Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86794 * 119.99811 * 2 1 4 4 H 1.48499 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47206 * 299.99948 * 3 2 1 6 6 H 1.48504 * 109.47486 * 59.99786 * 3 2 1 7 7 C 1.39943 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00108 * 162.27817 * 7 2 1 9 9 C 1.41396 * 120.00316 * 342.27932 * 7 2 1 10 10 C 1.40729 * 120.24029 * 335.23932 * 9 7 2 11 11 C 1.37604 * 119.74764 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24041 * 359.97438 * 11 10 9 13 13 C 1.38613 * 120.50418 * 0.02562 * 12 11 10 14 14 S 1.76202 * 119.87279 * 179.97438 * 13 12 11 15 15 O 1.42098 * 106.40751 * 336.46224 * 14 13 12 16 16 O 1.42097 * 106.40018 * 203.53687 * 14 13 12 17 17 N 1.65607 * 107.21454 * 90.00187 * 14 13 12 18 18 C 1.44583 * 118.64283 * 89.99876 * 17 14 13 19 19 C 1.54858 * 109.59641 * 270.70562 * 18 17 14 20 20 C 1.47104 * 110.32374 * 288.72904 * 19 18 17 21 21 C 1.52572 * 114.20332 * 62.88429 * 20 19 18 22 22 H 1.09002 * 109.48748 * 34.87434 * 21 20 19 23 23 C 1.52998 * 109.48783 * 154.94529 * 21 20 19 24 24 O 1.42900 * 109.47225 * 295.00034 * 23 21 20 25 25 C 1.51039 * 109.27576 * 274.78246 * 21 20 19 26 26 C 1.47601 * 118.64501 * 269.97599 * 17 14 13 27 27 C 1.37628 * 120.24713 * 0.25157 * 13 12 11 28 28 H 0.97003 * 120.00369 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.13317 * 0.02562 * 10 9 7 30 30 H 1.07992 * 119.88056 * 180.02562 * 11 10 9 31 31 H 1.08007 * 119.74232 * 179.97438 * 12 11 10 32 32 H 1.08997 * 109.44850 * 150.66548 * 18 17 14 33 33 H 1.09002 * 109.42818 * 30.73092 * 18 17 14 34 34 H 1.09004 * 109.32603 * 168.47546 * 19 18 17 35 35 H 1.08992 * 109.33470 * 48.99134 * 19 18 17 36 36 H 1.08997 * 108.51136 * 184.05880 * 20 19 18 37 37 H 1.08998 * 108.51077 * 301.71387 * 20 19 18 38 38 H 1.09001 * 109.47307 * 54.99914 * 23 21 20 39 39 H 1.09003 * 109.47113 * 174.99970 * 23 21 20 40 40 H 0.96694 * 114.00322 * 180.02562 * 24 23 21 41 41 H 1.09002 * 109.44344 * 331.90489 * 25 21 20 42 42 H 1.09001 * 109.30891 * 212.14633 * 25 21 20 43 43 H 1.08999 * 108.94865 * 258.57710 * 26 17 14 44 44 H 1.09005 * 108.94401 * 17.29043 * 26 17 14 45 45 H 1.08002 * 120.12679 * 179.70503 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0495 -1.2343 -0.2841 9 6 1.3514 -2.4073 0.3738 10 6 0.2230 -2.3636 1.2137 11 6 -0.4079 -3.5331 1.5710 12 6 0.0640 -4.7513 1.1062 13 6 1.1745 -4.8062 0.2784 14 16 1.7604 -6.3633 -0.3020 15 8 1.3010 -7.3364 0.6261 16 8 3.1329 -6.1816 -0.6221 17 7 0.9845 -6.6772 -1.7310 18 6 1.5898 -6.2224 -2.9627 19 6 1.1014 -4.7882 -3.2828 20 6 -0.3103 -4.8094 -3.6958 21 6 -1.2701 -5.3032 -2.6174 22 1 -0.9153 -4.9795 -1.6389 23 6 -2.6642 -4.7265 -2.8720 24 8 -2.6266 -3.3059 -2.7226 25 6 -1.3349 -6.8116 -2.6604 26 6 -0.2962 -7.4102 -1.6947 27 6 1.8246 -3.6495 -0.0871 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1464 -1.4159 1.5765 30 1 -1.2742 -3.5021 2.2150 31 1 -0.4371 -5.6644 1.3920 32 1 1.3069 -6.8919 -3.7750 33 1 2.6745 -6.2209 -2.8547 34 1 1.7066 -4.3723 -4.0884 35 1 1.2084 -4.1641 -2.3956 36 1 -0.6022 -3.7992 -3.9827 37 1 -0.4062 -5.4569 -4.5673 38 1 -2.9818 -4.9771 -3.8842 39 1 -3.3685 -5.1488 -2.1552 40 1 -3.4782 -2.8722 -2.8696 41 1 -1.1264 -7.1550 -3.6737 42 1 -2.3323 -7.1380 -2.3661 43 1 -0.1167 -8.4500 -1.9680 44 1 -0.6955 -7.3749 -0.6810 45 1 2.6925 -3.6950 -0.7283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815103766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -114.516947 kcal Electronic energy + Delta-G solvation = -29565.031836 eV Core-core repulsion = 25673.616343 eV Total energy + Delta-G solvation = -3891.415493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.04562 -37.56671 -36.74409 -36.40257 -35.27146 -33.78659 -33.43388 -32.54450 -30.01387 -29.73542 -27.42204 -25.65350 -25.40814 -23.19695 -21.88059 -21.04820 -20.80200 -19.87614 -18.44557 -17.88265 -17.14607 -16.96949 -15.99691 -15.87127 -15.26129 -15.00461 -14.88795 -14.60140 -14.51037 -13.98394 -13.49600 -13.41647 -13.31599 -12.93474 -12.59548 -12.48823 -12.44510 -11.95700 -11.86455 -11.69693 -11.58614 -11.40899 -11.36542 -11.32663 -11.08644 -10.93370 -10.85886 -10.61100 -10.56924 -10.32932 -10.26977 -10.15093 -9.71165 -9.68166 -9.52440 -9.29648 -8.66443 -7.93275 -7.62414 -6.85956 -4.46729 1.04468 2.26181 2.68429 3.03514 3.07876 3.10666 3.49322 3.87419 4.30293 4.37556 4.48808 4.75217 4.86605 4.99123 5.06377 5.21971 5.29316 5.36304 5.46082 5.53342 5.56968 5.62250 5.70692 5.74811 5.87508 5.94857 6.02369 6.09845 6.21702 6.30131 6.36538 6.37093 6.59897 6.64880 6.70419 6.77771 6.82421 6.88682 7.04408 7.11639 7.28605 7.44861 7.79092 7.87139 7.88484 8.00713 8.46715 8.73584 8.78615 10.08906 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.005250 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.982665 B = 5332.096064 C = 6278.176321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.096 3.904 10 C -0.114 4.114 11 C -0.119 4.119 12 C -0.147 4.147 13 C -0.629 4.629 14 S 2.679 3.321 15 O -0.976 6.976 16 O -0.971 6.971 17 N -0.991 5.991 18 C 0.118 3.882 19 C -0.153 4.153 20 C -0.100 4.100 21 C -0.091 4.091 22 H 0.094 0.906 23 C 0.083 3.917 24 O -0.558 6.558 25 C -0.122 4.122 26 C 0.127 3.873 27 C -0.123 4.123 28 H 0.281 0.719 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.037 0.963 39 H 0.040 0.960 40 H 0.372 0.628 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 -8.158 -7.588 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.489 4.489 8 H 0.100 0.900 9 C 0.092 3.908 10 C -0.134 4.134 11 C -0.138 4.138 12 C -0.168 4.168 13 C -0.721 4.721 14 S 2.777 3.223 15 O -0.967 6.967 16 O -0.961 6.961 17 N -0.827 5.827 18 C -0.008 4.008 19 C -0.192 4.192 20 C -0.137 4.137 21 C -0.109 4.109 22 H 0.113 0.887 23 C 0.006 3.994 24 O -0.362 6.362 25 C -0.161 4.161 26 C 0.001 3.999 27 C -0.145 4.145 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.218 0.782 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.742 -8.737 -7.138 12.238 hybrid contribution -0.935 1.667 -0.220 1.924 sum -5.677 -7.070 -7.358 11.677 Atomic orbital electron populations 1.69811 1.07530 1.29309 1.34668 1.25905 0.94750 1.01387 0.92199 0.86262 0.81124 0.80825 0.78594 1.18262 1.19921 1.19683 1.19619 0.98245 0.90988 1.40094 0.90026 1.17643 0.91652 0.91931 0.89553 1.21587 0.97588 0.96988 0.97260 1.20759 0.99241 0.93187 1.00636 1.20008 0.97233 0.97105 1.02475 1.29752 1.09665 1.18141 1.14551 1.02008 0.73333 0.74748 0.72251 1.93496 1.82297 1.59634 1.61257 1.93503 1.31503 1.87324 1.83805 1.57187 1.33569 1.70105 1.21876 1.21375 0.97990 0.95129 0.86338 1.21449 0.96704 0.97407 1.03652 1.20312 0.94694 1.01747 0.96958 1.20723 0.94066 0.93747 1.02373 0.88736 1.22236 0.97111 0.81830 0.98272 1.86678 1.36244 1.19113 1.94209 1.21778 0.98835 0.95360 1.00107 1.21574 0.82782 0.94567 1.00928 1.20684 1.00367 0.91602 1.01828 0.90778 0.85965 0.88666 0.87979 0.90521 0.89232 0.91016 0.89675 0.91485 0.93377 0.94518 0.94173 0.78232 0.91360 0.90856 0.91619 0.89748 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.64 10.97 55.55 0.61 -19.03 16 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -11.87 9.05 -37.74 -0.34 -12.21 16 8 H 0.08 2.04 7.91 -52.49 -0.41 1.63 16 9 C 0.10 2.48 5.57 -106.83 -0.60 1.88 16 10 C -0.11 -2.87 8.70 -38.87 -0.34 -3.21 16 11 C -0.12 -2.70 10.02 -39.66 -0.40 -3.09 16 12 C -0.15 -3.22 9.53 -39.29 -0.37 -3.59 16 13 C -0.63 -13.83 5.47 -39.67 -0.22 -14.05 16 14 S 2.68 52.08 5.58 -107.50 -0.60 51.48 16 15 O -0.98 -20.24 15.95 -57.17 -0.91 -21.15 16 16 O -0.97 -20.77 15.71 -57.17 -0.90 -21.67 16 17 N -0.99 -15.25 2.53 -113.31 -0.29 -15.53 16 18 C 0.12 1.64 5.62 -4.09 -0.02 1.61 16 19 C -0.15 -2.33 5.74 -28.58 -0.16 -2.50 16 20 C -0.10 -1.42 4.63 -29.78 -0.14 -1.56 16 21 C -0.09 -1.29 2.05 -91.83 -0.19 -1.47 16 22 H 0.09 1.70 7.22 -51.93 -0.37 1.32 16 23 C 0.08 1.07 6.22 37.16 0.23 1.31 16 24 O -0.56 -8.72 12.91 -35.23 -0.45 -9.17 16 25 C -0.12 -1.35 5.24 -27.23 -0.14 -1.50 16 26 C 0.13 1.62 5.97 -2.95 -0.02 1.61 16 27 C -0.12 -2.96 7.46 -38.88 -0.29 -3.25 16 28 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 29 H 0.12 3.14 6.18 -52.49 -0.32 2.81 16 30 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.10 2.03 7.60 -52.48 -0.40 1.63 16 32 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 33 H 0.09 1.29 6.86 -51.93 -0.36 0.93 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.60 5.84 -51.93 -0.30 1.30 16 36 H 0.07 1.07 7.23 -51.93 -0.38 0.70 16 37 H 0.05 0.57 7.35 -51.93 -0.38 0.19 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.04 0.47 7.98 -51.93 -0.41 0.05 16 40 H 0.37 3.99 9.12 45.56 0.42 4.40 16 41 H 0.07 0.66 7.31 -51.93 -0.38 0.28 16 42 H 0.07 0.68 7.66 -51.93 -0.40 0.28 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.14 7.21 -51.93 -0.37 0.76 16 45 H 0.11 2.54 7.53 -52.49 -0.40 2.15 16 LS Contribution 362.79 15.07 5.47 5.47 Total: -1.00 -31.34 362.79 -10.91 -42.25 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.72 Total: 12.38 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: -3.08 Total: -38.26 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.32 Total: -34.57 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -2.26 Total: -51.99 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: 52.08 SS G_CDS: -0.60 Total: 51.48 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.34 -10.91 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815103766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.270 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds