Wall clock time and date at job start Sat Apr 11 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34818 * 125.82594 * 2 1 4 4 C 1.36363 * 107.73638 * 180.02562 * 3 2 1 5 5 C 1.48453 * 126.24471 * 179.97438 * 4 3 2 6 6 N 1.33673 * 126.30812 * 180.02562 * 5 4 3 7 7 N 1.28569 * 109.85637 * 179.97438 * 6 5 4 8 8 N 1.28925 * 109.71684 * 0.02562 * 7 6 5 9 9 H 0.96996 * 126.43609 * 180.02562 * 8 7 6 10 10 N 1.31986 * 126.30689 * 359.73287 * 5 4 3 11 11 C 1.41368 * 107.50831 * 359.97438 * 4 3 2 12 12 N 1.39872 * 126.03103 * 180.02562 * 11 4 3 13 13 C 1.34779 * 120.00106 * 179.97438 * 12 11 4 14 14 O 1.21610 * 120.00029 * 359.97438 * 13 12 11 15 15 C 1.47592 * 120.00015 * 180.02562 * 13 12 11 16 16 C 1.40036 * 119.89796 * 359.72794 * 15 13 12 17 17 C 1.36303 * 120.10622 * 179.72158 * 16 15 13 18 18 C 1.40902 * 119.89036 * 0.57121 * 17 16 15 19 19 C 1.41084 * 120.10081 * 179.67665 * 18 17 16 20 20 H 1.07994 * 120.00254 * 204.65904 * 19 18 17 21 21 C 1.40235 * 120.00115 * 24.66216 * 19 18 17 22 22 N 1.30648 * 119.99763 * 17.88054 * 21 19 18 23 23 Si 1.86795 * 120.00405 * 197.88012 * 21 19 18 24 24 H 1.48506 * 109.46834 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47308 * 119.99777 * 23 21 19 26 26 H 1.48502 * 109.47209 * 240.00057 * 23 21 19 27 27 C 1.40901 * 119.79537 * 359.69907 * 18 17 16 28 28 C 1.36294 * 119.89411 * 0.02562 * 27 18 17 29 29 N 1.31111 * 107.93855 * 359.72163 * 11 4 3 30 30 H 1.09000 * 109.46920 * 90.00402 * 1 2 3 31 31 H 1.09003 * 109.46460 * 210.00035 * 1 2 3 32 32 H 1.08999 * 109.47203 * 330.00303 * 1 2 3 33 33 H 1.07999 * 126.13473 * 359.97438 * 3 2 1 34 34 H 0.97004 * 120.00063 * 0.02562 * 12 11 4 35 35 H 1.08006 * 119.94728 * 0.02562 * 16 15 13 36 36 H 1.07997 * 120.05443 * 180.27195 * 17 16 15 37 37 H 0.96994 * 119.99998 * 179.97438 * 22 21 19 38 38 H 1.07995 * 120.04805 * 179.97438 * 27 18 17 39 39 H 1.07999 * 119.94848 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2541 1.0931 0.0000 4 6 3.5504 0.6697 -0.0006 5 6 4.7565 1.5353 -0.0013 6 7 6.0276 1.1216 -0.0024 7 7 6.8170 2.1364 -0.0033 8 7 6.1262 3.2249 -0.0024 9 1 6.4764 4.1294 -0.0031 10 7 4.7712 2.8550 -0.0065 11 6 3.5360 -0.7439 -0.0003 12 7 4.6588 -1.5781 -0.0003 13 6 4.5036 -2.9169 0.0005 14 8 3.3874 -3.3997 0.0016 15 6 5.6883 -3.7972 0.0011 16 6 6.9726 -3.2390 -0.0048 17 6 8.0697 -4.0479 0.0015 18 6 7.9099 -5.4478 0.0019 19 6 9.0424 -6.2892 0.0015 20 1 8.9688 -7.2936 -0.3885 21 6 10.2637 -5.8214 0.5076 22 7 10.2896 -4.7708 1.2838 23 14 11.8534 -6.7002 0.0720 24 1 11.5547 -7.8525 -0.8160 25 1 12.7634 -5.7590 -0.6286 26 1 12.5058 -7.1876 1.3138 27 6 6.6157 -6.0048 0.0021 28 6 5.5246 -5.1879 0.0014 29 7 2.2846 -1.1351 0.0064 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.9197 2.1200 -0.0004 34 1 5.5491 -1.1931 0.0000 35 1 7.0941 -2.1658 -0.0094 36 1 9.0598 -3.6165 0.0014 37 1 11.1343 -4.4474 1.6342 38 1 6.4885 -7.0772 0.0019 39 1 4.5322 -5.6139 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826357548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:27 Heat of formation + Delta-G solvation = 172.548326 kcal Electronic energy + Delta-G solvation = -27594.937643 eV Core-core repulsion = 23541.571442 eV Total energy + Delta-G solvation = -4053.366201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.18716 -42.45926 -40.69085 -38.91977 -36.22339 -35.67988 -34.88768 -34.02906 -33.26354 -31.87120 -31.30013 -30.98514 -28.26751 -27.29501 -25.53110 -24.62625 -23.87471 -22.84596 -22.43526 -21.70237 -20.56312 -20.00862 -19.35581 -18.57449 -17.88951 -17.56923 -17.29158 -16.93449 -16.69804 -15.89641 -15.74413 -15.68180 -15.54066 -15.23283 -15.02032 -14.50641 -14.25105 -13.91607 -13.87597 -13.67708 -13.40705 -13.21741 -13.13315 -12.84493 -12.64458 -12.38612 -12.26497 -12.04140 -11.83872 -11.83408 -11.77149 -11.69017 -11.37426 -11.11389 -10.73529 -9.95007 -9.58981 -9.47162 -9.20110 -8.78915 -6.47936 -0.17911 0.32029 0.53736 1.02190 1.17036 1.19313 1.38657 1.40642 1.44810 1.57749 1.86870 2.17748 2.18444 2.29519 2.80124 2.81678 3.09964 3.69373 3.72888 3.84061 4.17628 4.26067 4.29684 4.41557 4.45785 4.48577 4.52439 4.62677 4.79213 4.84358 4.93950 5.03496 5.15007 5.29073 5.56171 5.63195 5.76595 5.80304 5.91312 5.98079 6.00152 6.18905 6.21961 6.54292 6.76643 6.79792 6.88571 7.11892 7.30864 8.16269 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.002964 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.951409 B = 9443.256920 C =11490.752717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.359 5.359 3 C 0.157 3.843 4 C -0.227 4.227 5 C 0.292 3.708 6 N -0.346 5.346 7 N 0.009 4.991 8 N -0.270 5.270 9 H 0.489 0.511 10 N -0.295 5.295 11 C 0.323 3.677 12 N -0.636 5.636 13 C 0.565 3.435 14 O -0.555 6.555 15 C -0.296 4.296 16 C -0.054 4.054 17 C -0.194 4.194 18 C 0.104 3.896 19 C -0.466 4.466 20 H 0.089 0.911 21 C 0.036 3.964 22 N -0.794 5.794 23 Si 0.989 3.011 24 H -0.255 1.255 25 H -0.261 1.261 26 H -0.263 1.263 27 C -0.250 4.250 28 C -0.025 4.025 29 N -0.324 5.324 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.240 0.760 34 H 0.429 0.571 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.298 0.702 38 H 0.109 0.891 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.663 19.402 -1.722 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.138 5.138 3 C 0.002 3.998 4 C -0.245 4.245 5 C 0.011 3.989 6 N -0.224 5.224 7 N 0.013 4.987 8 N -0.122 5.122 9 H 0.348 0.652 10 N -0.140 5.140 11 C 0.064 3.936 12 N -0.288 5.288 13 C 0.359 3.641 14 O -0.434 6.434 15 C -0.301 4.301 16 C -0.073 4.073 17 C -0.214 4.214 18 C 0.101 3.899 19 C -0.493 4.493 20 H 0.107 0.893 21 C -0.183 4.183 22 N -0.417 5.417 23 Si 0.809 3.191 24 H -0.179 1.179 25 H -0.185 1.185 26 H -0.188 1.188 27 C -0.270 4.270 28 C -0.044 4.044 29 N -0.154 5.154 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.154 0.846 33 H 0.256 0.744 34 H 0.271 0.729 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.636 18.308 -1.562 21.231 hybrid contribution 1.501 0.781 0.031 1.692 sum -9.135 19.089 -1.531 21.217 Atomic orbital electron populations 1.22425 0.70127 1.06681 1.05464 1.48783 1.08519 1.02446 1.54073 1.23071 0.87469 0.95543 0.93719 1.16934 0.90392 0.88008 1.29189 1.22530 0.91580 0.88765 0.96036 1.75329 1.00485 1.22961 1.23588 1.78319 1.21689 0.89527 1.09186 1.50975 1.01638 1.11268 1.48322 0.65226 1.78737 0.96560 1.11516 1.27229 1.19497 0.87933 0.88796 0.97351 1.43134 1.07723 1.05135 1.72788 1.18738 0.89409 0.81381 0.74530 1.90694 1.26987 1.74953 1.50733 1.18961 0.91375 0.93287 1.26450 1.20706 0.91698 0.98421 0.96430 1.20984 0.97732 0.93614 1.09027 1.18149 0.92783 0.93135 0.85865 1.20180 0.94093 1.00816 1.34167 0.89282 1.26992 1.04455 0.95251 0.91652 1.69777 1.30906 1.20894 1.20145 0.85039 0.75503 0.79151 0.79407 1.17874 1.18508 1.18771 1.20851 0.92334 0.98498 1.15291 1.20469 0.97738 0.92200 0.94024 1.78105 0.99630 1.07106 1.30548 0.88663 0.89670 0.84605 0.74414 0.72874 0.86778 0.86719 0.89075 0.87254 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 11.45 127.77 1.46 2.48 16 2 N -0.36 -8.20 4.00 -368.78 -1.48 -9.68 16 3 C 0.16 2.98 11.41 83.80 0.96 3.94 16 4 C -0.23 -6.40 6.11 -20.22 -0.12 -6.52 16 5 C 0.29 7.91 8.14 137.43 1.12 9.03 16 6 N -0.35 -10.48 10.75 -52.27 -0.56 -11.04 16 7 N 0.01 0.22 13.42 37.02 0.50 0.71 16 8 N -0.27 -4.47 8.44 37.02 0.31 -4.16 16 9 H 0.49 2.95 8.96 -340.35 -3.05 -0.10 16 10 N -0.30 -6.10 12.89 -52.24 -0.67 -6.77 16 11 C 0.32 11.98 7.81 133.70 1.04 13.03 16 12 N -0.64 -26.26 5.39 -309.81 -1.67 -27.93 16 13 C 0.56 27.00 7.73 86.71 0.67 27.67 16 14 O -0.56 -28.94 15.04 -4.06 -0.06 -29.00 16 15 C -0.30 -14.66 5.89 -19.94 -0.12 -14.77 16 16 C -0.05 -2.58 9.47 22.25 0.21 -2.37 16 17 C -0.19 -10.08 8.64 22.47 0.19 -9.89 16 18 C 0.10 5.54 5.58 -21.28 -0.12 5.42 16 19 C -0.47 -23.77 9.04 23.45 0.21 -23.56 16 20 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 21 C 0.04 1.69 5.13 85.35 0.44 2.13 16 22 N -0.79 -38.72 10.95 21.87 0.24 -38.48 16 23 Si 0.99 35.17 29.60 68.60 2.03 37.20 16 24 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 25 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 26 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 27 C -0.25 -12.71 9.73 22.47 0.22 -12.49 16 28 C -0.03 -1.26 9.52 22.25 0.21 -1.05 16 29 N -0.32 -11.91 10.76 -54.05 -0.58 -12.49 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.24 1.80 8.06 -2.91 -0.02 1.77 16 34 H 0.43 16.75 5.16 -92.71 -0.48 16.27 16 35 H 0.11 4.89 6.37 -2.91 -0.02 4.87 16 36 H 0.11 6.02 6.16 -2.91 -0.02 6.00 16 37 H 0.30 12.86 8.29 -92.71 -0.77 12.09 16 38 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 39 H 0.11 5.12 7.63 -2.91 -0.02 5.10 16 Total: -1.00 -77.70 349.24 2.07 -75.63 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -2.36 Total: 32.94 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 6.38 Total: -6.95 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -3.91 Total: -109.82 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.06 Total: -29.00 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.20 kcal Total: -77.70 2.07 -75.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826357548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.174 kcal (2) G-P(sol) polarization free energy of solvation -77.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds