Wall clock time and date at job start Sat Apr 11 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48508 * 109.46935 * 269.99784 * 3 2 1 5 5 H 1.48500 * 109.47103 * 29.99043 * 3 2 1 6 6 H 1.48498 * 109.47343 * 149.99777 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.28620 * 299.32730 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.52999 * 109.46697 * 74.48907 * 14 13 12 16 16 S 1.81402 * 109.47065 * 180.02562 * 15 14 13 17 17 O 1.42099 * 108.57926 * 294.48890 * 16 15 14 18 18 O 1.42099 * 108.57946 * 65.51418 * 16 15 14 19 19 C 1.81401 * 101.92245 * 180.02562 * 16 15 14 20 20 C 1.50705 * 109.47042 * 179.97438 * 19 16 15 21 21 C 1.38234 * 120.00032 * 269.72761 * 20 19 16 22 22 C 1.38238 * 119.99804 * 179.81302 * 21 20 19 23 23 C 1.38232 * 120.00028 * 0.39260 * 22 21 20 24 24 C 1.38235 * 120.00219 * 359.85868 * 23 22 21 25 25 C 1.38236 * 119.99933 * 359.95709 * 24 23 22 26 26 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 27 27 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 28 28 H 0.96695 * 113.99929 * 60.67881 * 10 9 7 29 29 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 30 30 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 31 31 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 32 32 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 33 33 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 34 34 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 35 35 H 1.09001 * 109.47808 * 300.00257 * 15 14 13 36 36 H 1.08997 * 109.47144 * 60.00574 * 15 14 13 37 37 H 1.08998 * 109.47212 * 299.99768 * 19 16 15 38 38 H 1.08998 * 109.47135 * 59.99809 * 19 16 15 39 39 H 1.07994 * 119.99913 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.99540 * 180.23051 * 22 21 20 41 41 H 1.07998 * 120.00211 * 179.83570 * 23 22 21 42 42 H 1.07995 * 120.00303 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.00450 * 179.97438 * 25 24 23 44 44 H 1.08999 * 110.41133 * 201.79165 * 26 13 12 45 45 H 1.09001 * 110.41003 * 79.35561 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4342 -2.5997 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0992 -5.6176 -3.1988 16 16 3.6909 -7.3148 -3.4441 17 8 4.9374 -7.4604 -2.7776 18 8 2.6321 -8.2120 -3.1391 19 6 3.9851 -7.3540 -5.2337 20 6 4.4922 -8.7169 -5.6296 21 6 5.8506 -8.9728 -5.6396 22 6 6.3155 -10.2240 -5.9991 23 6 5.4225 -11.2169 -6.3563 24 6 4.0643 -10.9594 -6.3513 25 6 3.5992 -9.7093 -5.9882 26 6 2.2350 -3.6865 -0.0722 27 1 -0.4849 0.8401 -0.0004 28 1 -0.2327 -1.9035 1.2436 29 1 -0.6629 -2.7545 -1.0032 30 1 0.5035 -1.7313 -1.8934 31 1 0.3255 -4.7428 -1.7457 32 1 0.9060 -3.7050 -3.0847 33 1 3.6996 -5.5501 -1.1310 34 1 2.0260 -6.0964 -1.3934 35 1 2.1933 -5.4609 -3.7843 36 1 3.8669 -4.9146 -3.5219 37 1 3.0535 -7.1457 -5.7597 38 1 4.7272 -6.6002 -5.4965 39 1 6.5485 -8.1960 -5.3642 40 1 7.3767 -10.4251 -6.0033 41 1 5.7858 -12.1936 -6.6397 42 1 3.3667 -11.7349 -6.6307 43 1 2.5382 -9.5079 -5.9846 44 1 3.2146 -3.3920 0.3043 45 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829998507.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:33 Heat of formation + Delta-G solvation = -112.478813 kcal Electronic energy + Delta-G solvation = -26923.675833 eV Core-core repulsion = 23032.348720 eV Total energy + Delta-G solvation = -3891.327113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.19868 -40.15048 -38.03212 -37.13162 -36.93731 -34.16021 -34.02903 -33.45640 -31.85405 -30.18035 -29.54643 -28.39419 -26.46629 -24.26642 -23.57141 -22.53862 -21.75763 -21.35574 -19.85851 -19.04417 -18.04682 -17.88716 -17.29474 -16.94808 -16.86822 -16.76845 -16.29714 -16.04531 -15.96037 -15.64952 -15.45376 -14.54802 -14.35488 -14.28102 -14.21030 -13.98185 -13.79645 -13.77873 -13.59732 -13.27372 -13.13894 -13.06189 -12.93559 -12.84154 -12.49425 -12.36782 -12.32662 -12.16984 -12.10745 -11.98909 -11.95270 -11.89664 -11.51919 -10.95682 -10.59916 -10.13186 -9.89979 -9.68603 -9.48573 -8.18619 -6.31300 -1.14877 0.38463 0.42857 1.41571 1.43864 1.53448 1.80270 2.41351 2.51459 2.82142 2.98431 3.04386 3.15446 3.44887 3.55949 3.74025 3.84645 3.94996 4.10092 4.17528 4.22869 4.25748 4.26541 4.36225 4.45893 4.52783 4.54076 4.55804 4.56738 4.65990 4.80295 4.90913 5.02265 5.03168 5.09906 5.21807 5.34625 5.48428 5.48607 5.55963 5.65727 5.76896 5.88213 6.02227 6.06064 6.21813 6.73312 7.36290 7.44306 8.87291 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027904 B = 0.002197 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.187953 B =12740.652576 C =13069.414441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.025 3.975 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.229 3.771 10 O -0.603 6.603 11 C -0.114 4.114 12 C 0.032 3.968 13 N -0.495 5.495 14 C 0.042 3.958 15 C -0.595 4.595 16 S 2.414 3.586 17 O -0.972 6.972 18 O -0.973 6.973 19 C -0.546 4.546 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.117 4.117 24 C -0.131 4.131 25 C -0.122 4.122 26 C 0.052 3.948 27 H 0.268 0.732 28 H 0.377 0.623 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.074 0.926 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -18.000 -17.347 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.070 0.930 9 C 0.190 3.810 10 O -0.412 6.412 11 C -0.153 4.153 12 C -0.095 4.095 13 N -0.220 5.220 14 C -0.088 4.088 15 C -0.725 4.725 16 S 2.602 3.398 17 O -0.969 6.969 18 O -0.970 6.970 19 C -0.676 4.676 20 C -0.115 4.115 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.149 4.149 25 C -0.141 4.141 26 C -0.076 4.076 27 H 0.077 0.923 28 H 0.227 0.773 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.174 0.826 36 H 0.181 0.819 37 H 0.192 0.808 38 H 0.192 0.808 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.165 0.835 43 H 0.158 0.842 44 H 0.092 0.908 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.851 -18.710 -16.843 26.685 hybrid contribution -0.847 1.683 0.144 1.889 sum 8.005 -17.027 -16.699 25.157 Atomic orbital electron populations 1.69776 1.06717 1.27988 1.51056 1.25677 0.95845 1.02169 0.93796 0.85547 0.78557 0.79212 0.78191 1.19997 1.20805 1.19968 1.21831 0.93283 0.91724 1.50994 0.92955 1.19553 0.87123 0.92154 0.82209 1.86083 1.52145 1.55505 1.47460 1.22643 0.97672 0.96497 0.98466 1.23281 0.88188 0.97203 1.00876 1.65363 1.21753 1.21625 1.13234 1.22008 1.01436 0.90926 0.94398 1.30295 1.15223 1.23145 1.03831 1.08124 0.74575 0.77675 0.79430 1.93529 1.44360 1.85862 1.73160 1.93527 1.57585 1.62190 1.83710 1.29185 1.14241 1.02566 1.21614 1.19225 0.94526 0.93691 1.04086 1.21518 0.94923 0.98799 0.98835 1.21545 1.01435 0.92942 0.98966 1.21651 0.93366 1.00355 0.98192 1.21543 0.96674 0.97053 0.99620 1.21514 1.00574 0.93708 0.98292 1.22922 0.99559 0.96569 0.88560 0.92303 0.77298 0.93924 0.92879 0.93674 0.88403 0.89585 0.93380 0.82585 0.81862 0.80772 0.80766 0.84191 0.83526 0.83311 0.83527 0.84196 0.90763 0.94694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.02 10.81 21.45 0.23 -48.79 16 2 C 0.02 1.31 5.02 84.66 0.43 1.74 16 3 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.54 -29.26 8.10 25.60 0.21 -29.05 16 8 H 0.05 2.86 7.53 -2.91 -0.02 2.84 16 9 C 0.23 11.51 1.05 -10.65 -0.01 11.50 16 10 O -0.60 -32.12 12.94 -148.98 -1.93 -34.04 16 11 C -0.11 -5.21 5.55 31.49 0.17 -5.03 16 12 C 0.03 1.15 5.93 86.42 0.51 1.66 16 13 N -0.49 -18.21 5.34 -881.04 -4.70 -22.91 16 14 C 0.04 1.23 4.84 86.30 0.42 1.65 16 15 C -0.60 -11.56 5.92 71.98 0.43 -11.14 16 16 S 2.41 49.63 4.70 -56.49 -0.27 49.37 16 17 O -0.97 -27.14 18.10 -127.37 -2.30 -29.44 16 18 O -0.97 -27.00 18.10 -127.37 -2.31 -29.30 16 19 C -0.55 -6.48 5.94 71.24 0.42 -6.06 16 20 C -0.11 -1.94 5.14 -19.86 -0.10 -2.05 16 21 C -0.12 -2.04 9.70 22.27 0.22 -1.83 16 22 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 23 C -0.12 -1.56 10.05 22.27 0.22 -1.34 16 24 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 25 C -0.12 -2.04 9.70 22.27 0.22 -1.82 16 26 C 0.05 2.28 5.74 86.45 0.50 2.77 16 27 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 28 H 0.38 20.37 7.32 -74.06 -0.54 19.83 16 29 H 0.04 1.98 7.98 -2.39 -0.02 1.96 16 30 H 0.05 2.64 7.23 -2.39 -0.02 2.62 16 31 H 0.05 1.52 7.75 -2.38 -0.02 1.50 16 32 H 0.10 2.93 7.86 -2.39 -0.02 2.91 16 33 H 0.09 2.51 8.08 -2.39 -0.02 2.49 16 34 H 0.05 1.42 7.77 -2.39 -0.02 1.40 16 35 H 0.16 2.25 7.47 -2.39 -0.02 2.23 16 36 H 0.16 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.17 0.97 8.09 -2.39 -0.02 0.95 16 38 H 0.17 1.01 8.08 -2.39 -0.02 0.99 16 39 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 41 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 42 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 44 H 0.07 3.28 7.67 -2.39 -0.02 3.27 16 45 H 0.03 1.50 7.94 -2.39 -0.02 1.48 16 Total: -1.00 -74.76 381.12 -4.73 -79.49 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.44 Total: 33.41 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 4.07 Total: -42.35 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: -4.47 Total: -71.70 kcal Atomic # 8 Polarization: -86.25 SS G_CDS: -6.54 Total: -92.79 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 49.63 SS G_CDS: -0.27 Total: 49.37 kcal Total: -74.76 -4.73 -79.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829998507.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.993 kcal (2) G-P(sol) polarization free energy of solvation -74.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds