Wall clock time and date at job start Sat Apr 11 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86801 * 119.99753 * 2 1 4 4 H 1.48500 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47503 * 60.00025 * 3 2 1 6 6 H 1.48504 * 109.46988 * 299.99854 * 3 2 1 7 7 C 1.39943 * 120.00590 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00715 * 154.92347 * 7 2 1 9 9 C 1.41399 * 119.99749 * 334.92275 * 7 2 1 10 10 C 1.40743 * 120.24011 * 329.31817 * 9 7 2 11 11 C 1.37595 * 119.73809 * 179.69522 * 10 9 7 12 12 C 1.38650 * 120.25302 * 0.60496 * 11 10 9 13 13 C 1.38619 * 120.50214 * 359.67337 * 12 11 10 14 14 C 1.37633 * 120.24358 * 0.02562 * 13 12 11 15 15 S 1.76208 * 120.12508 * 180.02562 * 14 13 12 16 16 O 1.42097 * 106.39934 * 227.73551 * 15 14 13 17 17 O 1.42090 * 106.40073 * 0.65651 * 15 14 13 18 18 N 1.65597 * 107.21778 * 114.19920 * 15 14 13 19 19 C 1.44584 * 118.64097 * 273.99702 * 18 15 14 20 20 C 1.54863 * 109.59562 * 270.70225 * 19 18 15 21 21 C 1.47091 * 110.32479 * 288.72928 * 20 19 18 22 22 C 1.52564 * 114.32315 * 62.80942 * 21 20 19 23 23 H 1.08998 * 109.49474 * 34.94717 * 22 21 20 24 24 C 1.52999 * 109.49289 * 154.99629 * 22 21 20 25 25 O 1.42899 * 109.47053 * 294.99825 * 24 22 21 26 26 C 1.50887 * 109.35748 * 274.98475 * 22 21 20 27 27 C 1.47607 * 118.64510 * 93.72413 * 18 15 14 28 28 H 0.97010 * 119.99940 * 174.23798 * 1 2 3 29 29 H 1.08000 * 120.12773 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.87533 * 180.32207 * 11 10 9 31 31 H 1.08005 * 119.75726 * 179.69341 * 12 11 10 32 32 H 1.08000 * 119.87624 * 180.02562 * 13 12 11 33 33 H 1.08993 * 109.45037 * 30.74549 * 19 18 15 34 34 H 1.08998 * 109.44850 * 150.66461 * 19 18 15 35 35 H 1.08998 * 109.33079 * 48.99935 * 20 19 18 36 36 H 1.09012 * 109.32291 * 168.47336 * 20 19 18 37 37 H 1.08995 * 108.51308 * 184.05604 * 21 20 19 38 38 H 1.08995 * 108.51609 * 301.70741 * 21 20 19 39 39 H 1.08995 * 109.47106 * 55.00137 * 24 22 21 40 40 H 1.08999 * 109.47091 * 174.99776 * 24 22 21 41 41 H 0.96697 * 113.99497 * 180.02562 * 25 24 22 42 42 H 1.08999 * 109.36747 * 212.07584 * 26 22 21 43 43 H 1.08998 * 109.36710 * 331.69564 * 26 22 21 44 44 H 1.08996 * 108.95065 * 258.57706 * 27 18 15 45 45 H 1.08994 * 108.94691 * 17.20861 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3465 -0.0006 5 1 1.8834 2.3965 1.2124 6 1 1.8833 2.3964 -1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0116 -1.2558 -0.3969 9 6 1.4010 -2.3790 0.5180 10 6 0.4615 -2.2854 1.5617 11 6 -0.1275 -3.4273 2.0542 12 6 0.2107 -4.6675 1.5348 13 6 1.1390 -4.7720 0.5107 14 6 1.7362 -3.6428 -0.0016 15 16 2.9153 -3.7792 -1.3039 16 8 4.0286 -2.9829 -0.9221 17 8 3.0178 -5.1632 -1.6089 18 7 2.2573 -3.0535 -2.6390 19 6 1.3971 -3.8348 -3.4992 20 6 2.2480 -4.5340 -4.5880 21 6 2.7407 -3.5485 -5.5625 22 6 3.6734 -2.4946 -4.9735 23 1 4.2816 -2.9447 -4.1888 24 6 4.5841 -1.9465 -6.0740 25 8 5.4411 -2.9881 -6.5458 26 6 2.8531 -1.3698 -4.3916 27 6 2.5682 -1.6341 -2.8983 28 1 -0.4850 -0.8359 -0.0843 29 1 0.2000 -1.3207 1.9708 30 1 -0.8525 -3.3576 2.8516 31 1 -0.2530 -5.5590 1.9307 32 1 1.3946 -5.7432 0.1133 33 1 0.8772 -4.5871 -2.9062 34 1 0.6670 -3.1795 -3.9743 35 1 3.0960 -5.0323 -4.1184 36 1 1.6367 -5.2756 -5.1025 37 1 3.2728 -4.0789 -6.3522 38 1 1.8837 -3.0408 -6.0048 39 1 3.9751 -1.5756 -6.8984 40 1 5.1882 -1.1323 -5.6737 41 1 6.0477 -2.7113 -7.2462 42 1 3.4000 -0.4326 -4.4949 43 1 1.9080 -1.2958 -4.9297 44 1 1.7228 -1.0230 -2.5822 45 1 3.4447 -1.3515 -2.3152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867312297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:36:58 Heat of formation + Delta-G solvation = -143.070881 kcal Electronic energy + Delta-G solvation = -29617.424135 eV Core-core repulsion = 25724.770451 eV Total energy + Delta-G solvation = -3892.653685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11847 -39.61619 -38.24161 -37.54018 -36.72731 -35.88587 -34.57431 -33.58910 -31.97613 -31.31102 -28.49180 -27.19845 -26.66756 -24.21888 -23.59285 -23.04427 -22.16928 -20.96860 -20.18459 -19.43840 -18.61012 -18.21842 -17.91678 -17.22359 -16.65546 -16.29820 -16.07211 -15.94329 -15.66985 -15.52995 -15.08522 -15.06602 -14.59365 -14.43574 -14.11183 -14.02501 -13.64064 -13.55790 -13.33465 -13.09469 -13.03922 -13.02227 -12.81891 -12.78218 -12.71379 -12.28205 -12.13434 -11.99123 -11.70962 -11.57133 -11.49873 -11.40252 -11.25200 -11.09624 -10.91614 -10.75629 -10.04790 -9.75096 -9.64059 -9.29725 -6.70144 -0.23050 0.41066 0.84970 1.50625 1.60173 1.81732 2.21170 2.26038 2.55599 2.94451 3.30993 3.36937 3.60057 3.73871 3.91437 3.99261 4.12731 4.18221 4.24939 4.31045 4.35532 4.52191 4.53980 4.59814 4.64059 4.66452 4.77280 4.79012 4.88207 4.97088 5.09564 5.12445 5.16887 5.22410 5.32079 5.34845 5.42234 5.46143 5.48628 5.53283 5.58218 5.75609 5.83869 5.98045 6.00522 6.17673 6.58083 6.76301 6.98952 7.91811 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.005821 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.987153 B = 4809.275460 C = 6345.316983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.025 3.975 3 Si 1.092 2.908 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.248 1.248 7 C -0.543 4.543 8 H 0.106 0.894 9 C 0.148 3.852 10 C -0.231 4.231 11 C -0.056 4.056 12 C -0.261 4.261 13 C -0.005 4.005 14 C -0.801 4.801 15 S 2.710 3.290 16 O -1.004 7.004 17 O -1.006 7.006 18 N -0.977 5.977 19 C 0.123 3.877 20 C -0.137 4.137 21 C -0.103 4.103 22 C -0.091 4.091 23 H 0.040 0.960 24 C 0.083 3.917 25 O -0.595 6.595 26 C -0.115 4.115 27 C 0.119 3.881 28 H 0.289 0.711 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.395 0.605 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 1.314 -12.414 12.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.196 4.196 3 Si 0.909 3.091 4 H -0.191 1.191 5 H -0.192 1.192 6 H -0.172 1.172 7 C -0.570 4.570 8 H 0.123 0.877 9 C 0.143 3.857 10 C -0.251 4.251 11 C -0.074 4.074 12 C -0.280 4.280 13 C -0.025 4.025 14 C -0.894 4.894 15 S 2.808 3.192 16 O -0.994 6.994 17 O -0.997 6.997 18 N -0.815 5.815 19 C -0.002 4.002 20 C -0.176 4.176 21 C -0.140 4.140 22 C -0.109 4.109 23 H 0.059 0.941 24 C 0.006 3.994 25 O -0.403 6.403 26 C -0.154 4.154 27 C -0.005 4.005 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.059 0.941 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.245 0.755 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.811 2.225 -11.934 12.274 hybrid contribution -0.288 -1.512 0.641 1.667 sum 1.523 0.713 -11.293 11.418 Atomic orbital electron populations 1.70507 1.08680 1.33719 1.27843 1.28127 0.95396 1.06515 0.89573 0.83346 0.75417 0.70560 0.79792 1.19058 1.19170 1.17204 1.21519 1.04129 0.94513 1.36835 0.87674 1.17328 0.88692 0.91012 0.88643 1.21379 1.04998 0.97682 1.01020 1.21204 0.96317 0.92726 0.97170 1.20879 1.05702 0.97480 1.03984 1.20642 0.92126 0.96001 0.93711 1.30228 1.31675 1.00372 1.27152 1.00706 0.73797 0.71492 0.73221 1.93404 1.51800 1.70710 1.83521 1.93408 1.87309 1.33970 1.84969 1.56738 1.64476 1.20627 1.39623 1.21352 0.92463 0.94198 0.92220 1.21305 1.00108 0.98823 0.97342 1.20381 0.99015 0.96591 0.97993 1.20678 0.96463 0.96799 0.97002 0.94115 1.22304 0.91867 0.88984 0.96240 1.86467 1.54655 1.39474 1.59747 1.21819 1.01312 0.98679 0.93576 1.21968 1.01350 0.79452 0.97721 0.89829 0.88284 0.85522 0.85243 0.86171 0.91748 0.88327 0.94051 0.88891 0.91692 0.90306 0.91227 0.92809 0.75527 0.88660 0.89312 0.91616 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.35 12.51 21.82 0.27 -37.08 16 2 C 0.02 1.14 4.67 85.26 0.40 1.54 16 3 Si 1.09 39.35 30.00 68.60 2.06 41.41 16 4 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.25 -7.97 7.11 99.48 0.71 -7.26 16 7 C -0.54 -26.78 6.09 23.46 0.14 -26.64 16 8 H 0.11 5.34 4.16 -2.91 -0.01 5.33 16 9 C 0.15 7.52 5.17 -21.29 -0.11 7.41 16 10 C -0.23 -11.24 8.03 22.73 0.18 -11.06 16 11 C -0.06 -2.39 10.02 22.22 0.22 -2.17 16 12 C -0.26 -10.93 10.05 22.46 0.23 -10.71 16 13 C -0.01 -0.23 9.54 22.22 0.21 -0.02 16 14 C -0.80 -39.02 5.97 22.73 0.14 -38.88 16 15 S 2.71 124.07 5.01 -56.49 -0.28 123.78 16 16 O -1.00 -51.15 14.13 -128.00 -1.81 -52.96 16 17 O -1.01 -47.34 15.20 -128.00 -1.95 -49.29 16 18 N -0.98 -36.51 2.52 -511.74 -1.29 -37.80 16 19 C 0.12 3.85 5.25 87.37 0.46 4.31 16 20 C -0.14 -3.85 5.68 29.39 0.17 -3.69 16 21 C -0.10 -2.48 4.62 28.61 0.13 -2.35 16 22 C -0.09 -2.37 2.04 -11.63 -0.02 -2.39 16 23 H 0.04 1.38 7.49 -2.39 -0.02 1.36 16 24 C 0.08 1.67 6.23 71.98 0.45 2.11 16 25 O -0.60 -12.89 12.91 -148.98 -1.92 -14.81 16 26 C -0.11 -2.85 5.24 30.35 0.16 -2.69 16 27 C 0.12 4.13 4.62 86.61 0.40 4.53 16 28 H 0.29 14.34 6.91 -92.70 -0.64 13.70 16 29 H 0.10 4.89 6.89 -2.91 -0.02 4.87 16 30 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 32 H 0.12 5.06 7.32 -2.91 -0.02 5.03 16 33 H 0.06 2.10 7.78 -2.39 -0.02 2.08 16 34 H 0.10 2.57 8.06 -2.39 -0.02 2.56 16 35 H 0.04 1.42 7.32 -2.39 -0.02 1.40 16 36 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.06 1.56 7.23 -2.39 -0.02 1.55 16 38 H 0.08 1.54 7.35 -2.39 -0.02 1.52 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 0.98 7.98 -2.39 -0.02 0.96 16 41 H 0.40 4.44 9.12 -74.06 -0.68 3.76 16 42 H 0.09 1.95 7.66 -2.39 -0.02 1.93 16 43 H 0.09 1.84 7.31 -2.39 -0.02 1.82 16 44 H 0.07 2.39 7.19 -2.39 -0.02 2.37 16 45 H 0.07 2.84 5.60 -2.39 -0.01 2.83 16 Total: -1.00 -65.65 354.58 -1.29 -66.95 By element: Atomic # 1 Polarization: 40.01 SS G_CDS: 0.47 Total: 40.48 kcal Atomic # 6 Polarization: -83.84 SS G_CDS: 3.15 Total: -80.69 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -1.02 Total: -74.87 kcal Atomic # 8 Polarization: -111.38 SS G_CDS: -5.68 Total: -117.05 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.06 Total: 41.41 kcal Atomic # 16 Polarization: 124.07 SS G_CDS: -0.28 Total: 123.78 kcal Total: -65.65 -1.29 -66.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867312297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.125 kcal (2) G-P(sol) polarization free energy of solvation -65.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds