Wall clock time and date at job start Sat Apr 11 2020 05:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46978 * 2 1 4 4 C 1.34727 * 116.99553 * 180.02562 * 3 2 1 5 5 O 1.21476 * 120.00190 * 359.97438 * 4 3 2 6 6 C 1.47646 * 119.99862 * 179.97438 * 4 3 2 7 7 C 1.40971 * 127.55518 * 359.68000 * 6 4 3 8 8 N 1.30671 * 107.55287 * 179.88420 * 7 6 4 9 9 N 1.28342 * 111.32996 * 0.40048 * 8 7 6 10 10 C 1.46493 * 124.94058 * 179.76837 * 9 8 7 11 11 C 1.35811 * 110.11649 * 359.74028 * 9 8 7 12 12 C 1.47353 * 126.94347 * 180.02562 * 11 9 8 13 13 O 1.21505 * 119.99692 * 179.97438 * 12 11 9 14 14 O 1.34784 * 120.00070 * 359.95750 * 12 11 9 15 15 C 1.45198 * 116.99722 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46951 * 179.97438 * 15 14 12 17 17 O 1.21285 * 119.99917 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00175 * 180.02562 * 16 15 14 19 19 C 1.46507 * 120.00009 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.46954 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99759 * 180.02562 * 20 19 18 23 23 N 1.31517 * 119.99825 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00143 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47129 * 90.00242 * 24 22 20 26 26 H 1.48501 * 109.47037 * 210.00718 * 24 22 20 27 27 H 1.48499 * 109.47249 * 330.00290 * 24 22 20 28 28 H 1.08998 * 109.47020 * 300.00153 * 1 2 3 29 29 H 1.09006 * 109.46668 * 60.00004 * 1 2 3 30 30 H 1.08999 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47020 * 239.99847 * 2 1 3 32 32 H 1.08994 * 109.47099 * 119.99837 * 2 1 3 33 33 H 1.08001 * 126.21990 * 359.97438 * 7 6 4 34 34 H 1.09001 * 109.47427 * 269.96942 * 10 9 8 35 35 H 1.09002 * 109.47476 * 29.96929 * 10 9 8 36 36 H 1.09001 * 109.47298 * 149.96985 * 10 9 8 37 37 H 1.08995 * 109.47316 * 299.99662 * 15 14 12 38 38 H 1.09004 * 109.47425 * 60.00288 * 15 14 12 39 39 H 0.96997 * 120.00159 * 359.97438 * 18 16 15 40 40 H 1.08995 * 109.47177 * 300.00081 * 19 18 16 41 41 H 1.09004 * 109.46645 * 60.00144 * 19 18 16 42 42 H 0.96991 * 119.99957 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3496 1.5454 -0.0005 5 8 4.0896 0.5820 -0.0005 6 6 3.9140 2.9097 -0.0011 7 6 3.2098 4.1309 -0.0075 8 7 4.0921 5.0947 -0.0031 9 7 5.2891 4.6318 -0.0029 10 6 6.5048 5.4492 -0.0034 11 6 5.2648 3.2739 -0.0017 12 6 6.4264 2.3673 -0.0006 13 8 6.2578 1.1640 0.0010 14 8 7.6758 2.8728 -0.0017 15 6 8.7721 1.9207 -0.0011 16 6 10.0830 2.6641 -0.0031 17 8 10.0924 3.8769 -0.0053 18 7 11.2450 1.9812 -0.0034 19 6 12.5194 2.7039 -0.0060 20 6 13.6572 1.7158 -0.0052 21 1 13.4515 0.6555 -0.0027 22 6 14.9606 2.1653 -0.0067 23 7 15.9536 1.3030 -0.0066 24 14 15.3161 3.9991 -0.0104 25 1 15.4111 4.4877 1.3886 26 1 16.6002 4.2530 -0.7118 27 1 14.2196 4.7145 -0.7112 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.1362 4.2485 -0.0133 34 1 6.8066 5.6510 -1.0312 35 1 6.3097 6.3909 0.5095 36 1 7.3028 4.9138 0.5111 37 1 8.7099 1.2955 0.8896 38 1 8.7092 1.2935 -0.8904 39 1 11.2375 1.0112 -0.0020 40 1 12.5809 3.3288 -0.8969 41 1 12.5829 3.3313 0.8831 42 1 16.8705 1.6192 -0.0080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845185708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:40 Heat of formation + Delta-G solvation = -138.410003 kcal Electronic energy + Delta-G solvation = -28678.105758 eV Core-core repulsion = 24239.360969 eV Total energy + Delta-G solvation = -4438.744788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.03550 -41.65954 -41.17661 -40.37716 -37.87900 -37.40038 -36.20311 -34.80361 -34.46341 -32.92852 -32.35455 -31.10971 -29.07951 -28.53499 -26.09864 -24.73832 -23.90297 -23.55687 -22.24051 -21.74709 -21.20321 -19.68815 -19.26457 -18.83193 -18.32193 -18.26310 -17.67743 -17.58305 -17.16788 -17.14408 -16.85905 -16.24781 -16.18085 -15.91204 -15.20359 -15.04531 -14.78812 -14.64551 -14.51921 -14.35086 -14.08792 -13.86106 -13.71432 -13.60360 -13.50344 -13.07487 -12.85269 -12.70557 -12.65913 -12.42765 -12.03648 -11.93048 -11.88618 -11.67152 -11.47562 -11.42753 -10.99407 -10.92348 -10.71093 -10.44912 -10.04241 -8.39816 -6.47823 -0.68405 0.76125 0.83936 1.08976 1.33286 1.34417 1.37137 1.47650 1.50081 1.67276 1.99683 2.28091 2.34876 2.95712 3.11880 3.34886 3.53769 3.64249 3.76487 4.00327 4.00901 4.06450 4.12917 4.23865 4.26857 4.34387 4.41838 4.68770 4.74027 4.86008 4.91104 4.98695 4.99133 5.01455 5.18181 5.23692 5.31721 5.38631 5.44463 6.04536 6.27617 6.52424 6.59057 6.69724 6.77414 7.09926 7.25079 8.74815 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022041 B = 0.002130 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.043314 B =13142.521318 C =14376.208407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 O -0.348 6.348 4 C 0.529 3.471 5 O -0.501 6.501 6 C -0.186 4.186 7 C 0.072 3.928 8 N -0.275 5.275 9 N -0.238 5.238 10 C 0.071 3.929 11 C 0.031 3.969 12 C 0.524 3.476 13 O -0.461 6.461 14 O -0.335 6.335 15 C 0.058 3.942 16 C 0.509 3.491 17 O -0.570 6.570 18 N -0.697 5.697 19 C 0.233 3.767 20 C -0.550 4.550 21 H 0.059 0.941 22 C 0.025 3.975 23 N -0.932 5.932 24 Si 0.939 3.061 25 H -0.265 1.265 26 H -0.276 1.276 27 H -0.255 1.255 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.240 0.760 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.412 0.588 40 H 0.020 0.980 41 H 0.019 0.981 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.027 4.317 0.057 32.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 O -0.265 6.265 4 C 0.372 3.628 5 O -0.389 6.389 6 C -0.199 4.199 7 C -0.103 4.103 8 N -0.108 5.108 9 N -0.025 5.025 10 C -0.067 4.067 11 C -0.100 4.100 12 C 0.364 3.636 13 O -0.343 6.343 14 O -0.251 6.251 15 C -0.019 4.019 16 C 0.295 3.705 17 O -0.450 6.450 18 N -0.349 5.349 19 C 0.110 3.890 20 C -0.588 4.588 21 H 0.078 0.922 22 C -0.176 4.176 23 N -0.570 5.570 24 Si 0.763 3.237 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.179 1.179 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.256 0.744 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.248 0.752 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -31.358 5.680 0.055 31.868 hybrid contribution 1.000 -1.199 -0.009 1.561 sum -30.358 4.481 0.046 30.687 Atomic orbital electron populations 1.21821 0.89892 1.04388 1.04005 1.23318 0.97190 0.78726 1.02529 1.86501 1.21899 1.33876 1.84210 1.19975 0.81352 0.88016 0.73498 1.91024 1.60489 1.42378 1.44988 1.19589 0.90505 0.93590 1.16248 1.24524 1.01654 0.84835 0.99293 1.73256 0.89435 1.27980 1.20083 1.46029 1.07605 1.03092 1.45748 1.22851 0.80311 0.96630 1.06881 1.20527 0.92457 0.85133 1.11861 1.19811 0.82141 0.86724 0.74908 1.91102 1.85543 1.14700 1.42993 1.86563 1.14120 1.40115 1.84341 1.22835 0.81337 0.90183 1.07499 1.20349 0.85481 0.87879 0.76794 1.90659 1.88031 1.15053 1.51286 1.45866 1.05014 1.11317 1.72663 1.19178 0.80771 0.92681 0.96343 1.21299 0.90553 0.94107 1.52844 0.92247 1.25632 0.95774 1.02602 0.93547 1.69986 0.99978 1.36514 1.50554 0.85831 0.78471 0.79964 0.79475 1.18964 1.20146 1.17914 0.90925 0.90932 0.88369 0.91509 0.91506 0.74352 0.87543 0.85404 0.87529 0.85725 0.85768 0.75168 0.96210 0.96321 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 10.29 71.98 0.74 -0.35 16 2 C 0.06 0.82 6.19 71.98 0.45 1.26 16 3 O -0.35 -6.51 10.12 -56.37 -0.57 -7.08 16 4 C 0.53 13.03 7.97 70.31 0.56 13.59 16 5 O -0.50 -15.92 13.30 27.69 0.37 -15.55 16 6 C -0.19 -4.18 6.28 -19.72 -0.12 -4.30 16 7 C 0.07 1.17 11.95 85.54 1.02 2.19 16 8 N -0.28 -5.16 11.85 -56.37 -0.67 -5.82 16 9 N -0.24 -4.83 3.72 -355.16 -1.32 -6.15 16 10 C 0.07 1.15 10.78 127.77 1.38 2.53 16 11 C 0.03 0.77 6.99 41.33 0.29 1.06 16 12 C 0.52 14.47 7.94 70.22 0.56 15.03 16 13 O -0.46 -14.97 13.29 27.60 0.37 -14.61 16 14 O -0.34 -8.94 7.18 -50.56 -0.36 -9.30 16 15 C 0.06 1.48 5.96 71.24 0.42 1.90 16 16 C 0.51 17.22 7.91 87.66 0.69 17.91 16 17 O -0.57 -23.00 16.50 15.75 0.26 -22.74 16 18 N -0.70 -25.60 5.55 -466.77 -2.59 -28.19 16 19 C 0.23 10.73 4.50 85.63 0.38 11.12 16 20 C -0.55 -29.27 9.83 25.60 0.25 -29.02 16 21 H 0.06 3.34 7.84 -2.91 -0.02 3.31 16 22 C 0.02 1.36 5.47 84.65 0.46 1.83 16 23 N -0.93 -54.69 13.96 21.45 0.30 -54.39 16 24 Si 0.94 42.41 27.47 68.60 1.88 44.30 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.26 -11.20 6.54 99.48 0.65 -10.55 16 28 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.24 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.11 2.10 6.11 -2.39 -0.01 2.09 16 37 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 39 H 0.41 13.12 8.32 -92.71 -0.77 12.35 16 40 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 41 H 0.02 0.89 7.57 -2.38 -0.02 0.87 16 42 H 0.27 14.91 8.31 -92.72 -0.77 14.14 16 Total: -1.00 -75.34 372.40 5.00 -70.34 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.25 Total: 14.46 kcal Atomic # 6 Polarization: 27.65 SS G_CDS: 7.09 Total: 34.74 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -4.28 Total: -94.56 kcal Atomic # 8 Polarization: -69.34 SS G_CDS: 0.06 Total: -69.27 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.88 Total: 44.30 kcal Total: -75.34 5.00 -70.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845185708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.071 kcal (2) G-P(sol) polarization free energy of solvation -75.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds