 1.39078 * 119.69630 * 179.97438 * 18 17 16 20 20 C 1.38447 * 119.08367 * 179.70028 * 19 18 17 21 21 Cl 1.73597 * 120.76495 * 180.25723 * 20 19 18 22 22 C 1.39028 * 118.47871 * 0.28298 * 20 19 18 23 23 C 1.37975 * 119.31105 * 359.97438 * 22 20 19 24 24 N 1.31990 * 120.86965 * 0.02562 * 23 22 20 25 25 C 1.53045 * 109.52921 * 61.37205 * 12 11 10 26 26 C 1.46926 * 120.63107 * 151.82947 * 9 7 2 27 27 H 0.96994 * 120.00127 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.58083 * 113.80149 * 10 9 7 29 29 H 1.09001 * 109.70088 * 353.44824 * 10 9 7 30 30 H 1.08995 * 109.50051 * 185.41324 * 11 10 9 31 31 H 1.09007 * 109.52210 * 65.33431 * 11 10 9 32 32 H 1.08997 * 109.46262 * 301.35747 * 12 11 10 33 33 H 0.97010 * 119.99880 * 334.96978 * 13 12 11 34 34 H 0.97007 * 119.99839 * 179.97438 * 16 14 13 35 35 H 0.96997 * 119.99699 * 0.02562 * 17 16 14 36 36 H 1.08000 * 120.45816 * 359.97438 * 19 18 17 37 37 H 1.08004 * 120.35113 * 179.97438 * 22 20 19 38 38 H 1.07998 * 119.56425 * 179.97438 * 23 22 20 39 39 H 1.09001 * 109.49811 * 58.57519 * 25 12 11 40 40 H 1.09000 * 109.49944 * 178.67870 * 25 12 11 41 41 H 1.08991 * 109.58755 * 246.19920 * 26 9 7 42 42 H 1.08998 * 109.58619 * 6.48184 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3409 1.2661 11 6 0.4975 -3.3209 2.4118 12 6 0.8120 -4.7021 1.8327 13 7 1.0396 -5.6497 2.9265 14 6 0.8358 -6.9674 2.7301 15 8 0.4625 -7.3696 1.6451 16 7 1.0447 -7.8390 3.7366 17 7 1.4743 -7.3754 4.9870 18 6 1.6892 -8.2744 6.0251 19 6 2.1162 -7.8074 7.2636 20 6 2.3203 -8.7133 8.2905 21 17 2.8466 -8.1776 9.8556 22 6 2.0947 -10.0620 8.0394 23 6 1.6769 -10.4547 6.7844 24 7 1.4905 -9.5682 5.8245 25 6 2.0676 -4.6178 0.9617 26 6 1.8139 -3.6528 -0.2007 27 1 -0.4850 0.8400 -0.0004 28 1 -0.6769 -2.6411 0.7346 29 1 0.0968 -1.3359 1.6677 30 1 -0.3831 -3.3862 3.0509 31 1 1.3470 -2.9699 2.9978 32 1 -0.0280 -5.0418 1.2269 33 1 1.3371 -5.3287 3.7923 34 1 0.8976 -8.7873 3.5952 35 1 1.6210 -6.4271 5.1284 36 1 2.2820 -6.7523 7.4234 37 1 2.2449 -10.7948 8.8184 38 1 1.5008 -11.5014 6.5847 39 1 2.9024 -4.2543 1.5610 40 1 2.3046 -5.6064 0.5685 41 1 1.0403 -4.0600 -0.8517 42 1 2.7332 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778661417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:11 Heat of formation + Delta-G solvation = 48.578316 kcal Electronic energy + Delta-G solvation = -26268.430204 eV Core-core repulsion = 22310.795753 eV Total energy + Delta-G solvation = -3957.634451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69238 -41.01557 -39.14700 -37.89841 -37.30027 -36.05591 -33.97635 -33.23835 -33.04529 -31.74135 -31.02827 -29.57724 -26.94212 -24.88098 -24.08823 -23.91552 -23.78179 -21.91682 -21.24145 -19.99491 -19.70684 -18.69529 -17.76247 -17.18314 -16.97633 -16.81867 -16.64735 -16.25984 -15.87149 -15.61462 -15.49527 -15.35416 -15.22514 -14.77394 -14.69286 -14.41634 -14.07266 -13.62770 -13.28958 -13.21597 -13.02218 -12.72530 -12.62398 -12.53112 -12.25505 -12.06902 -11.99823 -11.87073 -11.67863 -11.53491 -11.29301 -10.69444 -10.63275 -10.55720 -10.50112 -10.09128 -8.70491 -8.59969 -7.87583 -5.33044 0.05756 0.20235 0.66762 1.10815 1.47894 1.50240 1.60657 1.86457 1.96067 2.52322 2.74268 3.13048 3.28914 3.66350 3.79462 3.87490 3.92550 4.01434 4.04497 4.32504 4.38288 4.46814 4.54614 4.65256 4.67394 4.77947 4.85232 4.99331 5.05696 5.06135 5.15451 5.17697 5.30302 5.44807 5.47983 5.53937 5.65655 5.70992 5.91532 6.20992 6.39707 6.80473 7.15142 7.16757 7.39011 7.84511 8.37221 9.19705 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016871 B = 0.002116 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.265994 B =13229.708280 C =14461.556050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.128 4.128 12 C 0.180 3.820 13 N -0.722 5.722 14 C 0.711 3.289 15 O -0.616 6.616 16 N -0.519 5.519 17 N -0.516 5.516 18 C 0.406 3.594 19 C -0.225 4.225 20 C 0.045 3.955 21 Cl -0.047 7.047 22 C -0.220 4.220 23 C 0.164 3.836 24 N -0.564 5.564 25 C -0.125 4.125 26 C 0.144 3.856 27 H 0.251 0.749 28 H -0.005 1.005 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.404 0.596 34 H 0.441 0.559 35 H 0.441 0.559 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.195 0.805 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.008 0.992 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 -20.028 22.021 30.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.214 1.214 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.168 4.168 12 C 0.075 3.925 13 N -0.378 5.378 14 C 0.410 3.590 15 O -0.493 6.493 16 N -0.273 5.273 17 N -0.251 5.251 18 C 0.171 3.829 19 C -0.252 4.252 20 C 0.010 3.990 21 Cl -0.018 7.018 22 C -0.243 4.243 23 C 0.007 3.993 24 N -0.283 5.283 25 C -0.165 4.165 26 C 0.018 3.982 27 H 0.060 0.940 28 H 0.013 0.987 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.241 0.759 34 H 0.287 0.713 35 H 0.287 0.713 36 H 0.180 0.820 37 H 0.183 0.817 38 H 0.212 0.788 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.026 0.974 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.573 -20.275 20.326 29.071 hybrid contribution 0.502 1.507 0.873 1.812 sum 5.075 -18.768 21.199 28.765 Atomic orbital electron populations 1.70185 1.06661 1.25875 1.55433 1.25812 0.96042 1.01503 1.01189 0.85203 0.78616 0.79810 0.76761 1.19103 1.22251 1.21389 1.19540 0.92852 0.85776 1.40932 0.91495 1.44364 1.35943 1.02188 1.50747 1.20570 0.87730 0.97779 0.88752 1.22271 1.02153 0.93346 0.99014 1.20590 0.97273 0.87631 0.87041 1.45131 1.72402 1.04166 1.16082 1.15781 0.78787 0.81689 0.82745 1.91008 1.56153 1.77913 1.24255 1.44274 1.72232 1.10011 1.00765 1.43107 1.73898 1.07877 1.00189 1.18078 0.91577 0.87876 0.85409 1.21119 1.10500 1.02497 0.91080 1.21048 0.96461 0.94267 0.87232 1.98415 1.88261 1.90425 1.24734 1.22096 1.07066 0.94703 1.00430 1.22939 0.90044 0.99591 0.86721 1.67088 1.23304 1.01022 1.36894 1.22202 0.97822 0.98688 0.97805 1.20967 0.97425 0.85936 0.93883 0.94023 0.98694 0.91736 0.90329 0.90807 0.92100 0.75928 0.71267 0.71327 0.82017 0.81668 0.78822 0.91373 0.92200 0.97418 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.56 11.19 21.65 0.24 -54.32 16 2 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 3 Si 0.97 44.01 29.59 68.60 2.03 46.04 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.26 -14.11 9.58 84.03 0.81 -13.31 16 8 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 9 N -0.61 -30.17 2.99 -699.10 -2.09 -32.27 16 10 C 0.18 8.28 5.30 86.36 0.46 8.74 16 11 C -0.13 -4.31 5.55 30.67 0.17 -4.14 16 12 C 0.18 5.86 2.42 45.02 0.11 5.97 16 13 N -0.72 -17.92 5.04 -457.70 -2.31 -20.23 16 14 C 0.71 19.92 8.64 179.06 1.55 21.47 16 15 O -0.62 -23.03 16.84 -3.99 -0.07 -23.09 16 16 N -0.52 -11.14 6.29 -184.76 -1.16 -12.30 16 17 N -0.52 -8.03 6.42 -55.46 -0.36 -8.38 16 18 C 0.41 6.30 7.59 133.04 1.01 7.31 16 19 C -0.23 -2.78 9.76 22.52 0.22 -2.56 16 20 C 0.04 0.53 6.37 22.51 0.14 0.68 16 21 Cl -0.05 -0.54 29.02 -2.72 -0.08 -0.62 16 22 C -0.22 -2.10 9.93 22.40 0.22 -1.88 16 23 C 0.16 1.77 11.17 84.61 0.95 2.72 16 24 N -0.56 -9.19 9.37 -193.32 -1.81 -11.00 16 25 C -0.12 -4.34 5.65 30.67 0.17 -4.16 16 26 C 0.14 6.15 6.52 86.36 0.56 6.71 16 27 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 28 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.06 2.33 7.57 -2.39 -0.02 2.31 16 33 H 0.40 7.13 6.52 -92.70 -0.60 6.52 16 34 H 0.44 9.69 8.05 -213.31 -1.72 7.97 16 35 H 0.44 4.84 6.69 -213.32 -1.43 3.41 16 36 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 38 H 0.20 0.86 8.06 -2.91 -0.02 0.83 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 Total: -1.00 -70.69 363.52 -1.48 -72.17 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -2.66 Total: 18.80 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 6.78 Total: 25.21 kcal Atomic # 7 Polarization: -131.01 SS G_CDS: -7.49 Total: -138.50 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.07 Total: -23.09 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -70.69 -1.48 -72.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778661417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.749 kcal (2) G-P(sol) polarization free energy of solvation -70.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds