Wall clock time and date at job start Sat Apr 11 2020 05:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34818 * 125.82594 * 2 1 4 4 C 1.36363 * 107.73638 * 180.02562 * 3 2 1 5 5 C 1.48453 * 126.24471 * 179.97438 * 4 3 2 6 6 N 1.33673 * 126.30812 * 180.02562 * 5 4 3 7 7 N 1.28569 * 109.85637 * 179.97438 * 6 5 4 8 8 N 1.28925 * 109.71684 * 0.02562 * 7 6 5 9 9 H 0.96996 * 126.43609 * 180.02562 * 8 7 6 10 10 N 1.31986 * 126.30689 * 359.73287 * 5 4 3 11 11 C 1.41368 * 107.50831 * 359.97438 * 4 3 2 12 12 N 1.39872 * 126.03103 * 180.02562 * 11 4 3 13 13 C 1.34779 * 120.00106 * 179.97438 * 12 11 4 14 14 O 1.21610 * 120.00029 * 359.97438 * 13 12 11 15 15 C 1.47592 * 120.00015 * 180.02562 * 13 12 11 16 16 C 1.40036 * 119.89796 * 359.72794 * 15 13 12 17 17 C 1.36303 * 120.10622 * 179.72158 * 16 15 13 18 18 C 1.40902 * 119.89036 * 0.57121 * 17 16 15 19 19 C 1.41084 * 120.10081 * 179.67665 * 18 17 16 20 20 H 1.07994 * 120.00254 * 204.65904 * 19 18 17 21 21 C 1.40235 * 120.00115 * 24.66216 * 19 18 17 22 22 N 1.30648 * 119.99763 * 17.88054 * 21 19 18 23 23 Si 1.86795 * 120.00405 * 197.88012 * 21 19 18 24 24 H 1.48506 * 109.46834 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47308 * 119.99777 * 23 21 19 26 26 H 1.48502 * 109.47209 * 240.00057 * 23 21 19 27 27 C 1.40901 * 119.79537 * 359.69907 * 18 17 16 28 28 C 1.36294 * 119.89411 * 0.02562 * 27 18 17 29 29 N 1.31111 * 107.93855 * 359.72163 * 11 4 3 30 30 H 1.09000 * 109.46920 * 90.00402 * 1 2 3 31 31 H 1.09003 * 109.46460 * 210.00035 * 1 2 3 32 32 H 1.08999 * 109.47203 * 330.00303 * 1 2 3 33 33 H 1.07999 * 126.13473 * 359.97438 * 3 2 1 34 34 H 0.97004 * 120.00063 * 0.02562 * 12 11 4 35 35 H 1.08006 * 119.94728 * 0.02562 * 16 15 13 36 36 H 1.07997 * 120.05443 * 180.27195 * 17 16 15 37 37 H 0.96994 * 119.99998 * 179.97438 * 22 21 19 38 38 H 1.07995 * 120.04805 * 179.97438 * 27 18 17 39 39 H 1.07999 * 119.94848 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2541 1.0931 0.0000 4 6 3.5504 0.6697 -0.0006 5 6 4.7565 1.5353 -0.0013 6 7 6.0276 1.1216 -0.0024 7 7 6.8170 2.1364 -0.0033 8 7 6.1262 3.2249 -0.0024 9 1 6.4764 4.1294 -0.0031 10 7 4.7712 2.8550 -0.0065 11 6 3.5360 -0.7439 -0.0003 12 7 4.6588 -1.5781 -0.0003 13 6 4.5036 -2.9169 0.0005 14 8 3.3874 -3.3997 0.0016 15 6 5.6883 -3.7972 0.0011 16 6 6.9726 -3.2390 -0.0048 17 6 8.0697 -4.0479 0.0015 18 6 7.9099 -5.4478 0.0019 19 6 9.0424 -6.2892 0.0015 20 1 8.9688 -7.2936 -0.3885 21 6 10.2637 -5.8214 0.5076 22 7 10.2896 -4.7708 1.2838 23 14 11.8534 -6.7002 0.0720 24 1 11.5547 -7.8525 -0.8160 25 1 12.7634 -5.7590 -0.6286 26 1 12.5058 -7.1876 1.3138 27 6 6.6157 -6.0048 0.0021 28 6 5.5246 -5.1879 0.0014 29 7 2.2846 -1.1351 0.0064 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.9197 2.1200 -0.0004 34 1 5.5491 -1.1931 0.0000 35 1 7.0941 -2.1658 -0.0094 36 1 9.0598 -3.6165 0.0014 37 1 11.1343 -4.4474 1.6342 38 1 6.4885 -7.0772 0.0019 39 1 4.5322 -5.6139 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826357548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:28 Heat of formation + Delta-G solvation = 195.571679 kcal Electronic energy + Delta-G solvation = -27593.939275 eV Core-core repulsion = 23541.571442 eV Total energy + Delta-G solvation = -4052.367834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.22279 -41.33178 -38.98895 -37.08846 -34.88149 -33.84556 -33.77054 -33.06820 -32.10490 -30.20628 -29.81744 -29.39467 -27.03718 -25.78924 -24.59205 -23.32403 -22.52723 -21.05439 -20.99291 -20.44751 -19.13867 -18.92463 -17.49686 -17.29623 -16.60181 -16.49674 -15.85217 -15.65444 -15.35851 -14.77204 -14.23236 -14.18981 -14.01014 -13.91646 -13.38060 -13.07573 -12.91844 -12.83556 -12.71628 -12.19656 -12.04645 -11.90538 -11.36907 -11.29028 -11.24649 -11.03742 -10.94055 -10.87616 -10.70461 -10.59098 -10.44680 -9.99630 -9.51979 -9.30736 -8.96149 -8.77113 -8.06585 -7.66718 -7.50116 -7.00270 -4.56714 0.74929 1.47788 2.00008 2.01448 2.30357 2.38591 2.90452 2.98118 3.03641 3.09198 3.13354 3.42220 3.77219 3.89356 3.98098 4.07412 4.56476 4.61704 4.64903 4.99433 5.18417 5.22068 5.33181 5.45488 5.57323 5.61705 5.79414 6.16000 6.17180 6.36292 6.40642 6.76618 6.81967 6.86698 6.98919 7.12927 7.18363 7.39367 7.50056 7.73606 7.85750 7.90901 8.06516 8.10957 8.28875 8.44341 8.66649 8.79417 9.02038 9.91402 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.002964 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.951409 B = 9443.256920 C =11490.752717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.367 5.367 3 C 0.126 3.874 4 C -0.208 4.208 5 C 0.303 3.697 6 N -0.306 5.306 7 N 0.019 4.981 8 N -0.303 5.303 9 H 0.468 0.532 10 N -0.310 5.310 11 C 0.355 3.645 12 N -0.640 5.640 13 C 0.564 3.436 14 O -0.527 6.527 15 C -0.284 4.284 16 C -0.061 4.061 17 C -0.176 4.176 18 C 0.130 3.870 19 C -0.439 4.439 20 H 0.086 0.914 21 C 0.074 3.926 22 N -0.767 5.767 23 Si 0.913 3.087 24 H -0.257 1.257 25 H -0.269 1.269 26 H -0.272 1.272 27 C -0.239 4.239 28 C -0.018 4.018 29 N -0.274 5.274 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.186 0.814 34 H 0.427 0.573 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.287 0.713 38 H 0.099 0.901 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 16.889 -1.601 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.146 5.146 3 C -0.029 4.029 4 C -0.226 4.226 5 C 0.022 3.978 6 N -0.185 5.185 7 N 0.023 4.977 8 N -0.150 5.150 9 H 0.322 0.678 10 N -0.154 5.154 11 C 0.094 3.906 12 N -0.293 5.293 13 C 0.359 3.641 14 O -0.403 6.403 15 C -0.289 4.289 16 C -0.080 4.080 17 C -0.195 4.195 18 C 0.126 3.874 19 C -0.467 4.467 20 H 0.104 0.896 21 C -0.148 4.148 22 N -0.390 5.390 23 Si 0.736 3.264 24 H -0.181 1.181 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.259 4.259 28 C -0.037 4.037 29 N -0.104 5.104 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.203 0.797 34 H 0.268 0.732 35 H 0.112 0.888 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.334 15.743 -1.445 18.887 hybrid contribution 1.558 1.345 -0.034 2.059 sum -8.776 17.088 -1.480 19.267 Atomic orbital electron populations 1.21919 0.73199 1.04825 1.03737 1.48411 1.07065 1.03525 1.55555 1.22357 0.89179 0.94080 0.97240 1.16752 0.88627 0.89551 1.27685 1.22553 0.91947 0.88081 0.95178 1.75364 0.99611 1.21625 1.21876 1.78376 1.21695 0.89085 1.08562 1.50943 1.02347 1.10686 1.51013 0.67810 1.78800 0.95894 1.12882 1.27860 1.19290 0.88401 0.87435 0.95440 1.43457 1.06611 1.05938 1.73274 1.18906 0.90251 0.80270 0.74661 1.90729 1.26308 1.74075 1.49196 1.18730 0.90621 0.92951 1.26580 1.20564 0.92307 0.97470 0.97639 1.20976 0.97626 0.93449 1.07485 1.17812 0.91950 0.92483 0.85121 1.19892 0.93097 1.00445 1.33261 0.89630 1.26118 1.01566 0.94619 0.92503 1.69753 1.29288 1.19942 1.20036 0.86174 0.80236 0.80428 0.79530 1.18065 1.19360 1.19689 1.20694 0.92456 0.97833 1.14881 1.20334 0.97611 0.91768 0.93975 1.78288 0.98816 1.03352 1.29917 0.90348 0.88691 0.89275 0.79672 0.73209 0.88808 0.86042 0.90206 0.88304 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.74 11.45 59.85 0.69 1.42 16 2 N -0.37 -4.58 4.00 -67.91 -0.27 -4.85 16 3 C 0.13 1.39 11.41 -16.92 -0.19 1.20 16 4 C -0.21 -3.05 6.11 -105.17 -0.64 -3.69 16 5 C 0.30 4.31 8.14 -156.46 -1.27 3.04 16 6 N -0.31 -4.69 10.75 32.13 0.35 -4.35 16 7 N 0.02 0.25 13.42 60.35 0.81 1.06 16 8 N -0.30 -2.86 8.44 60.35 0.51 -2.35 16 9 H 0.47 2.09 8.96 -331.92 -2.98 -0.89 16 10 N -0.31 -3.61 12.89 32.14 0.41 -3.20 16 11 C 0.35 6.50 7.81 -154.39 -1.21 5.29 16 12 N -0.64 -12.78 5.39 -11.90 -0.06 -12.85 16 13 C 0.56 12.96 7.73 -12.44 -0.10 12.86 16 14 O -0.53 -13.21 15.04 5.27 0.08 -13.13 16 15 C -0.28 -6.77 5.89 -104.73 -0.62 -7.38 16 16 C -0.06 -1.41 9.47 -39.60 -0.38 -1.78 16 17 C -0.18 -4.41 8.64 -39.27 -0.34 -4.75 16 18 C 0.13 3.34 5.58 -106.80 -0.60 2.74 16 19 C -0.44 -10.99 9.04 -37.75 -0.34 -11.34 16 20 H 0.09 2.04 7.91 -52.49 -0.42 1.63 16 21 C 0.07 1.73 5.13 -17.31 -0.09 1.64 16 22 N -0.77 -18.55 10.95 55.56 0.61 -17.94 16 23 Si 0.91 17.39 29.60 -169.99 -5.03 12.36 16 24 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 26 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 27 C -0.24 -5.85 9.73 -39.27 -0.38 -6.24 16 28 C -0.02 -0.42 9.52 -39.61 -0.38 -0.80 16 29 N -0.27 -5.02 10.76 31.56 0.34 -4.68 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.19 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.43 8.03 5.16 -40.82 -0.21 7.82 16 35 H 0.09 1.95 6.37 -52.48 -0.33 1.61 16 36 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 37 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 38 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 39 H 0.10 2.36 7.63 -52.49 -0.40 1.96 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -33.92 349.24 -8.75 -42.66 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.91 Total: 9.78 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -5.84 Total: -7.79 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 2.69 Total: -49.15 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.92 -8.75 -42.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826357548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.232 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 204.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds