Wall clock time and date at job start Sat Apr 11 2020 05:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.46903 * 2 1 4 4 N 1.46497 * 109.46806 * 239.99912 * 2 1 3 5 5 C 1.34772 * 120.00208 * 85.00616 * 4 2 1 6 6 S 1.71197 * 119.99846 * 355.02372 * 5 4 2 7 7 N 1.34770 * 120.00147 * 175.02965 * 5 4 2 8 8 C 1.47088 * 120.88522 * 4.92326 * 7 5 4 9 9 C 1.53700 * 108.27826 * 128.75255 * 8 7 5 10 10 N 1.46902 * 109.25232 * 54.08616 * 9 8 7 11 11 C 1.46904 * 110.99479 * 172.60853 * 10 9 8 12 12 C 1.50703 * 109.46940 * 294.29753 * 11 10 9 13 13 H 1.08004 * 120.00202 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99859 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00494 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99983 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47163 * 60.00118 * 16 14 12 18 18 H 1.48498 * 109.47252 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47132 * 300.00505 * 16 14 12 20 20 C 1.46894 * 111.27206 * 296.75152 * 10 9 8 21 21 C 1.47083 * 120.88253 * 185.19950 * 7 5 4 22 22 C 1.50696 * 109.46720 * 119.99891 * 2 1 3 23 23 C 1.33389 * 125.20346 * 259.99825 * 22 2 1 24 24 C 1.38432 * 114.92040 * 180.25312 * 23 22 2 25 25 C 1.33392 * 114.91819 * 359.49071 * 24 23 22 26 26 S 1.75877 * 109.59628 * 0.47988 * 25 24 23 27 27 H 1.09002 * 109.47589 * 300.00437 * 1 2 3 28 28 H 1.08997 * 109.47112 * 60.00258 * 1 2 3 29 29 H 1.08997 * 109.47359 * 180.02562 * 1 2 3 30 30 H 0.97009 * 119.99852 * 264.99548 * 4 2 1 31 31 H 1.08992 * 109.62655 * 248.52852 * 8 7 5 32 32 H 1.09004 * 109.62245 * 9.10430 * 8 7 5 33 33 H 1.08997 * 109.64543 * 294.08256 * 9 8 7 34 34 H 1.08996 * 109.43945 * 173.96579 * 9 8 7 35 35 H 1.08992 * 109.47658 * 54.29738 * 11 10 9 36 36 H 1.09006 * 109.46850 * 174.30558 * 11 10 9 37 37 H 0.96998 * 120.00766 * 179.97438 * 15 14 12 38 38 H 1.09005 * 109.49380 * 303.15109 * 20 10 9 39 39 H 1.08995 * 109.49539 * 183.06376 * 20 10 9 40 40 H 1.08997 * 109.62837 * 350.90193 * 21 7 5 41 41 H 1.09005 * 109.62804 * 111.48072 * 21 7 5 42 42 H 1.07995 * 122.53829 * 359.97438 * 23 22 2 43 43 H 1.07997 * 122.53726 * 179.72273 * 24 23 22 44 44 H 1.07996 * 125.19913 * 180.20630 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 16 1.6211 1.6071 -2.4678 7 7 2.6897 -0.6256 -3.4309 8 6 3.0491 -2.0514 -3.3905 9 6 2.4214 -2.7414 -4.6121 10 7 2.8304 -2.0327 -5.8321 11 6 2.3977 -2.7595 -7.0331 12 6 3.1264 -4.0762 -7.1132 13 1 3.8393 -4.3463 -6.3482 14 6 2.8822 -4.9365 -8.1626 15 7 2.0138 -4.6080 -9.0939 16 14 3.7849 -6.5690 -8.2615 17 1 3.4777 -7.3785 -7.0550 18 1 3.3476 -7.3037 -9.4757 19 1 5.2476 -6.3223 -8.3327 20 6 2.3260 -0.6531 -5.8414 21 6 2.9440 0.1211 -4.6723 22 6 2.0322 -0.7104 1.2305 23 6 2.4670 -0.1118 2.3404 24 6 2.8856 -0.9717 3.3412 25 6 2.7808 -2.2687 3.0480 26 16 2.1343 -2.4558 1.4230 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 2.2490 -1.6319 -1.1525 31 1 4.1334 -2.1567 -3.4236 32 1 2.6625 -2.5006 -2.4757 33 1 1.3350 -2.7211 -4.5264 34 1 2.7632 -3.7753 -4.6601 35 1 1.3243 -2.9410 -6.9811 36 1 2.6233 -2.1650 -7.9185 37 1 1.8422 -5.2130 -9.8324 38 1 1.2408 -0.6619 -5.7387 39 1 2.5990 -0.1723 -6.7807 40 1 2.4880 1.1089 -4.6053 41 1 4.0185 0.2205 -4.8262 42 1 2.4947 0.9624 2.4482 43 1 3.2646 -0.6191 4.2890 44 1 3.0554 -3.0799 3.7059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865268540.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:50 Heat of formation + Delta-G solvation = 51.690745 kcal Electronic energy + Delta-G solvation = -24677.207655 eV Core-core repulsion = 21268.045090 eV Total energy + Delta-G solvation = -3409.162565 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.113 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.25141 -39.53643 -38.31208 -36.55755 -34.66027 -32.88016 -32.28343 -30.15535 -29.41035 -27.62345 -25.66549 -25.46015 -24.29672 -23.32444 -22.98042 -21.35843 -20.29597 -19.53077 -18.69231 -18.38919 -17.67174 -16.76109 -16.45505 -16.36621 -16.12429 -16.08171 -15.77008 -15.43196 -15.34656 -15.13911 -14.48605 -14.18165 -13.86921 -13.64560 -13.62326 -13.28495 -13.15365 -12.95059 -12.89317 -12.76880 -12.70543 -12.53772 -12.42197 -12.37116 -12.28005 -12.04149 -11.79815 -11.68325 -11.32438 -10.62560 -10.10375 -9.69898 -9.47875 -9.21328 -8.94277 -8.63111 -8.21402 -6.32347 -0.05922 0.29039 0.54300 0.77361 0.98747 1.42737 1.44108 1.45526 1.53169 1.78738 2.13171 2.39486 3.06604 3.14162 3.41005 3.61776 3.84525 3.93429 4.07563 4.10375 4.20078 4.24754 4.25798 4.32599 4.52461 4.63211 4.66476 4.68810 4.73465 4.79999 4.82234 4.89757 4.99350 5.13190 5.16157 5.21098 5.23274 5.29034 5.37059 5.49820 5.61331 5.65269 5.98827 6.09983 6.19568 6.47836 6.82948 7.37939 8.89581 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.002818 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.093898 B = 9934.388565 C =11486.521911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.226 3.774 3 H 0.116 0.884 4 N -0.674 5.674 5 C 0.585 3.415 6 S -0.716 6.716 7 N -0.559 5.559 8 C 0.108 3.892 9 C 0.053 3.947 10 N -0.536 5.536 11 C 0.209 3.791 12 C -0.523 4.523 13 H 0.071 0.929 14 C 0.002 3.998 15 N -0.936 5.936 16 Si 0.969 3.031 17 H -0.264 1.264 18 H -0.289 1.289 19 H -0.267 1.267 20 C 0.045 3.955 21 C 0.122 3.878 22 C -0.209 4.209 23 C -0.117 4.117 24 C -0.140 4.140 25 C -0.201 4.201 26 S 0.082 5.918 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.403 0.597 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.016 0.984 34 H 0.095 0.905 35 H -0.040 1.040 36 H 0.007 0.993 37 H 0.264 0.736 38 H 0.017 0.983 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.156 0.844 43 H 0.166 0.834 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 4.363 26.470 26.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.120 3.880 3 H 0.134 0.866 4 N -0.307 5.307 5 C 0.222 3.778 6 S -0.588 6.588 7 N -0.266 5.266 8 C -0.017 4.017 9 C -0.076 4.076 10 N -0.261 5.261 11 C 0.083 3.917 12 C -0.561 4.561 13 H 0.090 0.910 14 C -0.196 4.196 15 N -0.576 5.576 16 Si 0.794 3.206 17 H -0.189 1.189 18 H -0.214 1.214 19 H -0.192 1.192 20 C -0.085 4.085 21 C -0.001 4.001 22 C -0.327 4.327 23 C -0.148 4.148 24 C -0.170 4.170 25 C -0.337 4.337 26 S 0.345 5.655 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.244 0.756 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.034 0.966 34 H 0.113 0.887 35 H -0.023 1.023 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.108 0.892 40 H 0.139 0.861 41 H 0.115 0.885 42 H 0.174 0.826 43 H 0.184 0.816 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.013 4.077 25.349 25.753 hybrid contribution -0.230 -0.947 0.141 0.984 sum 1.783 3.130 25.490 25.743 Atomic orbital electron populations 1.22155 0.92624 1.02550 1.03994 1.19635 0.95125 0.96286 0.76939 0.86600 1.45303 1.64527 1.13327 1.07523 1.21828 0.80843 0.92987 0.82152 1.93405 1.71225 1.01447 1.92742 1.47500 1.55901 1.11305 1.11914 1.22380 1.02736 0.78021 0.98567 1.22387 0.96495 0.99470 0.89237 1.62060 1.59540 1.01616 1.02872 1.19370 0.91977 0.93177 0.87179 1.21419 1.23670 1.02021 1.09023 0.91042 1.25925 0.96056 1.02505 0.95161 1.70081 1.35803 1.38659 1.13049 0.85438 0.78963 0.78619 0.77621 1.18875 1.21428 1.19220 1.22445 0.96380 0.90353 0.99287 1.22311 1.02471 0.96596 0.78749 1.24509 1.10972 0.96909 1.00283 1.20417 0.99451 1.02573 0.92373 1.20474 1.02856 0.91992 1.01682 1.26002 1.07313 1.01624 0.98726 1.84370 1.63571 1.03504 1.14029 0.89345 0.91877 0.92317 0.75566 0.87448 0.87975 0.96570 0.88665 1.02271 0.97447 0.92722 0.96494 0.89207 0.86116 0.88469 0.82645 0.81636 0.79512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.39 71.98 0.68 -2.23 16 2 C 0.23 4.27 2.75 44.24 0.12 4.40 16 3 H 0.12 2.55 6.94 -2.39 -0.02 2.54 16 4 N -0.67 -13.99 4.97 -333.18 -1.66 -15.65 16 5 C 0.58 15.68 7.68 179.06 1.38 17.06 16 6 S -0.72 -23.94 25.62 -56.49 -1.45 -25.38 16 7 N -0.56 -14.85 3.00 -705.02 -2.12 -16.97 16 8 C 0.11 2.56 6.57 86.50 0.57 3.12 16 9 C 0.05 1.78 5.47 86.54 0.47 2.25 16 10 N -0.54 -21.11 4.62 -898.87 -4.15 -25.27 16 11 C 0.21 10.58 4.72 85.56 0.40 10.98 16 12 C -0.52 -27.73 8.41 25.60 0.22 -27.51 16 13 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 14 C 0.00 0.10 5.46 84.65 0.46 0.56 16 15 N -0.94 -54.93 13.29 21.45 0.28 -54.64 16 16 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 17 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 18 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 20 C 0.04 1.53 5.62 86.39 0.49 2.02 16 21 C 0.12 3.49 6.51 86.35 0.56 4.05 16 22 C -0.21 -3.25 5.45 24.59 0.13 -3.12 16 23 C -0.12 -1.54 10.04 21.22 0.21 -1.33 16 24 C -0.14 -1.50 10.18 21.22 0.22 -1.29 16 25 C -0.20 -2.19 11.23 66.72 0.75 -1.44 16 26 S 0.08 1.13 22.31 -56.49 -1.26 -0.13 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.52 7.18 -2.39 -0.02 1.51 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.40 7.08 5.21 -92.70 -0.48 6.59 16 31 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.10 1.80 5.73 -2.38 -0.01 1.79 16 33 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.10 3.33 6.67 -2.39 -0.02 3.32 16 35 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 36 H 0.01 0.41 7.97 -2.38 -0.02 0.39 16 37 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 38 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.09 3.06 7.99 -2.39 -0.02 3.04 16 40 H 0.12 3.66 5.99 -3.21 -0.02 3.64 16 41 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 42 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 43 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 44 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -67.53 374.41 -1.15 -68.68 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.52 Total: 17.72 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.66 Total: 7.52 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -7.64 Total: -112.52 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: -22.80 SS G_CDS: -2.71 Total: -25.51 kcal Total: -67.53 -1.15 -68.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865268540.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.368 kcal (2) G-P(sol) polarization free energy of solvation -67.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds