Wall clock time and date at job start Sat Apr 11 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48508 * 109.46935 * 269.99784 * 3 2 1 5 5 H 1.48500 * 109.47103 * 29.99043 * 3 2 1 6 6 H 1.48498 * 109.47343 * 149.99777 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.28620 * 299.32730 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.52999 * 109.46697 * 74.48907 * 14 13 12 16 16 S 1.81402 * 109.47065 * 180.02562 * 15 14 13 17 17 O 1.42099 * 108.57926 * 294.48890 * 16 15 14 18 18 O 1.42099 * 108.57946 * 65.51418 * 16 15 14 19 19 C 1.81401 * 101.92245 * 180.02562 * 16 15 14 20 20 C 1.50705 * 109.47042 * 179.97438 * 19 16 15 21 21 C 1.38234 * 120.00032 * 269.72761 * 20 19 16 22 22 C 1.38238 * 119.99804 * 179.81302 * 21 20 19 23 23 C 1.38232 * 120.00028 * 0.39260 * 22 21 20 24 24 C 1.38235 * 120.00219 * 359.85868 * 23 22 21 25 25 C 1.38236 * 119.99933 * 359.95709 * 24 23 22 26 26 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 27 27 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 28 28 H 0.96695 * 113.99929 * 60.67881 * 10 9 7 29 29 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 30 30 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 31 31 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 32 32 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 33 33 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 34 34 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 35 35 H 1.09001 * 109.47808 * 300.00257 * 15 14 13 36 36 H 1.08997 * 109.47144 * 60.00574 * 15 14 13 37 37 H 1.08998 * 109.47212 * 299.99768 * 19 16 15 38 38 H 1.08998 * 109.47135 * 59.99809 * 19 16 15 39 39 H 1.07994 * 119.99913 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.99540 * 180.23051 * 22 21 20 41 41 H 1.07998 * 120.00211 * 179.83570 * 23 22 21 42 42 H 1.07995 * 120.00303 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.00450 * 179.97438 * 25 24 23 44 44 H 1.08999 * 110.41133 * 201.79165 * 26 13 12 45 45 H 1.09001 * 110.41003 * 79.35561 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4342 -2.5997 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0992 -5.6176 -3.1988 16 16 3.6909 -7.3148 -3.4441 17 8 4.9374 -7.4604 -2.7776 18 8 2.6321 -8.2120 -3.1391 19 6 3.9851 -7.3540 -5.2337 20 6 4.4922 -8.7169 -5.6296 21 6 5.8506 -8.9728 -5.6396 22 6 6.3155 -10.2240 -5.9991 23 6 5.4225 -11.2169 -6.3563 24 6 4.0643 -10.9594 -6.3513 25 6 3.5992 -9.7093 -5.9882 26 6 2.2350 -3.6865 -0.0722 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2327 -1.9035 1.2436 29 1 -0.6629 -2.7545 -1.0032 30 1 0.5035 -1.7313 -1.8934 31 1 0.3255 -4.7428 -1.7457 32 1 0.9060 -3.7050 -3.0847 33 1 3.6996 -5.5501 -1.1310 34 1 2.0260 -6.0964 -1.3934 35 1 2.1933 -5.4609 -3.7843 36 1 3.8669 -4.9146 -3.5219 37 1 3.0535 -7.1457 -5.7597 38 1 4.7272 -6.6002 -5.4965 39 1 6.5485 -8.1960 -5.3642 40 1 7.3767 -10.4251 -6.0033 41 1 5.7858 -12.1936 -6.6397 42 1 3.3667 -11.7349 -6.6307 43 1 2.5382 -9.5079 -5.9846 44 1 3.2146 -3.3920 0.3043 45 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829998507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:33 Heat of formation + Delta-G solvation = -86.356144 kcal Electronic energy + Delta-G solvation = -26922.543069 eV Core-core repulsion = 23032.348720 eV Total energy + Delta-G solvation = -3890.194349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.61356 -38.51240 -37.08223 -36.12753 -35.25857 -33.43927 -32.14707 -32.02806 -31.27643 -28.69067 -27.92988 -27.58227 -24.62729 -22.99055 -22.98355 -21.82002 -20.30255 -19.52715 -18.97298 -17.30839 -17.05714 -17.04083 -16.42810 -16.11648 -15.51205 -15.42132 -15.16017 -14.92864 -14.71517 -14.12988 -13.83412 -13.79960 -13.65928 -13.16194 -13.13437 -13.04995 -12.67734 -12.26049 -12.19853 -12.16740 -12.08554 -11.74087 -11.58980 -11.40247 -11.30668 -11.23376 -11.11425 -10.87077 -10.75817 -10.50347 -10.46922 -10.32486 -9.94975 -9.29711 -9.09186 -9.04939 -8.58341 -8.15095 -7.98257 -6.17804 -4.23359 -0.32196 0.98954 1.03029 2.58328 3.24775 3.31753 3.31935 3.36420 3.46783 3.79020 4.06360 4.33919 4.34017 4.43425 4.63016 4.63758 4.70692 4.75516 4.85200 5.02821 5.10414 5.11354 5.21876 5.40967 5.51966 5.57129 5.61549 5.66059 5.81161 5.90596 6.05813 6.06120 6.10096 6.13430 6.13854 6.31132 6.44851 6.58398 6.82778 6.98725 7.15200 7.45514 7.59565 7.60650 7.83730 8.19879 8.79207 9.41149 9.50213 10.89723 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027904 B = 0.002197 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.187953 B =12740.652576 C =13069.414441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.065 3.935 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.249 3.751 10 O -0.594 6.594 11 C -0.121 4.121 12 C 0.026 3.974 13 N -0.492 5.492 14 C 0.054 3.946 15 C -0.600 4.600 16 S 2.412 3.588 17 O -0.931 6.931 18 O -0.933 6.933 19 C -0.570 4.570 20 C -0.090 4.090 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.103 4.103 26 C 0.049 3.951 27 H 0.266 0.734 28 H 0.383 0.617 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.081 0.919 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 -17.572 -14.961 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.209 3.791 10 O -0.403 6.403 11 C -0.160 4.160 12 C -0.102 4.102 13 N -0.217 5.217 14 C -0.076 4.076 15 C -0.730 4.730 16 S 2.594 3.406 17 O -0.928 6.928 18 O -0.930 6.930 19 C -0.697 4.697 20 C -0.091 4.091 21 C -0.121 4.121 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.138 4.138 25 C -0.122 4.122 26 C -0.079 4.079 27 H 0.075 0.925 28 H 0.233 0.767 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.099 0.901 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.121 -18.274 -14.499 24.701 hybrid contribution -0.642 1.628 -0.548 1.834 sum 7.479 -16.646 -15.047 23.653 Atomic orbital electron populations 1.69696 1.05901 1.27311 1.51192 1.25019 0.95008 0.99449 0.94181 0.86457 0.79867 0.82749 0.78081 1.20654 1.21240 1.19810 1.21639 0.93573 0.90298 1.50136 0.91912 1.19247 0.86433 0.91482 0.81954 1.86088 1.52099 1.55771 1.46337 1.22863 0.98412 0.95404 0.99291 1.23292 0.88322 0.98894 0.99659 1.65377 1.21744 1.19050 1.15539 1.21863 1.01576 0.93119 0.91056 1.30343 1.13263 1.22643 1.06728 1.08432 0.76054 0.78360 0.77722 1.93583 1.43184 1.85443 1.70613 1.93581 1.56598 1.60979 1.81865 1.29379 1.11551 1.02320 1.26420 1.18947 0.94166 0.92705 1.03315 1.21203 0.94550 0.97901 0.98496 1.21191 1.00143 0.93067 0.99338 1.21284 0.93461 0.99363 0.99024 1.21187 0.95869 0.96761 0.99935 1.21198 0.99889 0.93147 0.97963 1.23059 1.00827 0.97677 0.86289 0.92458 0.76669 0.92900 0.90506 0.94863 0.91469 0.89509 0.93319 0.85029 0.83956 0.83966 0.83851 0.85084 0.85407 0.85651 0.85426 0.85139 0.90069 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.94 10.81 55.43 0.60 -23.34 16 2 C 0.06 1.71 5.02 -17.82 -0.09 1.62 16 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -13.85 8.10 -34.44 -0.28 -14.13 16 8 H 0.06 1.69 7.53 -52.49 -0.40 1.29 16 9 C 0.25 6.16 1.05 -90.39 -0.10 6.07 16 10 O -0.59 -15.44 12.94 -35.23 -0.46 -15.90 16 11 C -0.12 -2.76 5.55 -25.35 -0.14 -2.90 16 12 C 0.03 0.49 5.93 -2.09 -0.01 0.48 16 13 N -0.49 -9.35 5.34 -229.83 -1.23 -10.57 16 14 C 0.05 0.83 4.84 -3.82 -0.02 0.81 16 15 C -0.60 -6.63 5.92 37.16 0.22 -6.41 16 16 S 2.41 26.66 4.70 -107.50 -0.51 26.15 16 17 O -0.93 -13.21 18.10 -57.83 -1.05 -14.25 16 18 O -0.93 -13.27 18.10 -57.83 -1.05 -14.32 16 19 C -0.57 -4.29 5.94 36.01 0.21 -4.07 16 20 C -0.09 -0.86 5.14 -104.62 -0.54 -1.40 16 21 C -0.10 -0.95 9.70 -39.58 -0.38 -1.33 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.11 -0.86 10.05 -39.58 -0.40 -1.26 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 25 C -0.10 -0.95 9.70 -39.58 -0.38 -1.33 16 26 C 0.05 1.06 5.74 -2.18 -0.01 1.05 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.38 10.03 7.32 45.56 0.33 10.36 16 29 H 0.05 1.21 7.98 -51.93 -0.41 0.80 16 30 H 0.08 1.90 7.23 -51.93 -0.38 1.53 16 31 H 0.03 0.59 7.75 -51.93 -0.40 0.19 16 32 H 0.07 1.11 7.86 -51.93 -0.41 0.70 16 33 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 34 H 0.05 0.74 7.77 -51.93 -0.40 0.34 16 35 H 0.13 1.21 7.47 -51.92 -0.39 0.82 16 36 H 0.14 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.14 0.70 8.09 -51.92 -0.42 0.28 16 38 H 0.14 0.71 8.08 -51.93 -0.42 0.29 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.08 1.76 7.67 -51.93 -0.40 1.36 16 45 H 0.04 0.74 7.94 -51.93 -0.41 0.33 16 LS Contribution 381.12 15.07 5.74 5.74 Total: -1.00 -33.98 381.12 -11.87 -45.85 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.20 Total: 10.44 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -2.71 Total: -25.54 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: -0.63 Total: -33.91 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -2.55 Total: -44.47 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 26.66 SS G_CDS: -0.51 Total: 26.15 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.98 -11.87 -45.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829998507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.510 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds