Wall clock time and date at job start Sat Apr 11 2020 05:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47127 * 2 1 4 4 N 1.46504 * 109.47383 * 119.99719 * 2 1 3 5 5 C 1.34776 * 120.00057 * 275.00462 * 4 2 1 6 6 S 1.71192 * 119.99991 * 4.96101 * 5 4 2 7 7 N 1.34774 * 119.99904 * 184.96279 * 5 4 2 8 8 C 1.47087 * 120.88126 * 354.81232 * 7 5 4 9 9 C 1.53239 * 108.52092 * 231.16306 * 8 7 5 10 10 N 1.46903 * 109.33719 * 306.16915 * 9 8 7 11 11 C 1.46901 * 110.99569 * 187.25264 * 10 9 8 12 12 C 1.50697 * 109.46987 * 170.00110 * 11 10 9 13 13 H 1.07997 * 120.00136 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00181 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99810 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00171 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47356 * 59.99411 * 16 14 12 18 18 H 1.48499 * 109.47235 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46659 * 299.99503 * 16 14 12 20 20 C 1.46898 * 111.26836 * 63.10927 * 10 9 8 21 21 C 1.47076 * 120.88347 * 174.78884 * 7 5 4 22 22 C 1.50699 * 109.47380 * 239.99889 * 2 1 3 23 23 C 1.33396 * 125.20079 * 99.99738 * 22 2 1 24 24 C 1.38427 * 114.91676 * 179.97438 * 23 22 2 25 25 C 1.33386 * 114.92381 * 359.97438 * 24 23 22 26 26 S 1.75876 * 125.20481 * 279.69573 * 22 2 1 27 27 H 1.09001 * 109.46624 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47147 * 299.99497 * 1 2 3 29 29 H 1.08992 * 109.47352 * 60.00485 * 1 2 3 30 30 H 0.96994 * 119.99690 * 95.00210 * 4 2 1 31 31 H 1.09001 * 109.62380 * 111.45366 * 8 7 5 32 32 H 1.08995 * 109.62669 * 350.87655 * 8 7 5 33 33 H 1.08997 * 109.49031 * 186.21061 * 9 8 7 34 34 H 1.09002 * 109.49261 * 66.12716 * 9 8 7 35 35 H 1.09003 * 109.47145 * 290.00178 * 11 10 9 36 36 H 1.08995 * 109.47053 * 50.00325 * 11 10 9 37 37 H 0.97005 * 119.99882 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.49609 * 56.85064 * 20 10 9 39 39 H 1.08999 * 109.49309 * 176.90436 * 20 10 9 40 40 H 1.09000 * 109.62907 * 9.12609 * 21 7 5 41 41 H 1.08999 * 109.62906 * 248.55144 * 21 7 5 42 42 H 1.07995 * 122.53980 * 0.02562 * 23 22 2 43 43 H 1.08003 * 122.53094 * 180.02562 * 24 23 22 44 44 H 1.08001 * 125.20179 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 16 1.6212 1.6072 2.4678 7 7 2.6897 -0.6254 3.4310 8 6 3.0439 -2.0525 3.3925 9 6 2.4224 -2.7414 4.6121 10 7 2.8314 -2.0325 5.8321 11 6 2.3992 -2.7595 7.0332 12 6 3.0396 -2.1439 8.2505 13 1 3.7010 -1.2970 8.1428 14 6 2.7810 -2.6618 9.5019 15 7 1.9750 -3.6927 9.6332 16 14 3.5742 -1.8982 11.0110 17 1 3.1635 -0.4753 11.1197 18 1 3.1374 -2.6331 12.2252 19 1 5.0518 -1.9789 10.8877 20 6 2.3265 -0.6531 5.8415 21 6 2.9441 0.1213 4.6723 22 6 2.0324 -0.7104 -1.2304 23 6 2.4671 -0.1117 -2.3404 24 6 2.8813 -0.9717 -3.3429 25 6 2.7833 -2.2686 -3.0470 26 16 2.1422 -2.4555 -1.4198 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 2.2491 -1.6316 1.1526 31 1 4.1280 -2.1616 3.4232 32 1 2.6535 -2.5021 2.4795 33 1 2.7649 -3.7750 4.6598 34 1 1.3359 -2.7213 4.5268 35 1 1.3146 -2.6996 7.1236 36 1 2.7000 -3.8041 6.9535 37 1 1.7928 -4.0569 10.5136 38 1 1.2413 -0.6622 5.7390 39 1 2.5990 -0.1724 6.7811 40 1 2.4877 1.1090 4.6055 41 1 4.0185 0.2211 4.8259 42 1 2.4947 0.9625 -2.4483 43 1 3.2561 -0.6191 -4.2925 44 1 3.0585 -3.0798 -3.7048 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865268539.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:47 Heat of formation + Delta-G solvation = 51.813078 kcal Electronic energy + Delta-G solvation = -24617.164449 eV Core-core repulsion = 21208.007189 eV Total energy + Delta-G solvation = -3409.157260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.26168 -39.54033 -38.31560 -36.55086 -34.65860 -32.88233 -32.33891 -30.08206 -29.39558 -27.76827 -25.64888 -25.20644 -24.52487 -23.32811 -22.93634 -21.35672 -20.29971 -19.52650 -18.64953 -18.42999 -17.69087 -16.75093 -16.46387 -16.36945 -16.18537 -15.99809 -15.74114 -15.45940 -15.34529 -15.14665 -14.48229 -14.14874 -13.87290 -13.74674 -13.61923 -13.22572 -13.15064 -13.02198 -12.83946 -12.76726 -12.75140 -12.51791 -12.45903 -12.26159 -12.22618 -12.13685 -11.76531 -11.67986 -11.34206 -10.62196 -10.10510 -9.69730 -9.47141 -9.21416 -8.94609 -8.62757 -8.21958 -6.31633 -0.05841 0.28663 0.54374 0.77681 0.98585 1.42842 1.43571 1.45238 1.52872 1.78855 2.13515 2.39873 3.06427 3.13810 3.41143 3.61710 3.84249 3.91449 4.07640 4.11519 4.20381 4.25034 4.26657 4.36105 4.52630 4.61045 4.63640 4.67032 4.70711 4.79975 4.87129 4.90651 4.99991 5.14062 5.16291 5.22814 5.23589 5.29020 5.37302 5.49787 5.61407 5.64908 5.99585 6.09880 6.18596 6.49981 6.83235 7.38295 8.88889 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021811 B = 0.002453 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.437777 B =11411.878168 C =12186.451725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.226 3.774 3 H 0.115 0.885 4 N -0.672 5.672 5 C 0.586 3.414 6 S -0.719 6.719 7 N -0.559 5.559 8 C 0.108 3.892 9 C 0.040 3.960 10 N -0.536 5.536 11 C 0.210 3.790 12 C -0.524 4.524 13 H 0.067 0.933 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.058 3.942 21 C 0.121 3.879 22 C -0.209 4.209 23 C -0.117 4.117 24 C -0.141 4.141 25 C -0.201 4.201 26 S 0.086 5.914 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.404 0.596 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.021 0.979 35 H -0.041 1.041 36 H 0.013 0.987 37 H 0.264 0.736 38 H 0.012 0.988 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.155 0.845 43 H 0.166 0.834 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.310 1.497 -28.054 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.120 3.880 3 H 0.133 0.867 4 N -0.306 5.306 5 C 0.223 3.777 6 S -0.591 6.591 7 N -0.266 5.266 8 C -0.017 4.017 9 C -0.090 4.090 10 N -0.261 5.261 11 C 0.084 3.916 12 C -0.562 4.562 13 H 0.085 0.915 14 C -0.195 4.195 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.071 4.071 21 C -0.002 4.002 22 C -0.327 4.327 23 C -0.149 4.149 24 C -0.170 4.170 25 C -0.336 4.336 26 S 0.349 5.651 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.245 0.755 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.039 0.961 35 H -0.023 1.023 36 H 0.031 0.969 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.114 0.886 42 H 0.172 0.828 43 H 0.183 0.817 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.102 1.145 -26.966 27.072 hybrid contribution -0.264 -0.145 0.274 0.407 sum 1.839 1.001 -26.692 26.774 Atomic orbital electron populations 1.22152 0.92619 1.02597 1.03945 1.19630 0.95127 0.96283 0.76970 0.86745 1.45272 1.64567 1.13308 1.07411 1.21794 0.80798 0.92945 0.82188 1.93446 1.71178 1.01712 1.92768 1.47495 1.55934 1.11323 1.11829 1.22274 1.02906 0.77955 0.98523 1.22476 0.97158 0.99283 0.90062 1.62065 1.59612 1.02177 1.02267 1.19359 0.91744 0.93278 0.87211 1.21424 1.27798 1.15684 0.91327 0.91478 1.25875 0.95741 0.95463 1.02414 1.70069 1.37562 1.25179 1.24621 0.85475 0.79069 0.78534 0.77811 1.19374 1.21154 1.19117 1.22270 0.95705 0.90155 0.98951 1.22323 1.02371 0.96672 0.78850 1.24498 1.10919 0.97026 1.00235 1.20416 0.99499 1.02546 0.92428 1.20464 1.02908 0.92034 1.01633 1.26006 1.07344 1.01588 0.98710 1.84291 1.63607 1.03328 1.13880 0.92181 0.91971 0.89392 0.75492 0.87321 0.87652 0.88324 0.96107 1.02312 0.96909 0.92710 0.96980 0.89453 0.86403 0.88635 0.82776 0.81706 0.79464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.39 71.98 0.68 -2.19 16 2 C 0.23 4.20 2.75 44.24 0.12 4.32 16 3 H 0.11 2.53 6.94 -2.39 -0.02 2.51 16 4 N -0.67 -13.55 4.97 -333.16 -1.66 -15.21 16 5 C 0.59 15.71 7.68 179.06 1.38 17.08 16 6 S -0.72 -24.59 25.62 -56.49 -1.45 -26.04 16 7 N -0.56 -14.83 3.01 -705.95 -2.12 -16.95 16 8 C 0.11 2.37 6.54 86.35 0.56 2.93 16 9 C 0.04 1.19 5.62 86.38 0.49 1.68 16 10 N -0.54 -21.07 4.62 -899.82 -4.16 -25.23 16 11 C 0.21 10.60 4.72 85.56 0.40 11.00 16 12 C -0.52 -28.43 8.41 25.60 0.22 -28.22 16 13 H 0.07 3.53 7.13 -2.91 -0.02 3.51 16 14 C 0.00 0.19 5.46 84.65 0.46 0.65 16 15 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 16 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 C 0.06 2.17 5.46 86.38 0.47 2.64 16 21 C 0.12 3.67 6.51 86.35 0.56 4.24 16 22 C -0.21 -3.13 5.45 24.59 0.13 -3.00 16 23 C -0.12 -1.51 10.04 21.22 0.21 -1.30 16 24 C -0.14 -1.44 10.18 21.22 0.22 -1.22 16 25 C -0.20 -2.03 11.23 66.72 0.75 -1.28 16 26 S 0.09 1.09 22.30 -56.49 -1.26 -0.17 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.50 7.18 -2.39 -0.02 1.48 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.40 6.58 5.20 -92.71 -0.48 6.10 16 31 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.11 1.61 5.74 -2.39 -0.01 1.60 16 33 H 0.10 2.79 7.99 -2.39 -0.02 2.77 16 34 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 35 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 36 H 0.01 0.69 7.97 -2.39 -0.02 0.67 16 37 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 39 H 0.09 3.54 6.67 -2.39 -0.02 3.52 16 40 H 0.12 3.84 5.99 -3.20 -0.02 3.82 16 41 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 44 H 0.19 0.99 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -68.72 374.36 -1.17 -69.88 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.52 Total: 15.74 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.65 Total: 7.34 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -7.65 Total: -112.08 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -23.50 SS G_CDS: -2.71 Total: -26.21 kcal Total: -68.72 -1.17 -69.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865268539.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.697 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds