Wall clock time and date at job start Sat Apr 11 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.46903 * 2 1 4 4 N 1.46497 * 109.46806 * 239.99912 * 2 1 3 5 5 C 1.34772 * 120.00208 * 85.00616 * 4 2 1 6 6 S 1.71197 * 119.99846 * 355.02372 * 5 4 2 7 7 N 1.34770 * 120.00147 * 175.02965 * 5 4 2 8 8 C 1.47088 * 120.88522 * 4.92326 * 7 5 4 9 9 C 1.53700 * 108.27826 * 128.75255 * 8 7 5 10 10 N 1.46902 * 109.25232 * 54.08616 * 9 8 7 11 11 C 1.46904 * 110.99479 * 172.60853 * 10 9 8 12 12 C 1.50703 * 109.46940 * 294.29753 * 11 10 9 13 13 H 1.08004 * 120.00202 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99859 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00494 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99983 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47163 * 60.00118 * 16 14 12 18 18 H 1.48498 * 109.47252 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47132 * 300.00505 * 16 14 12 20 20 C 1.46894 * 111.27206 * 296.75152 * 10 9 8 21 21 C 1.47083 * 120.88253 * 185.19950 * 7 5 4 22 22 C 1.50696 * 109.46720 * 119.99891 * 2 1 3 23 23 C 1.33389 * 125.20346 * 259.99825 * 22 2 1 24 24 C 1.38432 * 114.92040 * 180.25312 * 23 22 2 25 25 C 1.33392 * 114.91819 * 359.49071 * 24 23 22 26 26 S 1.75877 * 109.59628 * 0.47988 * 25 24 23 27 27 H 1.09002 * 109.47589 * 300.00437 * 1 2 3 28 28 H 1.08997 * 109.47112 * 60.00258 * 1 2 3 29 29 H 1.08997 * 109.47359 * 180.02562 * 1 2 3 30 30 H 0.97009 * 119.99852 * 264.99548 * 4 2 1 31 31 H 1.08992 * 109.62655 * 248.52852 * 8 7 5 32 32 H 1.09004 * 109.62245 * 9.10430 * 8 7 5 33 33 H 1.08997 * 109.64543 * 294.08256 * 9 8 7 34 34 H 1.08996 * 109.43945 * 173.96579 * 9 8 7 35 35 H 1.08992 * 109.47658 * 54.29738 * 11 10 9 36 36 H 1.09006 * 109.46850 * 174.30558 * 11 10 9 37 37 H 0.96998 * 120.00766 * 179.97438 * 15 14 12 38 38 H 1.09005 * 109.49380 * 303.15109 * 20 10 9 39 39 H 1.08995 * 109.49539 * 183.06376 * 20 10 9 40 40 H 1.08997 * 109.62837 * 350.90193 * 21 7 5 41 41 H 1.09005 * 109.62804 * 111.48072 * 21 7 5 42 42 H 1.07995 * 122.53829 * 359.97438 * 23 22 2 43 43 H 1.07997 * 122.53726 * 179.72273 * 24 23 22 44 44 H 1.07996 * 125.19913 * 180.20630 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 16 1.6211 1.6071 -2.4678 7 7 2.6897 -0.6256 -3.4309 8 6 3.0491 -2.0514 -3.3905 9 6 2.4214 -2.7414 -4.6121 10 7 2.8304 -2.0327 -5.8321 11 6 2.3977 -2.7595 -7.0331 12 6 3.1264 -4.0762 -7.1132 13 1 3.8393 -4.3463 -6.3482 14 6 2.8822 -4.9365 -8.1626 15 7 2.0138 -4.6080 -9.0939 16 14 3.7849 -6.5690 -8.2615 17 1 3.4777 -7.3785 -7.0550 18 1 3.3476 -7.3037 -9.4757 19 1 5.2476 -6.3223 -8.3327 20 6 2.3260 -0.6531 -5.8414 21 6 2.9440 0.1211 -4.6723 22 6 2.0322 -0.7104 1.2305 23 6 2.4670 -0.1118 2.3404 24 6 2.8856 -0.9717 3.3412 25 6 2.7808 -2.2687 3.0480 26 16 2.1343 -2.4558 1.4230 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 2.2490 -1.6319 -1.1525 31 1 4.1334 -2.1567 -3.4236 32 1 2.6625 -2.5006 -2.4757 33 1 1.3350 -2.7211 -4.5264 34 1 2.7632 -3.7753 -4.6601 35 1 1.3243 -2.9410 -6.9811 36 1 2.6233 -2.1650 -7.9185 37 1 1.8422 -5.2130 -9.8324 38 1 1.2408 -0.6619 -5.7387 39 1 2.5990 -0.1723 -6.7807 40 1 2.4880 1.1089 -4.6053 41 1 4.0185 0.2205 -4.8262 42 1 2.4947 0.9624 2.4482 43 1 3.2646 -0.6191 4.2890 44 1 3.0554 -3.0799 3.7059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865268540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:51 Heat of formation + Delta-G solvation = 68.970580 kcal Electronic energy + Delta-G solvation = -24676.458345 eV Core-core repulsion = 21268.045090 eV Total energy + Delta-G solvation = -3408.413255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.113 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09212 -38.66278 -37.32144 -35.26176 -32.78687 -31.75540 -31.06698 -28.88444 -28.43758 -26.02017 -24.78245 -24.18343 -23.11242 -22.10311 -21.66058 -20.21928 -19.46341 -18.57605 -17.61272 -16.75648 -16.41309 -15.85786 -15.33809 -15.14806 -14.81860 -14.60204 -14.56458 -14.33940 -13.91716 -13.82472 -13.53710 -13.13125 -13.07424 -12.60196 -12.51663 -12.18665 -12.16219 -11.85930 -11.55562 -11.44254 -11.34825 -11.13046 -11.05989 -11.04005 -10.82337 -10.69679 -10.61095 -9.98913 -9.41028 -9.16306 -8.93296 -8.89494 -8.55540 -7.72284 -7.47643 -7.32087 -6.14158 -4.17333 0.53025 1.14415 1.43793 1.54795 1.93161 2.31045 2.62635 3.13955 3.24457 3.30148 3.31565 4.12365 4.30087 4.53024 4.66797 4.85973 4.88016 5.01186 5.07593 5.10939 5.16187 5.17600 5.22126 5.35227 5.41840 5.56000 5.59130 5.61486 5.72982 5.83751 5.91285 5.99848 6.08035 6.09827 6.17591 6.25564 6.26956 6.37947 6.78762 7.08480 7.14570 7.17994 7.62233 7.87323 7.99247 8.34709 8.88912 9.47622 10.96425 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.002818 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.093898 B = 9934.388565 C =11486.521911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.222 3.778 3 H 0.129 0.871 4 N -0.691 5.691 5 C 0.572 3.428 6 S -0.663 6.663 7 N -0.556 5.556 8 C 0.096 3.904 9 C 0.053 3.947 10 N -0.536 5.536 11 C 0.194 3.806 12 C -0.514 4.514 13 H 0.063 0.937 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.899 3.101 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.041 3.959 21 C 0.108 3.892 22 C -0.191 4.191 23 C -0.120 4.120 24 C -0.133 4.133 25 C -0.206 4.206 26 S 0.096 5.904 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.394 0.606 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.028 0.972 34 H 0.103 0.897 35 H -0.007 1.007 36 H 0.035 0.965 37 H 0.263 0.737 38 H 0.032 0.968 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.084 0.916 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.639 5.582 23.650 24.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.116 3.884 3 H 0.147 0.853 4 N -0.325 5.325 5 C 0.211 3.789 6 S -0.535 6.535 7 N -0.263 5.263 8 C -0.029 4.029 9 C -0.076 4.076 10 N -0.261 5.261 11 C 0.070 3.930 12 C -0.553 4.553 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.088 4.088 21 C -0.014 4.014 22 C -0.309 4.309 23 C -0.151 4.151 24 C -0.164 4.164 25 C -0.342 4.342 26 S 0.359 5.641 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.234 0.766 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.121 0.879 35 H 0.010 0.990 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.108 0.892 40 H 0.142 0.858 41 H 0.102 0.898 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.413 5.301 22.471 23.092 hybrid contribution 0.297 -1.337 0.919 1.649 sum 0.710 3.964 23.390 23.734 Atomic orbital electron populations 1.22233 0.92752 1.02504 1.04467 1.19684 0.95110 0.96775 0.76863 0.85347 1.45244 1.66120 1.13039 1.08092 1.22182 0.81306 0.93903 0.81491 1.93277 1.69250 0.98810 1.92156 1.47534 1.55756 1.10951 1.12089 1.22403 1.02056 0.79074 0.99394 1.22375 0.96893 0.99507 0.88840 1.62142 1.59621 1.00817 1.03524 1.19733 0.94112 0.93327 0.85842 1.21067 1.23804 1.01459 1.08968 0.91916 1.24989 0.95297 0.98604 0.95551 1.69936 1.34053 1.37173 1.12270 0.86555 0.80150 0.83266 0.77406 1.20280 1.21275 1.20090 1.22437 0.97139 0.91441 0.97827 1.22506 1.02055 0.97389 0.79486 1.24709 1.09193 0.96459 1.00558 1.20140 1.00661 1.01706 0.92582 1.20210 1.03013 0.92161 1.00996 1.25664 1.08324 1.00823 0.99385 1.84357 1.63058 1.04061 1.12626 0.90848 0.89454 0.92705 0.76617 0.88991 0.91100 0.95334 0.87871 0.98962 0.94739 0.92684 0.95003 0.89247 0.85753 0.89825 0.83667 0.83884 0.81649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.39 37.16 0.35 -1.23 16 2 C 0.22 2.24 2.75 -69.09 -0.19 2.05 16 3 H 0.13 1.46 6.94 -51.93 -0.36 1.10 16 4 N -0.69 -7.74 4.97 -56.66 -0.28 -8.02 16 5 C 0.57 7.98 7.68 -86.93 -0.67 7.31 16 6 S -0.66 -11.08 25.62 -107.50 -2.75 -13.83 16 7 N -0.56 -7.78 3.00 -174.19 -0.52 -8.30 16 8 C 0.10 1.25 6.57 -3.36 -0.02 1.23 16 9 C 0.05 0.90 5.47 -3.46 -0.02 0.89 16 10 N -0.54 -10.47 4.62 -235.46 -1.09 -11.55 16 11 C 0.19 4.75 4.72 -4.97 -0.02 4.73 16 12 C -0.51 -13.54 8.41 -34.44 -0.29 -13.83 16 13 H 0.06 1.60 7.13 -52.48 -0.37 1.23 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 16 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 20 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 21 C 0.11 1.59 6.51 -3.60 -0.02 1.56 16 22 C -0.19 -1.68 5.45 -36.00 -0.20 -1.87 16 23 C -0.12 -0.94 10.04 -41.21 -0.41 -1.35 16 24 C -0.13 -0.92 10.18 -41.20 -0.42 -1.34 16 25 C -0.21 -1.44 11.23 29.04 0.33 -1.11 16 26 S 0.10 0.77 22.31 -107.50 -2.40 -1.63 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.05 7.18 -51.93 -0.37 0.68 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.39 3.94 5.21 -40.82 -0.21 3.72 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.74 5.73 -51.93 -0.30 0.44 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.10 1.85 6.67 -51.93 -0.35 1.50 16 35 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 36 H 0.03 0.91 7.97 -51.93 -0.41 0.49 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.47 7.99 -51.93 -0.41 1.06 16 40 H 0.12 1.90 5.99 -50.64 -0.30 1.59 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -30.65 374.41 -13.85 -44.50 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.46 Total: 3.33 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.71 Total: -0.83 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -1.16 Total: -52.83 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -10.30 SS G_CDS: -5.15 Total: -15.46 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.65 -13.85 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865268540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.473 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds