Wall clock time and date at job start Sat Apr 11 2020 05:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86795 * 119.99723 * 2 1 4 4 H 1.48504 * 109.47022 * 270.00006 * 3 2 1 5 5 H 1.48504 * 109.47067 * 29.99533 * 3 2 1 6 6 H 1.48496 * 109.47360 * 149.99603 * 3 2 1 7 7 C 1.39939 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00253 * 197.85779 * 7 2 1 9 9 C 1.41400 * 120.00197 * 17.85811 * 7 2 1 10 10 C 1.40727 * 120.24162 * 24.38518 * 9 7 2 11 11 C 1.37602 * 119.74064 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25361 * 359.97438 * 11 10 9 13 13 C 1.38614 * 120.49686 * 0.02562 * 12 11 10 14 14 S 1.76202 * 119.87453 * 179.97438 * 13 12 11 15 15 O 1.42102 * 106.40419 * 203.53932 * 14 13 12 16 16 O 1.42096 * 106.40354 * 336.46372 * 14 13 12 17 17 N 1.65599 * 107.21678 * 90.00086 * 14 13 12 18 18 C 1.43434 * 120.53500 * 269.71875 * 17 14 13 19 19 C 1.54401 * 116.39233 * 271.72898 * 18 17 14 20 20 C 1.54851 * 110.07110 * 318.65427 * 19 18 17 21 21 C 1.50126 * 110.81535 * 321.07309 * 20 19 18 22 22 H 1.08994 * 110.24912 * 338.71055 * 21 20 19 23 23 C 1.52995 * 110.24701 * 216.65414 * 21 20 19 24 24 O 1.42900 * 109.47442 * 69.02071 * 23 21 20 25 25 C 1.52526 * 105.41315 * 97.68285 * 21 20 19 26 26 C 1.46236 * 114.27762 * 270.59252 * 25 21 20 27 27 C 1.37636 * 120.25048 * 0.25145 * 13 12 11 28 28 H 0.96991 * 120.00737 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13256 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.87422 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.75247 * 180.02562 * 12 11 10 32 32 H 1.08992 * 108.16256 * 33.31022 * 18 17 14 33 33 H 1.09007 * 108.15427 * 149.87503 * 18 17 14 34 34 H 1.09001 * 109.44539 * 198.44557 * 19 18 17 35 35 H 1.09000 * 109.23967 * 78.73653 * 19 18 17 36 36 H 1.08999 * 109.20693 * 200.72855 * 20 19 18 37 37 H 1.09004 * 109.16881 * 81.38923 * 20 19 18 38 38 H 1.09007 * 109.46863 * 189.01868 * 23 21 20 39 39 H 1.08997 * 109.47673 * 309.01855 * 23 21 20 40 40 H 0.96693 * 114.00266 * 179.97438 * 24 23 21 41 41 H 1.08999 * 108.52155 * 149.35058 * 25 21 20 42 42 H 1.09003 * 108.52507 * 31.83296 * 25 21 20 43 43 H 1.09005 * 109.84651 * 298.90110 * 26 25 21 44 44 H 1.08995 * 109.90341 * 177.94831 * 26 25 21 45 45 H 1.08004 * 120.13210 * 179.70153 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4395 2.6527 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2344 0.2874 9 6 1.3521 -2.4072 -0.3744 10 6 0.2208 -2.3626 -1.2102 11 6 -0.4098 -3.5321 -1.5683 12 6 0.0657 -4.7510 -1.1093 13 6 1.1792 -4.8067 -0.2856 14 16 1.7690 -6.3645 0.2887 15 8 2.4991 -6.1030 1.4794 16 8 0.6643 -7.2567 0.2344 17 7 2.8676 -6.9127 -0.8226 18 6 2.4450 -7.7291 -1.9236 19 6 2.4087 -9.2524 -1.6743 20 6 3.6535 -9.6878 -0.8626 21 6 4.8731 -8.9368 -1.3123 22 1 4.7252 -8.5450 -2.3186 23 6 6.1011 -9.8485 -1.2722 24 8 5.9868 -10.8466 -2.2885 25 6 5.0333 -7.7913 -0.3181 26 6 4.3233 -6.5683 -0.6903 27 6 1.8224 -3.6493 0.0899 28 1 -0.4851 0.8399 -0.0004 29 1 -0.1515 -1.4143 -1.5686 30 1 -1.2785 -3.5004 -2.2093 31 1 -0.4352 -5.6639 -1.3957 32 1 1.4435 -7.4136 -2.2157 33 1 3.1135 -7.5392 -2.7634 34 1 2.3992 -9.7764 -2.6300 35 1 1.5071 -9.5035 -1.1155 36 1 3.8178 -10.7561 -1.0037 37 1 3.4791 -9.4884 0.1947 38 1 6.9995 -9.2557 -1.4445 39 1 6.1648 -10.3295 -0.2962 40 1 6.7325 -11.4613 -2.3217 41 1 6.0945 -7.5606 -0.2237 42 1 4.6668 -8.1223 0.6537 43 1 4.7031 -6.1948 -1.6413 44 1 4.4558 -5.8122 0.0835 45 1 2.6869 -3.6946 0.7357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815103765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:55 Heat of formation + Delta-G solvation = -111.498424 kcal Electronic energy + Delta-G solvation = -28197.807177 eV Core-core repulsion = 24306.522577 eV Total energy + Delta-G solvation = -3891.284600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.40990 -37.63086 -36.79785 -36.70072 -35.24990 -33.84779 -33.59215 -32.58550 -30.07620 -29.78094 -27.78428 -25.69470 -25.47441 -23.46243 -21.89026 -21.55786 -20.98357 -19.89730 -18.57216 -17.75074 -17.37901 -17.09498 -16.18627 -15.93938 -15.30669 -15.10223 -15.05166 -14.68634 -14.55943 -14.35164 -13.82158 -13.45693 -13.37792 -13.20169 -12.94896 -12.57851 -12.34528 -12.16226 -11.92024 -11.80436 -11.55665 -11.54425 -11.40406 -11.34916 -11.17330 -11.05176 -10.85616 -10.79375 -10.67643 -10.60036 -10.49066 -10.28778 -10.07840 -9.76250 -9.61214 -9.35646 -8.79354 -8.02293 -7.70320 -6.92263 -4.53797 0.99685 2.20893 2.62990 2.99524 3.03268 3.06005 3.45834 3.82476 3.93190 4.28016 4.40090 4.65693 4.70578 4.76460 4.91872 4.99748 5.15628 5.21037 5.27606 5.32115 5.33909 5.41750 5.54846 5.72385 5.79221 5.84360 5.86012 6.02067 6.06849 6.13505 6.17451 6.19584 6.26427 6.34590 6.41671 6.64903 6.74649 6.78939 6.96592 7.05781 7.22566 7.38265 7.38815 7.72912 7.80192 7.94293 8.39882 8.66980 8.71798 10.03415 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.003138 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.970689 B = 8920.747294 C = 9640.282446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.147 4.147 13 C -0.631 4.631 14 S 2.685 3.315 15 O -0.971 6.971 16 O -0.971 6.971 17 N -0.994 5.994 18 C 0.127 3.873 19 C -0.140 4.140 20 C -0.112 4.112 21 C -0.086 4.086 22 H 0.088 0.912 23 C 0.083 3.917 24 O -0.572 6.572 25 C -0.135 4.135 26 C 0.130 3.870 27 C -0.127 4.127 28 H 0.284 0.716 29 H 0.125 0.875 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.376 0.624 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.054 -13.426 -4.794 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.168 4.168 13 C -0.723 4.723 14 S 2.782 3.218 15 O -0.961 6.961 16 O -0.961 6.961 17 N -0.831 5.831 18 C 0.000 4.000 19 C -0.179 4.179 20 C -0.149 4.149 21 C -0.104 4.104 22 H 0.106 0.894 23 C 0.005 3.995 24 O -0.377 6.377 25 C -0.174 4.174 26 C 0.006 3.994 27 C -0.149 4.149 28 H 0.095 0.905 29 H 0.143 0.857 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.223 0.777 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.115 0.885 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.055 -13.394 -4.106 16.681 hybrid contribution 0.673 1.164 -0.280 1.373 sum 9.728 -12.230 -4.387 16.231 Atomic orbital electron populations 1.69782 1.07676 1.29647 1.34792 1.25942 0.94780 1.01572 0.92070 0.86232 0.80515 0.80187 0.79386 1.19182 1.20205 1.18429 1.19606 0.98393 0.90992 1.40059 0.89933 1.17683 0.91843 0.92032 0.89625 1.21651 0.97563 0.97119 0.97440 1.20819 0.99336 0.93182 1.00747 1.20084 0.97233 0.97399 1.02082 1.29838 1.09030 1.18073 1.15361 1.01886 0.72524 0.74359 0.73023 1.93509 1.72645 1.86390 1.43592 1.93501 1.52079 1.64100 1.86434 1.57752 1.18537 1.62838 1.43928 1.20565 1.00510 0.90330 0.88604 1.22634 0.98567 0.95795 1.00940 1.21550 0.93859 0.99844 0.99683 1.20572 0.94174 0.94964 1.00707 0.89407 1.22256 0.97397 0.89626 0.90190 1.86488 1.48782 1.45556 1.56910 1.20860 1.01005 0.95815 0.99719 1.20760 0.78622 0.96955 1.03043 1.20729 1.01200 0.91732 1.01208 0.90544 0.85730 0.88384 0.87683 0.91168 0.91122 0.90799 0.90947 0.91835 0.92275 0.93676 0.93708 0.77724 0.91170 0.90962 0.90485 0.88459 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.86 10.95 55.55 0.61 -19.25 16 2 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 3 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.46 -11.78 9.05 -37.74 -0.34 -12.12 16 8 H 0.08 2.01 7.91 -52.48 -0.41 1.59 16 9 C 0.09 2.37 5.58 -106.82 -0.60 1.77 16 10 C -0.12 -2.95 8.70 -38.87 -0.34 -3.29 16 11 C -0.12 -2.75 10.02 -39.66 -0.40 -3.15 16 12 C -0.15 -3.24 9.53 -39.29 -0.37 -3.61 16 13 C -0.63 -13.98 5.97 -39.66 -0.24 -14.21 16 14 S 2.69 51.64 5.64 -107.50 -0.61 51.03 16 15 O -0.97 -20.50 16.07 -57.17 -0.92 -21.42 16 16 O -0.97 -20.14 16.38 -57.17 -0.94 -21.07 16 17 N -0.99 -14.75 2.89 -116.41 -0.34 -15.09 16 18 C 0.13 1.66 4.70 -4.93 -0.02 1.64 16 19 C -0.14 -1.69 6.40 -25.02 -0.16 -1.85 16 20 C -0.11 -1.28 5.19 -27.18 -0.14 -1.42 16 21 C -0.09 -0.87 2.18 -92.29 -0.20 -1.07 16 22 H 0.09 0.93 6.28 -51.93 -0.33 0.60 16 23 C 0.08 0.69 6.19 37.15 0.23 0.92 16 24 O -0.57 -5.04 13.20 -35.23 -0.47 -5.51 16 25 C -0.14 -1.43 4.75 -30.19 -0.14 -1.57 16 26 C 0.13 1.61 5.94 -5.20 -0.03 1.58 16 27 C -0.13 -3.06 9.26 -38.87 -0.36 -3.42 16 28 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 29 H 0.12 3.16 6.15 -52.49 -0.32 2.84 16 30 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 31 H 0.11 2.10 7.60 -52.49 -0.40 1.70 16 32 H 0.07 0.95 7.80 -51.93 -0.41 0.55 16 33 H 0.07 0.78 6.89 -51.92 -0.36 0.43 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.70 7.38 -51.93 -0.38 0.32 16 37 H 0.06 0.74 6.83 -51.93 -0.35 0.38 16 38 H 0.04 0.32 8.01 -51.92 -0.42 -0.10 16 39 H 0.04 0.35 8.13 -51.93 -0.42 -0.08 16 40 H 0.38 1.59 9.12 45.56 0.42 2.01 16 41 H 0.07 0.59 7.72 -51.93 -0.40 0.19 16 42 H 0.07 0.85 6.93 -51.93 -0.36 0.49 16 43 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 44 H 0.10 1.27 7.30 -51.93 -0.38 0.89 16 45 H 0.11 2.52 7.60 -52.48 -0.40 2.12 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -31.41 367.05 -11.11 -42.52 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.75 Total: 8.41 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: -3.20 Total: -38.10 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.27 Total: -34.34 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -2.32 Total: -48.00 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 51.64 SS G_CDS: -0.61 Total: 51.03 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.41 -11.11 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815103765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.978 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds