Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86797 * 120.00394 * 2 1 4 4 H 1.48494 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46963 * 300.00133 * 3 2 1 6 6 H 1.48500 * 109.46769 * 59.99787 * 3 2 1 7 7 C 1.39952 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99882 * 163.70741 * 7 2 1 9 9 C 1.41398 * 119.99779 * 343.70601 * 7 2 1 10 10 C 1.40731 * 120.24553 * 334.19401 * 9 7 2 11 11 C 1.37603 * 119.74144 * 180.32051 * 10 9 7 12 12 C 1.38654 * 120.24959 * 359.66039 * 11 10 9 13 13 C 1.38610 * 120.50035 * 0.02562 * 12 11 10 14 14 C 1.37630 * 120.25206 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.13156 * 179.97438 * 14 13 12 16 16 C 1.50708 * 109.46845 * 264.99818 * 15 14 13 17 17 O 1.21280 * 119.99714 * 0.02562 * 16 15 14 18 18 N 1.34769 * 119.99885 * 179.97438 * 16 15 14 19 19 C 1.46497 * 120.00327 * 180.02562 * 18 16 15 20 20 C 1.50693 * 109.47659 * 180.02562 * 19 18 16 21 21 C 1.38390 * 119.92191 * 269.72714 * 20 19 18 22 22 C 1.38358 * 120.30014 * 179.72161 * 21 20 19 23 23 C 1.37961 * 120.15074 * 0.55168 * 22 21 20 24 24 C 1.39614 * 119.84544 * 359.72333 * 23 22 21 25 25 C 1.47725 * 120.14807 * 180.02562 * 24 23 22 26 26 O 1.21473 * 119.99970 * 179.97438 * 25 24 23 27 27 O 1.34712 * 119.99776 * 359.97438 * 25 24 23 28 28 C 1.37925 * 119.93057 * 89.99747 * 20 19 18 29 29 H 0.97000 * 120.00500 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.12846 * 0.02562 * 10 9 7 31 31 H 1.08003 * 119.86877 * 179.68233 * 11 10 9 32 32 H 1.07999 * 119.74604 * 180.02562 * 12 11 10 33 33 H 1.07999 * 119.87528 * 180.02562 * 13 12 11 34 34 H 1.08999 * 109.47170 * 24.99333 * 15 14 13 35 35 H 1.08997 * 109.47113 * 145.00192 * 15 14 13 36 36 H 0.97008 * 120.00294 * 0.02562 * 18 16 15 37 37 H 1.09007 * 109.47177 * 300.00565 * 19 18 16 38 38 H 1.09006 * 109.47027 * 59.99810 * 19 18 16 39 39 H 1.08000 * 119.85345 * 359.97438 * 21 20 19 40 40 H 1.08006 * 119.92291 * 180.25338 * 22 21 20 41 41 H 1.07996 * 120.07658 * 179.74819 * 23 22 21 42 42 H 0.96705 * 116.99948 * 180.02562 * 27 25 24 43 43 H 1.08002 * 120.06931 * 359.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0554 -1.2307 -0.2629 9 6 1.3435 -2.4121 0.3425 10 6 0.2101 -2.3815 1.1763 11 6 -0.4245 -3.5562 1.5089 12 6 0.0443 -4.7661 1.0201 13 6 1.1558 -4.8075 0.1929 14 6 1.8070 -3.6451 -0.1520 15 6 3.0155 -3.6933 -1.0511 16 6 4.2662 -3.7192 -0.2106 17 8 4.1841 -3.7008 0.9993 18 7 5.4756 -3.7637 -0.8035 19 6 6.6914 -3.7894 0.0135 20 6 7.8999 -3.8375 -0.8855 21 6 8.4209 -5.0583 -1.2769 22 6 9.5267 -5.1116 -2.1068 23 6 10.1244 -3.9462 -2.5405 24 6 9.6073 -2.7112 -2.1448 25 6 10.2416 -1.4592 -2.6057 26 8 9.7892 -0.3861 -2.2601 27 8 11.3218 -1.5076 -3.4092 28 6 8.4875 -2.6648 -1.3118 29 1 -0.4851 0.8400 0.0004 30 1 -0.1571 -1.4402 1.5574 31 1 -1.2914 -3.5356 2.1528 32 1 -0.4603 -5.6832 1.2860 33 1 1.5121 -5.7554 -0.1823 34 1 2.9738 -4.5909 -1.6681 35 1 3.0268 -2.8119 -1.6922 36 1 5.5412 -3.7788 -1.7712 37 1 6.7335 -2.8919 0.6306 38 1 6.6797 -4.6709 0.6546 39 1 7.9599 -5.9737 -0.9365 40 1 9.9259 -6.0677 -2.4118 41 1 10.9899 -3.9892 -3.1849 42 1 11.7024 -0.6623 -3.6845 43 1 8.0822 -1.7127 -1.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821324942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = -89.966001 kcal Electronic energy + Delta-G solvation = -27609.061077 eV Core-core repulsion = 23583.266241 eV Total energy + Delta-G solvation = -4025.794836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.78271 -39.55327 -38.81497 -37.27497 -36.42580 -34.71405 -33.57771 -32.02813 -31.65324 -31.24526 -29.41170 -27.40122 -25.71649 -25.13432 -24.74444 -22.17068 -21.28900 -20.89604 -20.52805 -19.34242 -18.29038 -17.75567 -17.12191 -16.40195 -16.26143 -15.97607 -15.78424 -15.67820 -15.30007 -14.68149 -14.50798 -14.39888 -13.72617 -13.56507 -13.45792 -13.28979 -13.10791 -12.75650 -12.56852 -12.40386 -11.98515 -11.90821 -11.71344 -11.52698 -11.42530 -11.12588 -10.98142 -10.94175 -10.93099 -10.63587 -10.34281 -9.55179 -9.44814 -9.44470 -9.33165 -9.12502 -8.99201 -8.74487 -7.27145 -7.25050 -6.69432 -4.30003 0.30281 0.88004 2.17788 2.62356 2.82063 3.00830 3.11884 3.18025 3.30106 3.30832 3.35518 3.86577 3.98490 4.31094 4.45337 4.58257 4.70549 4.77600 4.89275 4.97026 5.34390 5.39247 5.53949 5.59716 5.76914 5.85728 5.86122 5.94673 6.05641 6.09093 6.18401 6.19549 6.32018 6.41491 6.46991 6.54800 6.73186 6.84147 7.13282 7.33842 7.46489 7.53055 7.68256 7.89772 7.98398 8.12124 8.17203 8.35882 8.69414 8.86545 8.96327 9.05894 10.24654 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.002921 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.599428 B = 9584.385560 C =11642.830074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.901 3.099 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.456 4.456 8 H 0.075 0.925 9 C 0.129 3.871 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.240 4.240 13 C -0.081 4.081 14 C -0.181 4.181 15 C -0.070 4.070 16 C 0.515 3.485 17 O -0.519 6.519 18 N -0.743 5.743 19 C 0.161 3.839 20 C -0.111 4.111 21 C -0.063 4.063 22 C -0.136 4.136 23 C -0.058 4.058 24 C -0.132 4.132 25 C 0.526 3.474 26 O -0.508 6.508 27 O -0.514 6.514 28 C -0.035 4.035 29 H 0.279 0.721 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.397 0.603 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.415 0.585 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.757 -6.756 -8.025 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.485 4.485 8 H 0.093 0.907 9 C 0.126 3.874 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.260 4.260 13 C -0.099 4.099 14 C -0.183 4.183 15 C -0.110 4.110 16 C 0.303 3.697 17 O -0.392 6.392 18 N -0.398 5.398 19 C 0.037 3.963 20 C -0.111 4.111 21 C -0.082 4.082 22 C -0.153 4.153 23 C -0.076 4.076 24 C -0.133 4.133 25 C 0.370 3.630 26 O -0.397 6.397 27 O -0.326 6.326 28 C -0.054 4.054 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.230 0.770 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.274 0.726 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 19.177 -6.648 -6.895 21.436 hybrid contribution 0.704 1.390 -0.659 1.692 sum 19.881 -5.258 -7.555 21.909 Atomic orbital electron populations 1.69824 1.07470 1.28932 1.35889 1.25870 0.94678 1.01123 0.92326 0.86370 0.81155 0.81356 0.78537 1.18450 1.20039 1.19712 1.19511 0.97199 0.90939 1.40888 0.90726 1.17348 0.90758 0.91301 0.87979 1.21301 0.99010 0.96669 1.00896 1.20676 0.98673 0.93473 0.99746 1.20301 1.01633 0.96141 1.07895 1.20289 0.95961 0.95501 0.98188 1.19054 0.99347 0.94037 1.05881 1.20265 0.90423 1.02816 0.97465 1.21288 0.84216 0.74738 0.89481 1.90688 1.86707 1.47118 1.14724 1.46205 1.05111 1.78605 1.09876 1.20094 0.80877 1.03390 0.91905 1.19949 0.98125 0.92774 1.00269 1.21476 0.94512 0.97787 0.94387 1.21186 0.96720 0.98530 0.98914 1.21495 0.98454 0.91121 0.96561 1.19014 0.99176 0.90919 1.04172 1.20905 0.77586 0.89355 0.75177 1.90938 1.62576 1.31405 1.54779 1.84536 1.43656 1.41738 1.62685 1.21294 0.92088 0.99431 0.92562 0.91048 0.86524 0.89612 0.89695 0.89788 0.90597 0.88544 0.76968 0.90570 0.90613 0.84853 0.84832 0.84403 0.72620 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.80 10.95 55.55 0.61 -20.19 16 2 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 3 Si 0.90 19.35 29.59 -169.99 -5.03 14.32 16 4 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.46 -12.14 8.14 -37.74 -0.31 -12.45 16 8 H 0.07 1.94 6.67 -52.49 -0.35 1.59 16 9 C 0.13 3.47 5.56 -106.82 -0.59 2.88 16 10 C -0.16 -4.32 8.69 -38.87 -0.34 -4.65 16 11 C -0.11 -2.65 10.02 -39.66 -0.40 -3.04 16 12 C -0.24 -5.65 10.05 -39.29 -0.39 -6.04 16 13 C -0.08 -1.88 9.66 -39.67 -0.38 -2.26 16 14 C -0.18 -4.38 4.43 -103.91 -0.46 -4.84 16 15 C -0.07 -1.36 5.18 -29.03 -0.15 -1.51 16 16 C 0.52 9.85 7.44 -10.99 -0.08 9.77 16 17 O -0.52 -12.29 16.03 5.56 0.09 -12.20 16 18 N -0.74 -10.46 5.55 -61.47 -0.34 -10.80 16 19 C 0.16 2.01 5.79 -5.20 -0.03 1.98 16 20 C -0.11 -1.10 5.24 -104.68 -0.55 -1.65 16 21 C -0.06 -0.50 9.69 -39.48 -0.38 -0.88 16 22 C -0.14 -0.91 10.03 -39.64 -0.40 -1.31 16 23 C -0.06 -0.43 9.62 -39.17 -0.38 -0.81 16 24 C -0.13 -1.29 5.87 -104.98 -0.62 -1.90 16 25 C 0.53 5.42 8.27 34.61 0.29 5.71 16 26 O -0.51 -7.01 17.13 -19.25 -0.33 -7.34 16 27 O -0.51 -3.52 12.68 -40.52 -0.51 -4.03 16 28 C -0.04 -0.38 9.24 -39.17 -0.36 -0.74 16 29 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 30 H 0.12 3.24 6.20 -52.49 -0.33 2.92 16 31 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 32 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 35 H 0.10 1.86 7.08 -51.93 -0.37 1.49 16 36 H 0.40 4.52 8.46 -40.82 -0.35 4.18 16 37 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.57 8.06 -52.48 -0.42 0.14 16 41 H 0.14 0.79 7.61 -52.49 -0.40 0.39 16 42 H 0.41 1.10 9.11 45.56 0.42 1.51 16 43 H 0.14 1.69 7.65 -52.49 -0.40 1.28 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -34.35 376.96 -9.74 -44.09 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.28 Total: 10.35 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -5.63 Total: -19.87 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.27 Total: -30.99 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.75 Total: -23.57 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.35 -9.74 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.872 kcal (2) G-P(sol) polarization free energy of solvation -34.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds