Wall clock time and date at job start Sat Apr 11 2020 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47127 * 2 1 4 4 N 1.46504 * 109.47383 * 119.99719 * 2 1 3 5 5 C 1.34776 * 120.00057 * 275.00462 * 4 2 1 6 6 S 1.71192 * 119.99991 * 4.96101 * 5 4 2 7 7 N 1.34774 * 119.99904 * 184.96279 * 5 4 2 8 8 C 1.47087 * 120.88126 * 354.81232 * 7 5 4 9 9 C 1.53239 * 108.52092 * 231.16306 * 8 7 5 10 10 N 1.46903 * 109.33719 * 306.16915 * 9 8 7 11 11 C 1.46901 * 110.99569 * 187.25264 * 10 9 8 12 12 C 1.50697 * 109.46987 * 170.00110 * 11 10 9 13 13 H 1.07997 * 120.00136 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00181 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99810 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00171 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47356 * 59.99411 * 16 14 12 18 18 H 1.48499 * 109.47235 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46659 * 299.99503 * 16 14 12 20 20 C 1.46898 * 111.26836 * 63.10927 * 10 9 8 21 21 C 1.47076 * 120.88347 * 174.78884 * 7 5 4 22 22 C 1.50699 * 109.47380 * 239.99889 * 2 1 3 23 23 C 1.33396 * 125.20079 * 99.99738 * 22 2 1 24 24 C 1.38427 * 114.91676 * 179.97438 * 23 22 2 25 25 C 1.33386 * 114.92381 * 359.97438 * 24 23 22 26 26 S 1.75876 * 125.20481 * 279.69573 * 22 2 1 27 27 H 1.09001 * 109.46624 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47147 * 299.99497 * 1 2 3 29 29 H 1.08992 * 109.47352 * 60.00485 * 1 2 3 30 30 H 0.96994 * 119.99690 * 95.00210 * 4 2 1 31 31 H 1.09001 * 109.62380 * 111.45366 * 8 7 5 32 32 H 1.08995 * 109.62669 * 350.87655 * 8 7 5 33 33 H 1.08997 * 109.49031 * 186.21061 * 9 8 7 34 34 H 1.09002 * 109.49261 * 66.12716 * 9 8 7 35 35 H 1.09003 * 109.47145 * 290.00178 * 11 10 9 36 36 H 1.08995 * 109.47053 * 50.00325 * 11 10 9 37 37 H 0.97005 * 119.99882 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.49609 * 56.85064 * 20 10 9 39 39 H 1.08999 * 109.49309 * 176.90436 * 20 10 9 40 40 H 1.09000 * 109.62907 * 9.12609 * 21 7 5 41 41 H 1.08999 * 109.62906 * 248.55144 * 21 7 5 42 42 H 1.07995 * 122.53980 * 0.02562 * 23 22 2 43 43 H 1.08003 * 122.53094 * 180.02562 * 24 23 22 44 44 H 1.08001 * 125.20179 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 16 1.6212 1.6072 2.4678 7 7 2.6897 -0.6254 3.4310 8 6 3.0439 -2.0525 3.3925 9 6 2.4224 -2.7414 4.6121 10 7 2.8314 -2.0325 5.8321 11 6 2.3992 -2.7595 7.0332 12 6 3.0396 -2.1439 8.2505 13 1 3.7010 -1.2970 8.1428 14 6 2.7810 -2.6618 9.5019 15 7 1.9750 -3.6927 9.6332 16 14 3.5742 -1.8982 11.0110 17 1 3.1635 -0.4753 11.1197 18 1 3.1374 -2.6331 12.2252 19 1 5.0518 -1.9789 10.8877 20 6 2.3265 -0.6531 5.8415 21 6 2.9441 0.1213 4.6723 22 6 2.0324 -0.7104 -1.2304 23 6 2.4671 -0.1117 -2.3404 24 6 2.8813 -0.9717 -3.3429 25 6 2.7833 -2.2686 -3.0470 26 16 2.1422 -2.4555 -1.4198 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 2.2491 -1.6316 1.1526 31 1 4.1280 -2.1616 3.4232 32 1 2.6535 -2.5021 2.4795 33 1 2.7649 -3.7750 4.6598 34 1 1.3359 -2.7213 4.5268 35 1 1.3146 -2.6996 7.1236 36 1 2.7000 -3.8041 6.9535 37 1 1.7928 -4.0569 10.5136 38 1 1.2413 -0.6622 5.7390 39 1 2.5990 -0.1724 6.7811 40 1 2.4877 1.1090 4.6055 41 1 4.0185 0.2211 4.8259 42 1 2.4947 0.9625 -2.4483 43 1 3.2561 -0.6191 -4.2925 44 1 3.0585 -3.0798 -3.7048 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865268539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:48 Heat of formation + Delta-G solvation = 69.555789 kcal Electronic energy + Delta-G solvation = -24616.395067 eV Core-core repulsion = 21208.007189 eV Total energy + Delta-G solvation = -3408.387878 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.113 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.10518 -38.67956 -37.33444 -35.25955 -32.75275 -31.80234 -31.08971 -28.89594 -28.36258 -26.15341 -24.85244 -23.85749 -23.28120 -22.21494 -21.57345 -20.22204 -19.48583 -18.58063 -17.62067 -16.72993 -16.43053 -15.87977 -15.34680 -15.16495 -14.85352 -14.60379 -14.50297 -14.32968 -13.92146 -13.80968 -13.53340 -13.15119 -13.09026 -12.62381 -12.53114 -12.23965 -12.11561 -11.91107 -11.61183 -11.42921 -11.37039 -11.13298 -11.08040 -10.88397 -10.79340 -10.66938 -10.59015 -9.96304 -9.39720 -9.17988 -8.94235 -8.91312 -8.52455 -7.71274 -7.47408 -7.29681 -6.11728 -4.14202 0.50903 1.11955 1.43630 1.52250 1.93427 2.29595 2.62978 3.12553 3.29597 3.33917 3.36517 4.10755 4.31900 4.51058 4.64580 4.82146 4.86651 4.99492 5.05690 5.06365 5.13105 5.15764 5.25121 5.31645 5.45335 5.58296 5.60438 5.64666 5.73908 5.82035 5.91083 5.93529 5.96376 6.06666 6.07598 6.34507 6.38215 6.46851 6.79923 7.09229 7.13931 7.18727 7.64648 7.87785 8.00771 8.36491 8.92310 9.50860 10.99003 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021811 B = 0.002453 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.437777 B =11411.878168 C =12186.451725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.222 3.778 3 H 0.129 0.871 4 N -0.692 5.692 5 C 0.571 3.429 6 S -0.660 6.660 7 N -0.556 5.556 8 C 0.100 3.900 9 C 0.042 3.958 10 N -0.536 5.536 11 C 0.195 3.805 12 C -0.512 4.512 13 H 0.064 0.936 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.051 3.949 21 C 0.105 3.895 22 C -0.190 4.190 23 C -0.120 4.120 24 C -0.133 4.133 25 C -0.206 4.206 26 S 0.093 5.907 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.393 0.607 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.030 0.970 35 H -0.007 1.007 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.030 0.970 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.084 0.916 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 1.857 -25.902 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.116 3.884 3 H 0.147 0.853 4 N -0.326 5.326 5 C 0.210 3.790 6 S -0.531 6.531 7 N -0.263 5.263 8 C -0.026 4.026 9 C -0.087 4.087 10 N -0.261 5.261 11 C 0.070 3.930 12 C -0.551 4.551 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.078 4.078 21 C -0.017 4.017 22 C -0.308 4.308 23 C -0.151 4.151 24 C -0.163 4.163 25 C -0.342 4.342 26 S 0.357 5.643 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.233 0.767 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.011 0.989 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.123 0.877 40 H 0.143 0.857 41 H 0.102 0.898 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.610 1.519 -24.757 24.811 hybrid contribution 0.223 -0.186 -0.248 0.382 sum 0.833 1.333 -25.006 25.055 Atomic orbital electron populations 1.22231 0.92750 1.02467 1.04500 1.19688 0.95108 0.96806 0.76846 0.85331 1.45234 1.66276 1.12970 1.08110 1.22205 0.81303 0.93985 0.81462 1.93305 1.68957 0.98726 1.92119 1.47552 1.55823 1.10662 1.12280 1.22197 1.02008 0.79468 0.98936 1.22353 0.97319 0.98527 0.90551 1.62165 1.59702 1.01832 1.02394 1.19725 0.94085 0.93858 0.85285 1.21069 1.27995 1.15724 0.90297 0.91750 1.24989 0.95236 0.95045 0.99205 1.69944 1.36095 1.23720 1.23911 0.86533 0.79731 0.79300 0.81729 1.20105 1.21342 1.20108 1.22379 0.96623 0.90550 0.98212 1.22613 1.02166 0.97572 0.79382 1.24708 1.09118 0.96399 1.00588 1.20149 1.00638 1.01733 0.92572 1.20212 1.02972 0.92163 1.00969 1.25656 1.08435 1.00823 0.99279 1.84304 1.63243 1.04175 1.12628 0.92743 0.89433 0.90839 0.76731 0.89018 0.91113 0.89407 0.95178 0.98945 0.95024 0.92747 0.95205 0.87702 0.85749 0.89819 0.83643 0.83870 0.81649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.39 37.16 0.35 -1.20 16 2 C 0.22 2.20 2.75 -69.08 -0.19 2.01 16 3 H 0.13 1.45 6.94 -51.93 -0.36 1.09 16 4 N -0.69 -7.57 4.97 -56.65 -0.28 -7.85 16 5 C 0.57 7.96 7.68 -86.92 -0.67 7.29 16 6 S -0.66 -11.19 25.62 -107.50 -2.75 -13.95 16 7 N -0.56 -7.77 3.01 -174.49 -0.53 -8.30 16 8 C 0.10 1.22 6.54 -3.60 -0.02 1.19 16 9 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 10 N -0.54 -10.47 4.62 -235.76 -1.09 -11.56 16 11 C 0.20 4.77 4.72 -4.98 -0.02 4.75 16 12 C -0.51 -13.68 8.41 -34.44 -0.29 -13.97 16 13 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 16 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.05 0.94 5.46 -3.70 -0.02 0.92 16 21 C 0.10 1.62 6.51 -3.60 -0.02 1.60 16 22 C -0.19 -1.62 5.45 -36.00 -0.20 -1.81 16 23 C -0.12 -0.91 10.04 -41.20 -0.41 -1.33 16 24 C -0.13 -0.88 10.18 -41.21 -0.42 -1.30 16 25 C -0.21 -1.37 11.23 29.04 0.33 -1.04 16 26 S 0.09 0.71 22.30 -107.50 -2.40 -1.69 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.05 7.18 -51.93 -0.37 0.68 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.39 3.74 5.20 -40.82 -0.21 3.52 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.67 5.74 -51.93 -0.30 0.37 16 33 H 0.09 1.30 7.99 -51.93 -0.41 0.88 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H -0.01 -0.19 8.12 -51.93 -0.42 -0.62 16 36 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 2.06 6.67 -51.93 -0.35 1.72 16 40 H 0.12 2.02 5.99 -50.65 -0.30 1.71 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 44 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -31.01 374.36 -13.86 -44.87 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.46 Total: 2.74 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -1.71 Total: -0.78 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -1.16 Total: -52.87 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -10.48 SS G_CDS: -5.15 Total: -15.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.01 -13.86 -44.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865268539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.426 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds